marcius's structure [86 articles] Export

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	RNA structure: experimental analysis. [My Copy] Curr Opin Microbiol (24 May 2007) by Brice Felden posted to experimental review rna structure by marcius on 2007-06-12 12:56:46 as along with 4 people and 2 groups svozil penka emidio_capriotti debatebob BioinfoCIPF SGU-CIPF
	Structural proteomics: from the molecule to the system [My Copy] Nature Structural & Molecular Biology, Vol. 14, No. 1., pp. 3-4. by Lucia Banci, Wolfgang Baumeister, Josefina Enfedaque, et al.Udo Heinemann, Gunter Schneider, Israel Silman, Joel L. Sussman posted to meeting proteomics review structural_genomics structure views by marcius on 2007-01-09 09:39:59 as along with 1 person and 2 groups gerry BioinfoCIPF SGU-CIPF
	SCOR: a Structural Classification of RNA database. [My Copy] Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 392-394. by P. S. Klosterman, M. Tamura, S. R. Holbrook, S. E. Brenner posted to databases rna structure by marcius on 2006-12-21 14:21:00 as along with 2 people and 2 groups dgront debatebob BioinfoCIPF SGU-CIPF
	RNA structure: the long and the short of it. [My Copy] Curr Opin Struct Biol, Vol. 15, No. 3. (June 2005), pp. 302-308. by S. R. Holbrook posted to review rna structure by marcius on 2006-11-29 12:55:28 as along with 3 people and 2 groups jec105 eckart_bindewald debatebob BioinfoCIPF SGU-CIPF
	RNA structures and folding: from conventional to new issues in structure predictions. [My Copy] Curr Opin Struct Biol, Vol. 7, No. 2. (April 1997), pp. 229-235. by P. Schuster, P. F. Stadler, A. Renner posted to prediction review rna structure by marcius on 2006-10-23 17:16:19 as along with 1 person and 2 groups emidio_capriotti BioinfoCIPF SGU-CIPF
	Structural basis for messenger RNA movement on the ribosome. [My Copy] Nature, Vol. 444, No. 7117. (16 November 2006), pp. 391-394. by G. Yusupova, L. Jenner, B. Rees, D. Moras, M. Yusupov posted to ribosome rna structure by marcius on 2006-10-20 14:25:18 as along with 3 people and 2 groups kirasato ivankel braingrind BioinfoCIPF SGU-CIPF
	Sampling Realistic Protein Conformations Using Local Structural Bias [My Copy] PLoS Computational Biology, Vol. 2, No. 9. (1 September 2006), e131. by Thomas Hamelryck, John T. Kent, Anders Krogh posted to biophysics clustering computational_biology dynamics structure by marcius on 2006-09-29 08:57:03 as along with 1 person and 2 groups mijam BioinfoCIPF SGU-CIPF
	A novel DNA-binding motif in MarA: the first structure for an AraC family transcriptional activator. [My Copy] Proc Natl Acad Sci U S A, Vol. 95, No. 18. (1 September 1998), pp. 10413-10418. by S. Rhee, R. G. Martin, J. L. Rosner, D. R. Davies posted to protein structure by marcius on 2006-09-27 15:15:44 as along with 2 people and 2 groups jstajic ezralanglois BioinfoCIPF SGU-CIPF
	Natural history as a predictor of protein evolvability [My Copy] Protein Engineering, Design and Selection, Vol. 19, No. 10. (1 October 2006), pp. 439-442. by Taryn L. O'Loughlin, Wayne M. Patrick, Ichiro Matsumura posted to biology evolution protein structure by marcius on 2006-09-27 13:52:56 as along with 1 person and 2 groups pablocarb BioinfoCIPF SGU-CIPF
	Application of the RNA structure classification system, CSNA, to NMR structure determination. [My Copy] Nucleic Acids Res Suppl, No. 3. (2003), pp. 127-128. by S. Baba, A. Takasu, K. Watanabe, G. Kawai posted to classification ontology rna structure by marcius on 2006-09-13 15:19:00 as along with 1 person and 2 groups eckart_bindewald BioinfoCIPF SGU-CIPF
	Computational methods for RNA structure determination. [My Copy] Curr Opin Struct Biol, Vol. 11, No. 3. (June 2001), pp. 282-286. by F. Major, R. Griffey posted to algorithms bioinformatics review rna structure by marcius on 2006-09-13 15:18:38 as along with 3 people and 2 groups lillekatt P2324548 eckart_bindewald BioinfoCIPF SGU-CIPF
	Mass spectrometry and the search for moonlighting proteins. [My Copy] Mass Spectrom Rev, Vol. 24, No. 6. (c 2005), pp. 772-782. by C. J. Jeffery posted to function protein structure by marcius on 2006-09-08 16:34:58 as along with 1 person and 2 groups tny BioinfoCIPF SGU-CIPF
	Protein families and their evolution-a structural perspective. [My Copy] Annu Rev Biochem, Vol. 74 (2005), pp. 867-900. by C. A. Orengo, J. M. Thornton posted to evolution protein review structure by marcius on 2006-09-08 12:28:15 as along with 20 people and 6 groups krapnik dfdong ucbcjbm flbarroso kumar_physics yuslinaz ssgong ana barry tjimenez jwm chad_davis Einat Schmidtc sriram_s ezotenko redelings medic0747 nigham sim82 structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
	Gene3D: modelling protein structure, function and evolution. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by C. Yeats, M. Maibaum, R. Marsden, et al.M. Dibley, D. Lee, S. Addou, C. A. Orengo posted to function protein server structure by marcius on 2006-09-08 12:27:34 as along with 1 person and 2 groups siebertm BioinfoCIPF SGU-CIPF
	Exploiting protein structure data to explore the evolution of protein function and biological complexity. [My Copy] Philos Trans R Soc Lond B Biol Sci, Vol. 361, No. 1467. (29 March 2006), pp. 425-440. by R. L. Marsden, J. A. Ranea, A. Sillero, et al.O. Redfern, C. Yeats, M. Maibaum, D. Lee, S. Addou, G. A. Reeves, T. J. Dallman, C. A. Orengo posted to evolution function protein structure by marcius on 2006-09-08 12:26:40 as along with 2 people and 2 groups yuslinaz jsnoddy BioinfoCIPF SGU-CIPF
	Structural diversity of domain superfamilies in the CATH database. [My Copy] Journal of molecular biology, Vol. 360, No. 3. (14 July 2006), pp. 725-741. by Gabrielle A. Reeves, Timothy J. Dallman, Oliver C. Redfern, Adrian Akpor, Christine A. Orengo posted to classification databases structure by marcius on 2006-09-08 12:25:48 as along with 4 people and 5 groups martainn yuslinaz barry sobolevnrm structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF baker-group
	Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (04 September 2006), 400. by Robin Dowell, Sean Eddy posted to algorithms alignment bioinformatics prediction rna structure by marcius on 2006-09-07 22:04:11 as along with 6 people and 2 groups nuin rb_india eckart_bindewald dquest ilh reyez BioinfoCIPF SGU-CIPF
	SCOR: Structural Classification of RNA, version 2.0. [My Copy] Nucleic acids research, Vol. 32, No. Database issue. (1 January 2004) by M. Tamura, D. K. Hendrix, P. S. Klosterman, N. R. Schimmelman, S. E. Brenner, S. R. Holbrook posted to databases rna structure by marcius on 2006-09-07 17:42:13 as along with 4 people and 3 groups rb_india condon debatebob reyez beta BioinfoCIPF SGU-CIPF
	MeRNA: a database of metal ion binding sites in RNA structures. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by L. R. Stefan, R. Zhang, A. G. Levitan, D. K. Hendrix, S. E. Brenner, S. R. Holbrook posted to databases rna structure by marcius on 2006-09-07 17:41:37 as along with 2 groups BioinfoCIPF SGU-CIPF
	RNA structural motifs: building blocks of a modular biomolecule. [My Copy] Q Rev Biophys, Vol. 38, No. 3. (August 2005), pp. 221-243. by D. K. Hendrix, S. E. Brenner, S. R. Holbrook posted to motif rna structure by marcius on 2006-09-07 17:40:41 as along with 5 people and 2 groups NicholasErho nikkiwithers svozil eckart_bindewald debatebob BioinfoCIPF SGU-CIPF
	The RNA Ontology Consortium: an open invitation to the RNA community. [My Copy] RNA, Vol. 12, No. 4. (April 2006), pp. 533-541. by N. B. Leontis, R. B. Altman, H. M. Berman, et al.S. E. Brenner, J. W. Brown, D. R. Engelke, S. C. Harvey, S. R. Holbrook, F. Jossinet, S. E. Lewis, F. Major, D. H. Mathews, J. S. Richardson, J. R. Williamson, E. Westhof posted to bioinformatics classification clustering rna sequence structure by marcius on 2006-09-07 17:37:08 as along with 4 people and 2 groups toerst dullhunk debatebob reyez BioinfoCIPF SGU-CIPF
	Structure and dynamics of ribosomal RNA. [My Copy] Curr Opin Struct Biol, Vol. 8, No. 3. (June 1998), pp. 294-300. by S. A. Woodson, N. B. Leontis posted to review rna structure by marcius on 2006-09-06 10:33:29 as along with 2 groups BioinfoCIPF SGU-CIPF
	Conserved geometrical base-pairing patterns in RNA. [My Copy] Q Rev Biophys, Vol. 31, No. 4. (November 1998), pp. 399-455. by N. B. Leontis, E. Westhof posted to review rna structure by marcius on 2006-09-06 10:33:20 as along with 2 groups BioinfoCIPF SGU-CIPF
	SCOPPI: a structural classification of protein-protein interfaces. [My Copy] Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006) by Christof Winter, Andreas Henschel, Wan Kyu K. Kim, Michael Schroeder posted to protein_interactions servers structure by marcius on 2006-08-31 20:21:58 as along with 11 people and 4 groups dfdong winterschlaefer higueruelo sjcockell ana kuhn bicko chad_davis choonpeng Evangelia kintoki structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Structural biology: Antiviral drugs fit for a purpose [My Copy] Nature (16 August 2006) by Ming Luo posted to drug review structure views virus by marcius on 2006-08-23 13:20:14 as along with 2 groups BioinfoCIPF SGU-CIPF
	RNA Structure: Reading the Ribosome [My Copy] Science, Vol. 309, No. 5740. (02 September 2005), pp. 1508-1514. by Harry F. Noller posted to review ribosome rna structure by marcius on 2006-08-10 17:13:16 as along with 3 people and 2 groups zwang dayjm jarasch BioinfoCIPF SGU-CIPF
	Altered structural fluctuations in duplex RNA versus DNA: a conformational switch involving base pair opening. [My Copy] Nucleic Acids Res, Vol. 31, No. 24. (15 December 2003), pp. 7131-7140. by Y. Pan, A. D. MacKerell posted to biophysics dna molecular_dynamics rna structure by marcius on 2006-07-28 12:39:42 as along with 1 person and 2 groups Elena_Zubova BioinfoCIPF SGU-CIPF
	The correlation between protein stability and dipole moment: a critical test [My Copy] Protein Engineering, Design and Selection, Vol. 19, No. 8. (August 2006), pp. 355-358. by Wunderlich, Michael, Schmid, X. Franz posted to biophysics experimental protein stability structure by marcius on 2006-07-26 14:35:56 as along with 2 groups BioinfoCIPF SGU-CIPF
	Mass spectrometry of RNA [My Copy] Trends in Biochemical Sciences, Vol. 31, No. 3. (March 2006), pp. 173-181. by Benjamin Thomas, Alexandre V. Akoulitchev posted to biophysics rna structure by marcius on 2006-07-20 12:23:20 as along with 1 person and 3 groups cdawson BioinfoCIPF SGU-CIPF GIG
	RNA allostery glimpsed [My Copy] Nature Structural & Molecular Biology, Vol. 13, No. 7., pp. 569-571. by Wade C. Winkler, Charles E. Dann posted to function rna structure by marcius on 2006-07-18 12:28:51 as along with 2 groups BioinfoCIPF SGU-CIPF
	Native secondary structure formation in RNA may be a slave to tertiary folding [My Copy] PNAS, Vol. 95, No. 20. (29 September 1998), pp. 11506-11508. by D. Thirumalai posted to rna secondary_structure structure by marcius on 2006-07-13 10:29:29 as along with 1 person and 3 groups condon beta BioinfoCIPF SGU-CIPF
	An algorithm for detecting homologues of known structured RNAs in genomes. [My Copy] Proc IEEE Comput Syst Bioinform Conf (2004), pp. 300-310. by S. Y. Le, J. V. Maizel, K. Zhang posted to algorithms bioinformatics rna structure by marcius on 2006-07-13 10:23:58 as along with 2 people and 4 groups arcticrasta bsmagic Bioinformatics BioinfoCIPF bioinplant SGU-CIPF
	Molecular basis for temperature sensing by an RNA thermometer [My Copy] The EMBO Journal, Vol. aop, No. current. (25 May 2006) by Saheli Chowdhury, Christophe Maris, Frederic H. T. Allain, Franz Narberhaus posted to nmr rna structure by marcius on 2006-05-22 19:36:51 as along with 2 people and 3 groups bala 3times3 BioinfoCIPF SGU-CIPF DictyosteliumGroup
	Candidates for Novel RNA Topologies [My Copy] Journal of Molecular Biology, Vol. 341, No. 5. (27 August 2004), pp. 1129-1144. by Namhee Kim, Nahum Shiffeldrim, Hin H. Gan, Tamar Schlick posted to bioinformatics classification clustering rna structure by marcius on 2006-05-19 22:17:31 as along with 2 people and 3 groups eckart_bindewald condon beta BioinfoCIPF SGU-CIPF
	Tertiary Motifs in RNA Structure and Folding. [My Copy] Angew Chem Int Ed Engl, Vol. 38, No. 16. (August 1999), pp. 2326-2343. by R. T. Batey, R. P. Rambo, J. A. Doudna posted to folding rna structure by marcius on 2006-05-18 00:21:04 as along with 3 people and 3 groups condon jarasch physics beta BioinfoCIPF SGU-CIPF
	Structure-guided recombination creates an artificial family of cytochromes p450. [My Copy] PLoS Biol, Vol. 4, No. 5. (May 2006) by C. R. Otey, M. Landwehr, J. B. Endelman, K. Hiraga, J. D. Bloom, F. H. Arnold posted to bioengineering function protein_fragments structure by marcius on 2006-05-16 19:22:13 as along with 2 groups BioinfoCIPF SGU-CIPF
	Energetics and cooperativity of tertiary hydrogen bonds in RNA structure. [My Copy] Biochemistry, Vol. 38, No. 27. (6 July 1999), pp. 8691-8702. by S. K. Silverman, T. R. Cech posted to biophysics rna structure by marcius on 2006-05-15 22:55:04 as along with 1 person and 3 groups condon beta BioinfoCIPF SGU-CIPF
	RNA folding causes secondary structure rearrangement. [My Copy] Proc Natl Acad Sci U S A, Vol. 95, No. 20. (29 September 1998), pp. 11555-11560. by M. Wu, I. Tinoco posted to rna secondary_structure structure by marcius on 2006-05-12 17:51:40 as along with 5 people and 3 groups rb_india austin condon Hosna apop beta BioinfoCIPF SGU-CIPF
	Physical Origins of Protein Superfamilies. [My Copy] J Mol Biol (6 February 2006) by Konstantin B B. Zeldovich, Igor N N. Berezovsky, Eugene I I. Shakhnovich posted to biophysics computational_biology evolution protein structure by marcius on 2006-04-27 20:29:04 as along with 3 people and 3 groups Einat laurabailey happy_manatee structural_bioinformatics BioinfoCIPF SGU-CIPF
	Stitching together RNA tertiary architectures [My Copy] Journal of Molecular Biology, Vol. 294, No. 4. (10 December 1999), pp. 829-849. by Thomas Hermann, Dinshaw J. Patel posted to biophysics folding rna structure by marcius on 2006-04-24 07:42:53 as along with 3 people and 3 groups ttjoseph condon jarasch beta BioinfoCIPF SGU-CIPF
	Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 26. (23 December 2003), pp. 15310-15315. by A. Xayaphoummine, T. Bucher, F. Thalmann, H. Isambert posted to bioinformatics rna secondary_structure structure by marcius on 2006-04-21 22:12:59 as along with 6 people and 3 groups evaf austin arcticrasta condon Hosna Kiarostami beta BioinfoCIPF SGU-CIPF
	Complete probabilistic analysis of RNA shapes. [My Copy] BMC Biol, Vol. 4, No. 1. (15 February 2006) by Bjorn Voss, Robert Giegerich, Marc Rehmsmeier posted to bioinformatics rna statistics structure by marcius on 2006-04-19 20:06:56 as along with 3 people and 4 groups rb_india andersbj condon microRNA beta BioinfoCIPF SGU-CIPF
	Pseudoknots: RNA structures with diverse functions. [My Copy] PLoS Biol, Vol. 3, No. 6. (June 2005) by D. W. Staple, S. E. Butcher posted to review rna structure by marcius on 2006-04-19 20:06:22 as along with 5 people and 3 groups rb_india austin arcticrasta condon Hosna beta BioinfoCIPF SGU-CIPF
	Asymmetry in RNA pseudoknots: observation and theory [My Copy] Nucl. Acids Res., Vol. 33, No. 7. (14 April 2005), pp. 2210-2214. by Daniel P. Aalberts, Nathan O. Hodas posted to rna structure by marcius on 2006-04-17 04:36:20 as along with 2 people and 3 groups ellarond condon beta BioinfoCIPF SGU-CIPF
	In vivo assembly of functional U7 snRNP requires RNA backbone flexibility within the Sm-binding site [My Copy] Nature Structural & Molecular Biology, Vol. 13, No. 4. (19 March 2006), pp. 347-353. by Nikolay G. Kolev, Joan A. Steitz posted to rna structure by marcius on 2006-04-05 07:46:31 as along with 2 groups BioinfoCIPF SGU-CIPF
	Structural biologyDesigner labels [My Copy] Nature, Vol. 440, No. 7080. (01 March 2006), pp. 40-40. by Stanley J. Opella posted to biology news structure by marcius on 2006-03-01 22:51:31 as along with 2 groups BioinfoCIPF SGU-CIPF
	Compact and ordered collapse of randomly generated RNA sequences [My Copy] Nature Structural & Molecular Biology, Vol. 12, No. 12. (06 November 2005), pp. 1130-1136. by Erik A. Schultes, Alexander Spasic, Udayan Mohanty, David P. Bartel posted to biophysics rna structure by marcius on 2006-02-27 23:15:47 as along with 1 person and 3 groups condon beta BioinfoCIPF SGU-CIPF
	Multiple Alignment of protein structures and sequences for VMD [My Copy] Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 504-506. by John Eargle, Dan Wright, Zaida Luthey-Schulten posted to bioinformatics software structure structure_alignment by marcius on 2006-02-16 18:13:52 as along with 2 people and 2 groups jeargle dimka BioinfoCIPF SGU-CIPF
	Correlation between evolutionary structural development and protein folding. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 52. (27 December 2005), pp. 18950-18955. by C. Nagao, T. P. Terada, T. Yomo, M. Sasai posted to biophysics comparative_modeling evolution protein_folding structure by marcius on 2006-02-09 01:09:32 as along with 2 people and 2 groups apaydin shuns BioinfoCIPF SGU-CIPF
	The structure of the 80S ribosome from Trypanosoma cruzi reveals unique rRNA components. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 29. (19 July 2005), pp. 10206-10211. by H. Gao, M. J. Ayub, M. J. Levin, J. Frank posted to ribosome rna structure by marcius on 2006-02-07 18:18:38 as along with 2 groups BioinfoCIPF SGU-CIPF

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rna	213
bioinformatics	196
review	127
biophysics	90
protein_structure	86
structure	86
evolution	86
structure_prediction	64
algorithms	56
computational_biology	53
secondary_structure	53
protein	43
folding	41
classification	38
ncrna	35
casp	35
drug	32
docking	32
protein_interactions	31
genome	30
function	29
microrna	27
cafasp	26
sequence_alignment	25
protein_function	24
software	23
views	22
servers	22
comparative_modeling	19
model_assessment	19
statistical_potentials	19
biology	18
structural_genomics	18
databases	17
ribosome	16
nmr	16
disease	16
protein_domains	15
ligand	15
protein_folding	15
bioengineering	14
clustering	14
protein_fragments	14
ab-initio	12
structure_alignment	11
genes	11
prediction	11
dna	10
statistics	9
snp	9
alignment	9
model_evaluation	8
membrane_protein	7
experimental	7
gene_expression	6
systems_biology	6
microarray	6
phylogeny	6
virus	5
mechano_receptors	5
foce_field	5
sequence	5
protein_threading	5
motif	5
molecular_dynamics	5
text_mining	4
ribozyme	4
discovery	4
rotamers	4
sequence-structure	4
protein_complexes	3
cancer	3
comparative_docking	3
server	3
news	3
human	3
interaction	3
meeting	3
immunology	2
programming	2
hypotesis	2
allosteric	2
proteomics	2
editorial	2
pleiotropy	2
pdb	2
hts	2
trypsin	1
ontology	1
loop_modeling	1
proteases	1
metabolomics	1
opensourcebiology	1
nucleosome	1
side_chains	1
protein_disorder	1
protein_design	1
nanotechnology	1
membrane	1
stability	1
disulfide	1
position	1
web20	1
malaria	1
congress	1
synthetic_biology	1
fold	1
glyco	1
dynamics	1
machine_learning	1
mysql	1
aminoacid_alphabets	1
metagenomics	1
php	1
molecular_mimicry	1
stem_cells	1
consensus	1
plant	1

marcius's structure [86 articles] Export

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