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	An Essay towards Solving a Problem in the Doctrine of Chances. By the Late Rev. Mr. Bayes, F. R. S. Communicated by Mr. Price, in a Letter to John Canton, A. M. F. R. S. [My Copy] Philosophical Transactions, Vol. 53 (1 January 1763), pp. 370-418. by Mr Bayes, Mr Price posted to tools prediction bioinformatics bayesian bayes by davidmam on 2009-12-01 00:39:14 as along with 1 person jriglesias
	The gputools package enables GPU computing in R. [My Copy] Bioinformatics (Oxford, England) (22 October 2009), btp608. by Joshua Buckner, Justin Wilson, Mark Seligman, Brian Athey, Stanley Watson, Fan Meng posted to r gpu bioinformatics by nuin on 2009-11-30 21:21:49 as along with 6 people operon hughitt1 BlackPhoenix shigepong neils druvus
	Predicting citation count of Bioinformatics papers within four years of publication. [My Copy] Bioinformatics (Oxford, England) (9 October 2009) by Alfonso Ibáñez, Pedro Larrañaga, Concha Bielza posted to bioinformatics by nuin on 2009-11-30 21:15:52 as along with 6 people Sergey_gerbek mgaldino lmichan papamicd operon dullhunk
	BIRI: a new approach for automatically discovering and indexing available public bioinformatics resources from the literature [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (7 October 2009), 320. by Guillermo de la Calle, Miguel G. Remesal, Stefano Chiesa, Diana de la Iglesia, Victor Maojo posted to bioinformatics by nuin on 2009-11-30 21:07:46 as along with 7 people and 3 groups perkeo sillitoe klauso dullhunk daforerog Effie lmichan Orengo Group Journal Picks Bioinformatics Core Service NaCTeM
	Maternal RNA content in oocytes of several mammalian and avian species. [My Copy] The Journal of experimental zoology, Vol. 265, No. 3. (1 March 1993), pp. 317-320. by B. Olszańska, A. Borgul posted to rna-content rna oocyte maternal-rna germline gametogenesis by sebastien_vigneau on 2009-11-30 20:36:54 as
	Structure and hydration of membranes embedded with voltage-sensing domains [My Copy] Nature, Vol. 462, No. 7272. (Nov 2009) by Dmitriy Krepkiy, Mihaela Mihailescu, J. Alfredo Freites, et al.Eric V. Schow, David L. Worcester, Klaus Gawrisch, Douglas J. Tobias, Stephen H. White, Kenton J. Swartz posted to electrostatics biomembrane by sobolevnrm on 2009-11-30 12:48:27 as
	Smooth potential energy surface for cavitation, dispersion, and repulsion free energies in polarizable continuum model [My Copy] Journal of Chemical Physics, Vol. 131, No. 20. (2009) by Y. Wang, H. Li posted to solvation nonpolar by sobolevnrm on 2009-11-30 12:48:27 as
	On the Validation of Molecular Dynamics Simulations of Saturated and cis-Monounsaturated Phosphatidylcholine Lipid Bilayers: A Comparison with Experiment [My Copy] Journal of Chemical Theory and Computation by David Poger, Alan E. Mark posted to molecular-simulation molecular-dynamics biomembranes by sobolevnrm on 2009-11-30 12:48:27 as
	Cell - Lipid Droplets Finally Get a Little R-E-S-P-E-C-T [My Copy] Cell, Vol. 139, No. 5. (2009), pp. 855-860. by R. V. Farese, T. C. Walther posted to review biomembrane by sobolevnrm on 2009-11-30 12:48:27 as
	Random network behaviour of protein structures [My Copy] Mol. BioSyst. (Jan 2010) by K. V. Brinda, Saraswathi Vishveshwara, Smitha Vishveshwara posted to structure graph-theory bioinformatics by sobolevnrm on 2009-11-30 12:48:27 as
	High-Order Narrow Stencil Finite-Difference Approximations of Second-Order Derivatives Involving Variable Coefficients [My Copy] SIAM Journal on Scientific Computing, Vol. 31, No. 6. (Jan 2009), pp. 4222-4243. by Ramji Kamakoti, Carlos Pantano posted to mathematics finite-differences by sobolevnrm on 2009-11-30 12:48:27 as
	Elastic Langmuir Layers and Membranes Subjected to Unidirectional Compression: Wrinkling and Collapse [My Copy] Langmuir by Krassimir D. Danov, Peter A. Kralchevsky, Simeon D. Stoyanov posted to mechanics biomembrane by sobolevnrm on 2009-11-30 12:48:27 as
	Iterative Pruning PCA Improves Resolution of Highly Structured Populations [My Copy] BMC Bioinformatics 2009 10:382, Vol. 10, No. 1. (Nov 2009) by Apichart Intarapanich, Philip Shaw, Anunchai Assawamakin, et al.Pongsakorn Wangkumhang, Chumpol Ngamphiw, Kridsadakorn Chaichoompu, Jittima Piriyapongsa, Sissades Tongsima posted to quasiharmonic-models clustering bioinformatics by sobolevnrm on 2009-11-30 12:48:27 as
	Mean Field Approximation in Conformation Dynamics [My Copy] Multiscale Modeling, Vol. 8, No. 1. (Jan 2009), pp. 254-268. by G. Friesecke, O. Junge, P. Koltai posted to mathematics enhanced-sampling by sobolevnrm on 2009-11-30 12:48:26 as
	Transcriptome Complexity in a Genome-Reduced Bacterium [My Copy] Science, Vol. 326, No. 5957. (27 November 2009), pp. 1268-1271. by Marc Guell, Vera van Noort, Eva Yus, et al.Wei-Hua Chen, Justine Leigh-Bell, Konstantinos Michalodimitrakis, Takuji Yamada, Manimozhiyan Arumugam, Tobias Doerks, Sebastian Kuhner, Michaela Rode, Mikita Suyama, Sabine Schmidt, Anne-Claude Gavin, Peer Bork, Luis Serrano posted to transcriptome pyrosequencing bacterium by epigenetics on 2009-11-30 12:47:28 as along with 2 people and 1 group balabu jalorenzo molnet-macs
	Catalysis and regulation [My Copy] Current Opinion in Structural Biology (22 November 2009) by Martin Noble, John S. Blanchard
	Agile methods in biomedical software development: a multi-site experience report [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (30 May 2006), 273. by David Kane, Moses Hohman, Ethan Cerami, Michael McCormick, Karl Kuhlmman, Jeff Byrd posted to programming bioinformatics agile by Vincent_Rouilly on 2009-11-30 10:42:59 as along with 5 people mmhohman nicklynch aalibes rdiaz mhucka
	Nucleosomes are well positioned in exons and carry characteristic histone modifications [My Copy] Genome Research, Vol. 19, No. 10. (18 October 2009), pp. 1732-1741. by Robin Andersson, Stefan Enroth, Alvaro Rada-Iglesias, Claes Wadelius, Jan Komorowski posted to nucleosomes histone_modification histone exon bioinformatics 2009 by suizifish on 2009-11-30 06:26:22 as along with 8 people xianjun owhitney lp2 megraw djkt fenghezi inesdesantiago cajunsushi
	The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome. [My Copy] PLoS genetics, Vol. 4, No. 7. (25 July 2008), e1000138. by Yutao Fu, Manisha Sinha, Craig L. Peterson, Zhiping Weng posted to nucleosomes histone_modification histone ctcf bioinformatics 2008 by suizifish on 2009-11-30 06:06:49 as along with 8 people and 3 groups gderwin sebastien_vigneau madreach polivares cisevol djkt clearbluespring inesdesantiago CTCF JLab BergmanLab
	An algorithm for selection of functional siRNA sequences. [My Copy] Biochemical and biophysical research communications, Vol. 316, No. 4. (16 April 2004), pp. 1050-1058. by Mohammed Amarzguioui, Hans Prydz posted to target sirna prediction bioinformatics by mtagaya on 2009-11-30 05:43:51 as
	Over-optimism in bioinformatics research. [My Copy] Bioinformatics (Oxford, England) (26 November 2009), btp648. by Anne-Laure Boulesteix posted to review perspective opinion bioinformatics by Zephyrus on 2009-11-30 00:05:18 as along with 5 people and 1 group burak phoenixzxl dullhunk neils druvus Journal picks
	Introduction to Bioinformatics [My Copy] (22 Nov 2009) by Sabu M. Thampi posted to text bioinformatics by itmeson on 2009-11-28 23:08:57 as
	De novo prediction of structured RNAs from genomic sequences. [My Copy] Trends in biotechnology (24 November 2009) by Jan Gorodkin, Ivo L. Hofacker, Elfar Torarinsson, Zizhen Yao, Jakob H. Havgaard, Walter L. Ruzzo posted to bioinformatics by ppgardne to the group Journal picks on 2009-11-28 17:45:31 as
	Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach. [My Copy] BMC bioinformatics, Vol. 8 (03 August 2007), 284. by Carson Andorf, Drena Dobbs, Vasant Honavar posted to software protein genomics bioinformatics annotation ai by operon on 2009-11-28 14:17:30 as
	Using galaxy to perform large-scale interactive data analyses. [My Copy] Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.], Vol. Chapter 10 (September 2007) by James Taylor, Ian Schenck, Dan Blankenberg, Anton Nekrutenko posted to software python bioinformatics by operon on 2009-11-28 14:15:45 as along with 1 person idoerg
	Using PhyloCon to identify conserved regulatory motifs. [My Copy] Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.], Vol. Chapter 2 (September 2007) by Ting Wang posted to transcription software sequence regulation phylogenetics motifs evolution bioinformatics by operon on 2009-11-28 14:15:19 as along with 1 person maximilianh
	THOR: targeted high-throughput ortholog reconstructor. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 19. (1 October 2007), pp. 2622-2624. by Matthew N. Bainbridge, René L. Warren, An He, Mikhail Bilenky, A. Gordon Robertson, Steven J. Jones posted to software ortholog method evolution bioinformatics by operon on 2009-11-28 14:11:30 as along with 1 person guhjy
	Statistical power of phylo-HMM for evolutionarily conserved element detection. [My Copy] BMC bioinformatics, Vol. 8 (05 October 2007), 374. by Xiaodan Fan, Jun Zhu, Eric E. Schadt, Jun S. Liu posted to transposon statistics software phylogenetics methods hmm evolution bioinformatics by operon on 2009-11-28 13:59:51 as along with 3 people and 1 group idonaldson pradiptaray isimpson BergmanLab
	A practical guide to the art of RNA gene prediction. [My Copy] Briefings in bioinformatics, Vol. 8, No. 6. (4 November 2007), pp. 396-414. by Irmtraud M. Meyer posted to rna prediction gene_prediction annotation by operon on 2009-11-28 13:34:26 as along with 9 people NicholasErho thegoose2 zanexu penka wenhan GustavoLacerda xili03 xingxu tharris
	Machine learning in bioinformatics [My Copy] Brief Bioinform, Vol. 7, No. 1. (1 March 2006), pp. 86-112. by Pedro Larranaga, Borja Calvo, Roberto Santana, et al.Concha Bielza, Josu Galdiano, Inaki Inza, Jose A. Lozano, Ruben Armananzas, Guzman Santafe, Aritz Perez, Victor Robles posted to vector support machines machine learning bioinformatics by biointelligence on 2009-11-28 04:44:43 as along with 9 people and 2 groups jperkins akastrin svozil jfr yas caporaso rsantana dimatura xili03 T_lab biomedical-nlp
	A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2149-2156. by Henrik Bengtsson, Pratyaksha Wirapati, Terence P. Speed posted by 6 people shikin djkt pkonings rdiaz daforerog neils
	SHREC: a short-read error correction method [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2157-2163. by Jan Schroder, Heiko Schroder, Simon J. Puglisi, Ranjan Sinha, Bertil Schmidt posted by 15 people heliopais adthrasher dakelley skembel thegoose katholt sotacam djkt rtogawa torfinnnome Journal picks natstreet druvus n00c jmeppley
	Comments on sequence normalization of tiling array expression [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2171-2173. by Don Gilbert, Andreas Rechtsteiner posted by 5 people humburg djkt rdiaz Bioinformatics dswan
	Automated protein (re)sequencing with MS/MS and a homologous database yields almost full coverage and accuracy [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2174-2180. by Xiaowen Liu, Yonghua Han, Denis Yuen, Bin Ma posted by 2 people brianb nuin
	Reliable prediction of protein thermostability change upon double mutation from amino acid sequence [My Copy] Bioinformatics, Vol. 25, No. 17., pp. 2181-2187. by Liang-Tsung Huang, Michael M. Gromiha
	GR-Aligner: an algorithm for aligning pairwise genomic sequences containing rearrangement events [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2188-2193. by Te-Chin Chu, Tsunglin Liu, D. T. Lee, Greg C. Lee, Arthur C. Shih posted by 4 people n00c torfinnnome nlapalu jmeppley
	SOLpro: accurate sequence-based prediction of protein solubility [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2200-2207. by Christophe N. Magnan, Arlo Randall, Pierre Baldi posted by 1 person nlapalu
	Inferring progression models for CGH data [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2208-2215. by Jun Liu, Nirmalya Bandyopadhyay, Sanjay Ranka, M. Baudis, Tamer Kahveci posted by 6 people davfre sameersoi pkonings rdiaz nuin bgordski
	Prestige centrality-based functional outlier detection in gene expression analysis [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2222-2228. by Ali Torkamani, Nicholas J. Schork posted by 4 people natstreet rdiaz TRHvidsten guhjy
	Reconstructing signaling pathways from RNAi data using probabilistic Boolean threshold networks. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2229-2235. by Lars Kaderali, Eva Dazert, Ulf Zeuge, Michael Frese, Ralf Bartenschlager posted by 2 people ptrobajo fastjoe23
	Reconstruct modular phenotype-specific gene networks by knowledge-driven matrix factorization. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2236-2243. by Xuerui Yang, Yang Zhou, Rong Jin, Christina Chan posted by 3 people ekotelnikova ptrobajo guhjy
	A CitationRank algorithm inheriting Google technology designed to highlight genes responsible for serious adverse drug reaction. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2244-2250. by Lun Yang, Langlai Xu, Lin He posted by 5 people ashishanand reyez nlapalu ylem guhjy
	A survey of across-target bioactivity results of small molecules in PubChem [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2251-2255. by Lianyi Han, Yanli Wang, Stephen H. Bryant posted by 3 people reyez nickolay Journal picks
	A genetic programming approach for Burkholderia Pseudomallei diagnostic pattern discovery [My Copy] Bioinformatics, Vol. 25, No. 17., pp. 2256-2262. by Zheng Rong R. Yang, Ganjana Lertmemongkolchai, Gladys Tan, Philip L. Felgner, Richard Titball
	Biophysical annotation and representation of CellML models [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2263-2270. by S. M. Wimalaratne, M. D. B. Halstead, C. M. Lloyd, E. J. Crampin, P. F. Nielsen posted by 3 people dagmar guhjy allysonlister
	IMG ER: a system for microbial genome annotation expert review and curation [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2271-2278. by Victor M. Markowitz, Konstantinos Mavromatis, Natalia N. Ivanova, I-Min A. Chen, Ken Chu, Nikos C. Kyrpides posted by 5 people kiekyon Thaverkamp neils natstreet druvus
	A fast hybrid short read fragment assembly algorithm [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2279-2280. by Bertil Schmidt, Ranjan Sinha, Bryan Beresford-Smith, Simon J. Puglisi posted by 19 people torfinnnome hzoltan cthachuk orzenil GustavoLacerda APRegier dakelley katholt GeeSharpMinor dayjm djkt Bioinformatics dswan Journal picks pachorip natstreet druvus n00c jmeppley
	FancyGene: dynamic visualization of gene structures and protein domain architectures on genomic loci [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2281-2282. by Davide Rambaldi, Francesca D. Ciccarelli posted by 2 people guhjy Journal picks
	Efficient stochastic simulation of reaction-diffusion processes via direct compilation [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2289-2291. by Mieszko Lis, Maxim N. Artyomov, Srinivas Devadas, Arup K. Chakraborty posted by 1 person jvb
	libAnnotationSBML: a library for exploiting SBML annotations. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2292-2293. by Neil Swainston, Pedro Mendes posted by 9 people guhjy irenas neilswainston jonathancooper jmuhlich jvb NaCTeM Effie dullhunk

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rna	213
bioinformatics	196
review	127
biophysics	90
protein_structure	86
structure	86
evolution	86
structure_prediction	64
algorithms	56
computational_biology	53
secondary_structure	53
protein	43
folding	41
classification	38
ncrna	35
casp	35
drug	32
docking	32
protein_interactions	31
genome	30
function	29
microrna	27
cafasp	26
sequence_alignment	25
protein_function	24
software	23
views	22
servers	22
comparative_modeling	19
model_assessment	19
statistical_potentials	19
biology	18
structural_genomics	18
databases	17
ribosome	16
nmr	16
disease	16
protein_domains	15
ligand	15
protein_folding	15
bioengineering	14
clustering	14
protein_fragments	14
ab-initio	12
structure_alignment	11
genes	11
prediction	11
dna	10
statistics	9
snp	9
alignment	9
model_evaluation	8
membrane_protein	7
experimental	7
gene_expression	6
systems_biology	6
microarray	6
phylogeny	6
virus	5
mechano_receptors	5
foce_field	5
sequence	5
protein_threading	5
motif	5
molecular_dynamics	5
text_mining	4
ribozyme	4
discovery	4
rotamers	4
sequence-structure	4
protein_complexes	3
cancer	3
comparative_docking	3
server	3
news	3
human	3
interaction	3
meeting	3
immunology	2
programming	2
hypotesis	2
allosteric	2
proteomics	2
editorial	2
pleiotropy	2
pdb	2
hts	2
trypsin	1
ontology	1
loop_modeling	1
proteases	1
metabolomics	1
opensourcebiology	1
nucleosome	1
side_chains	1
protein_disorder	1
protein_design	1
nanotechnology	1
membrane	1
stability	1
disulfide	1
position	1
web20	1
malaria	1
congress	1
synthetic_biology	1
fold	1
glyco	1
dynamics	1
machine_learning	1
mysql	1
aminoacid_alphabets	1
metagenomics	1
php	1
molecular_mimicry	1
stem_cells	1
consensus	1
plant	1

marcius's watchlist [more than 800 articles] Export

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