marck's library 167 articles Export

	Organization of Physical Interactomes as Uncovered by Network Schemas [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (24 October 2008), e1000203. by Eric Banks, Elena Nabieva, Bernard Chazelle, Mona Singh posted to protein-interaction-network by marck on 2008-10-28 00:57:09 as along with 4 people sivaramanb roys grahamc chad_davis
	An integrated system for studying residue coevolution in proteins [My Copy] Bioinformatics, Vol. 24, No. 2. (15 January 2008), pp. 290-292. by Kevin Y. Yip, Prianka Patel, Philip M. Kim, Donald M. Engelman, Drew Mcdermott, Mark Gerstein posted to cma by marck on 2008-10-28 00:55:46 as along with 6 people and 1 group leemond31 qluo sobolevnrm chrys friendpine ca3295 baker-group
	Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites [My Copy] PLoS Comput Biol, Vol. 4, No. 1. (11 January 2008), e7. by Daniela Raijman, Ron Shamir, Amos Tanay posted to evolution transcription_regulation by marck on 2008-10-28 00:51:51 as along with 8 people and 1 group xili03 aalibes sebastien_vigneau lusk Garamonfok nklee maximilianh emptyhb BioinfoCIPF
	Energy-dependent fitness: A quantitative model for the evolution of yeast transcription factor binding sites [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 34. (26 August 2008), pp. 12376-12381. by Ville Mustonen, Justin Kinney, Curtis G. Callan, Michael LÃ¤ssig posted to interaction-specificity by marck on 2008-10-26 12:20:38 as along with 5 people lusk emptyhb bmajoros bpcusack zwang
	The structure of the yeast plasma membrane SNARE complex reveals destabilizing water-filled cavities. [My Copy] The Journal of biological chemistry, Vol. 283, No. 2. (11 January 2008), pp. 1113-1119. by P. Strop, S. E. Kaiser, M. Vrljic, A. T. Brunger posted to snare by marck on 2008-10-25 10:30:26 as
	Surface Sites for Engineering Allosteric Control in Proteins [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 438-442. by Jeeyeon Lee, Madhusudan Natarajan, Vishal C. Nashine, et al.Michael Socolich, Tina Vo, William P. Russ, Stephen J. Benkovic, Rama Ranganathan posted to cma by marck on 2008-10-25 09:15:52 as along with 7 people and 4 groups sobolevnrm jbhiatt lflorez cactus i000 barry paulschlesinger baker-group structural_bioinformatics McCammon Bioinformatics
	Cytokine-Induced Signaling Networks Prioritize Dynamic Range over Signal Strength [My Copy] Cell, Vol. 135, No. 2. (17 October 2008), pp. 343-354. by K. Janes, H. Reinhardt, M. Yaffe posted to network-analysis by marck on 2008-10-18 05:25:53 as along with 7 people dkoveal stasaki tklee rdiaz sg45653 jjray renatomilani
	Remeasuring the Double Helix [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 446-449. by Rebecca S. Mathew-Fenn, Rhiju Das, Pehr A. Harbury posted to transcription_regulation by marck on 2008-10-17 03:33:41 as along with 6 people and 2 groups sobolevnrm jbhiatt Elena_Zubova melting kshundyak samjlord baker-group moernerlab
	Higher-Order Cellular Information Processing with Synthetic RNA Devices [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 456-460. by Maung N. Win, Christina D. Smolke posted to synthetic-biology by marck on 2008-10-17 03:11:13 as along with 7 people jbhiatt austin hrogers lflorez grahamc alexknight erel10
	Phosphorylation Networks Regulating JNK Activity in Diverse Genetic Backgrounds [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 453-456. by Chris Bakal, Rune Linding, Flora Llense, et al.Elleard Heffern, Enrique Martin-Blanco, Tony Pawson, Norbert Perrimon posted to genetic-interaction systems-biology by marck on 2008-10-17 03:05:32 as along with 5 people roys lptolik renatomilani zwang neils
	Conservation and Rewiring of Functional Modules Revealed by an Epistasis Map in Fission Yeast [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 405-410. by Assen Roguev, Sourav Bandyopadhyay, Martin Zofall, et al.Ke Zhang, Tamas Fischer, Sean R. Collins, Hongjing Qu, Michael Shales, Han-Oh Park, Jacqueline Hayles, Kwang-Lae Hoe, Dong-Uk Kim, Trey Ideker, Shiv I. Grewal, Jonathan S. Weissman, Nevan J. Krogan posted to experiment-large-scale genetic-interaction by marck on 2008-10-17 03:01:59 as along with 15 people dakelley biomcgary ajbattle nzm Keksle jbhiatt lflorez roys sjung tmmurali zwang caseybrown emptyhb bpcusack brembs
	GENETICS: It's the Sequence, Stupid! [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 380-381. by Hilary A. Coller, Leonid Kruglyak posted to transcription_regulation by marck on 2008-10-17 02:40:00 as along with 10 people and 4 groups siebert GustavoLacerda Zephyrus cisevol isimpson dlobo bpcusack reyez djkt ptrobajo Roswell Cancer Crosstalk cis-regulatory-evolution BergmanLab GEB
	BIOCHEMISTRY: Not Comparable, But Complementary [My Copy] Science, Vol. 322, No. 5898. (3 October 2008), pp. 56-57. by Lars J. Jensen, Peer Bork posted to protein-interaction protein-interaction-network network-analysis by marck on 2008-10-03 07:50:20 as along with 3 people lfriedl dullhunk larsjuhljensen
	Phylogenetic profiles reveal evolutionary relationships within the “twilight zone” of sequence similarity [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 36. (9 September 2008), pp. 13474-13479. by Gue S. Chang, Yoojin Hong, Kyung D. Ko, et al.Gaurav Bhardwaj, Edward C. Holmes, Randen L. Patterson, Damian B. van Rossum posted to blast by marck on 2008-09-13 01:17:06 as along with 2 people operon bpcusack
	Cascading failure and robustness in metabolic networks. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (2 September 2008) by Ashley G G. Smart, Luis A N A. Amaral, Julio M M. Ottino posted to network-analysis by marck on 2008-09-13 01:16:28 as along with 2 people icircle yas
	Built-in loops allow versatility in domain–domain interactions: Lessons from self-interacting domains [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 36. (2008), pp. 13292-13297. by Eyal Akiva, Zohar Itzhaki, Hanah Margalit posted to domain-interaction by marck on 2008-09-13 01:14:54 as along with 5 people pablocarb cactus winterschlaefer icq242500260 zwang
	Multiple sequence alignment with the Clustal series of programs [My Copy] Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3497-3500. by Ramu Chenna, Hideaki Sugawara, Tadashi Koike, et al.Rodrigo Lopez, Toby J. Gibson, Desmond G. Higgins, Julie D. Thompson posted to msa by marck on 2008-08-30 09:37:29 as along with 8 people and 1 group vprieto BioNica Lombardo_7 miguel chad_davis beatrizfernandez raylim xingxu Microbial-Ecology
	Clustal W and Clustal X version 2.0 [My Copy] Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2947-2948. by M. A. Larkin, G. Blackshields, N. P. Brown, et al.R. Chenna, P. A. McGettigan, H. McWilliam, F. Valentin, I. M. Wallace, A. Wilm, R. Lopez, J. D. Thompson, T. J. Gibson, D. G. Higgins posted to msa by marck on 2008-08-30 09:37:14 as along with 18 people l00cas vprieto Copper_Calcio TLVincent tomjad BioNica udivi Keksle hpm druvus treangen jwm cassj lisa1 ryanraaum bmaust alanrw mschofie
	What are artificial neural networks? [My Copy] Nature biotechnology, Vol. 26, No. 2. (February 2008), pp. 195-197. by Anders Krogh posted to ann kdd by marck on 2008-08-16 02:00:47 as along with 14 people lrachman daforerog Yanno guhjy dullhunk zwang cabbagezs asddd sci91078 jfr adacier ale mjoach bertelsen
	Model-based prediction of sequence alignment quality [My Copy] Bioinformatics, Vol. 24, No. 19. (1 October 2008), pp. 2165-2171. by Virpi Ahola, Tero Aittokallio, Mauno Vihinen, Esa Uusipaikka posted to msa by marck on 2008-08-06 07:21:25 as along with 3 people druvus treangen nuin
	Powerful fusion: PSI-BLAST and consensus sequences [My Copy] Bioinformatics, Vol. 24, No. 18. (15 September 2008), pp. 1987-1993. by Dariusz Przybylski, Burkhard Rost posted to psi-blast by marck on 2008-08-06 07:16:22 as along with 1 person yylin
	VADAR: a web server for quantitative evaluation of protein structure quality [My Copy] Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3316-3319. by Leigh Willard, Anuj Ranjan, Haiyan Zhang, et al.Hassan Monzavi, Robert F. Boyko, Brian D. Sykes, David S. Wishart posted to webserver structure by marck on 2008-08-04 08:35:54 as along with 1 person flbarroso
	Cytoprophet: a Cytoscape plug-in for protein and domain interaction networks inference. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 19. (1 October 2008), pp. 2265-2266. by Faruck Morcos, Charles Lamanna, Marcin Sikora, Jesús Izaguirre posted to domain-interaction by marck on 2008-07-30 09:27:31 as along with 5 people badi guhjy grahamc phoenixzxl natstreet
	Assembly reflects evolution of protein complexes. [My Copy] Nature, Vol. 453, No. 7199. (26 June 2008), pp. 1262-1265. by E. D. Levy, E. Boeri Erba, C. V. Robinson, S. A. Teichmann posted to complex-assembly evolution protein-interaction-theory by marck on 2008-07-19 06:18:51 as along with 11 people and 1 group robfsouza chica noraziz chad_davis psique paulschlesinger neils jwm zwang faion phoenixzxl KeatingJClub
	Dichotomies between computational and mathematical models [My Copy] Nature Biotechnology, Vol. 26, No. 7., pp. 737-738. by Anthony C. Hunt, Glen E. P. Ropella, Sunwoo Park, Jesse Engelberg posted to math by marck on 2008-07-19 03:55:40 as
	The Origins of Specificity in Polyketide Synthase Protein Interactions [My Copy] PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e186. by Mukund Thattai, Yoram Burak, Boris I. Shraiman posted to protein-interaction-theory specificity by marck on 2008-07-15 00:59:03 as along with 2 people zwang phoenixzxl
	Design of multi-specificity in protein interfaces. [My Copy] PLoS computational biology, Vol. 3, No. 8. (1 August 2007), e164. by Elisabeth L. Humphris, Tanja Kortemme posted to interaction-specificity protein-engineering protein-protein-interface by marck on 2008-07-11 04:00:01 as along with 9 people and 3 groups bmduggan allmensch msuarezdiez jwm bicko Einat dpollard Scis0000002 phoenixzxl structural_bioinformatics Bioinformatics EisenLab
	Genetic-linkage mapping of complex hereditary disorders to a whole-genome molecular-interaction network. [My Copy] Genome research (16 April 2008) by Ivan Iossifov, Tian Zheng, Miron Baron, T Conrad C. Gilliam, Andrey Rzhetsky posted to genetic-interaction integrated by marck on 2008-07-11 03:59:29 as along with 2 people daforerog guhjy
	Evaluating conformational changes in protein structures binding RNA. [My Copy] Proteins, Vol. 70, No. 4. (March 2008), pp. 1518-1526. by J. J. Ellis, S. Jones posted to rna-protein-interactions by marck on 2008-07-10 05:49:56 as
	Bioinformatic method for protein thermal stabilization by structural entropy optimization -- Bae et al., 10.1073/pnas.0800938105 -- Proceedings of the National Academy of Sciences [My Copy] posted to protein-engineering structure by marck on 2008-07-09 02:18:30 as
	Setting the standard in synthetic biology [My Copy] Nat Biotech, Vol. 26, No. 7. (July 2008), pp. 771-774. by Adam Arkin posted to synthetic-biology by marck on 2008-07-09 02:15:29 as along with 9 people abhishek_tiwari Scis0000002 fgibson TobiasAbenius Vincent_Rouilly guhjy dbikard grahamc austin
	Refinement and standardization of synthetic biological parts and devices [My Copy] Nat Biotech, Vol. 26, No. 7. (July 2008), pp. 787-793. by Barry Canton, Anna Labno, Drew Endy posted to synthetic-biology by marck on 2008-07-09 02:15:07 as along with 6 people dbikard Vincent_Rouilly gvillar guhjy austin grahamc
	Extracting Sequence Motifs and the Phylogenetic Features of SNARE-Dependent Membrane Traffic [My Copy] Traffic, Vol. 7, No. 8. (August 2006), pp. 1104-1118. by Yoshizawa, C. Akiyasu, Kawashima, et al. Shuichi, Okuda, Shujiro, Fujita, Masashi, Itoh, Masumi, Moriya, Yuki, Hattori, Masahiro, Kanehisa, Minoru posted to coiled-coil snare by marck on 2008-07-07 01:39:59 as
	Bimolecular fluorescence complementation (BiFC) analysis of protein interactions in Caenorhabditis elegans. [My Copy] Methods (San Diego, Calif.) (26 June 2008) by Susan M M. Hiatt, Y John J. Shyu, Holli M M. Duren, Chang-Deng D. Hu posted to __bifc interactions-experiment by marck on 2008-07-07 01:34:15 as along with 3 people and 1 group thegoose2 guhjy tharris C. elegans / WormBase
	Quantitative Measurements of Protein Interactions in a Crowded Cellular Environment [My Copy] Anal. Chem. (3 July 2008) by Edwin Li, Jesse Placone, Mikhail Merzlyakov, Kalina Hristova posted to interactions-experiment by marck on 2008-07-05 05:45:01 as along with 1 person brianb
	Increasing the reliability of protein interactomes. [My Copy] Drug discovery today (30 June 2008) by Hon Nian N. Chua, Limsoon Wong posted to protein-interaction-network by marck on 2008-07-05 02:46:54 as along with 3 people anf guhjy zimbo1
	Phylogenetic Signal in the Eukaryotic Tree of Life [My Copy] Science, Vol. 321, No. 5885. (4 July 2008), pp. 121-123. by Michael J. Sanderson posted to phylogenetic by marck on 2008-07-04 03:52:27 as along with 8 people and 3 groups cmzmasek caseybrown dchughes stajich gulsacan jlgreen aprasad djkt Mycology Green Lab iSEEM
	Protein multiple sequence alignment. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 484 (2008), pp. 379-413. by C. B. Do, K. Katoh posted to msa by marck on 2008-07-03 10:58:56 as
	Ykt6p Is a Multifunctional Yeast R-SNARE That Is Required for Multiple Membrane Transport Pathways to the Vacuole [My Copy] Mol. Biol. Cell, Vol. 14, No. 5. (1 May 2003), pp. 1868-1881. by Youngseok Kweon, Anca Rothe, Elizabeth Conibear, Tom H. Stevens posted to snare by marck on 2008-07-02 06:10:13 as
	Functions of SNAREs in intracellular membrane fusion and lipid bilayer mixing [My Copy] J Cell Sci, Vol. 118, No. 17. (1 September 2005), pp. 3819-3828. by Christian Ungermann, Dieter Langosch posted to snare by marck on 2008-07-02 06:09:44 as
	Yeast Golgi SNARE interactions are promiscuous [My Copy] J Cell Sci, Vol. 113, No. 1. (1 January 2000), pp. 145-152. by M. M. Tsui, D. K. Banfield posted to snare specificity by marck on 2008-07-02 06:09:21 as
	i-SNAREs: inhibitory SNAREs that fine-tune the specificity of membrane fusion [My Copy] J. Cell Biol., Vol. 164, No. 1. (5 January 2004), pp. 79-88. by Oleg Varlamov, Allen Volchuk, Vahid Rahimian, et al.Claudia A. Doege, Fabienne Paumet, William S. Eng, Nancy Arango, Francesco Parlati, Mariella Ravazzola, Lelio Orci, Thomas H. Sollner, James E. Rothman posted to snare by marck on 2008-07-02 06:06:14 as
	What is the role of SNARE proteins in membrane fusion? [My Copy] Am J Physiol Cell Physiol, Vol. 285, No. 2. (1 August 2003), pp. C237-249. by Joseph G. Duman, John G. Forte posted to snare by marck on 2008-07-02 06:05:43 as
	SNARE Interactions Are Not Selective. IMPLICATIONS FOR MEMBRANE FUSION SPECIFICITY [My Copy] J. Biol. Chem., Vol. 274, No. 9. (26 February 1999), pp. 5649-5653. by Bin Yang, Lino Gonzalez, Rytis Prekeris, Martin Steegmaier, Raj J. Advani, Richard H. Scheller posted to snare specificity by marck on 2008-07-02 05:42:19 as along with 1 person yarikson
	Mixed and Non-cognate SNARE Complexes. CHARACTERIZATION OF ASSEMBLY AND BIOPHYSICAL PROPERTIES [My Copy] J. Biol. Chem., Vol. 274, No. 22. (28 May 1999), pp. 15440-15446. by Dirk Fasshauer, Wolfram Antonin, Martin Margittai, Stefan Pabst, Reinhard Jahn posted to snare specificity by marck on 2008-07-02 05:39:14 as
	Human disease: Joining the dots from SNPs to proteins [My Copy] Nat Rev Genet, Vol. 9, No. 7. (July 2008), pp. 496-496. by Louisa Flintoft posted to snp by marck on 2008-07-02 03:43:21 as along with 3 people ilyashl ssgong cabbagesofdoom
	Co-Evolving Motions at Protein−Protein Interfaces of Two-Component Signaling Systems Identified by Covariance Analysis† [My Copy] Biochemistry, Vol. 47, No. 30. (1 July 2008), pp. 7782-7784. by Hendrik Szurmant, Benjamin G. Bobay, Robert A. White, et al.Daniel M. Sullivan, Richele J. Thompson, Terence Hwa, James A. Hoch, John Cavanagh posted to cma by marck on 2008-07-02 03:42:48 as along with 5 people and 1 group orr raik neils paulschlesinger pansapiens KeatingJClub
	Global investigation of protein-protein interactions in yeast Saccharomyces cerevisiae using re-occurring short polypeptide sequences. [My Copy] Nucleic acids research (27 June 2008) by S Pitre, C North, M Alamgir, et al.M Jessulat, A Chan, X Luo, J R R. Green, M Dumontier, F Dehne, A Golshani posted to ppi-prediction by marck on 2008-07-02 03:41:15 as
	Identifying functional modules in protein-protein interaction networks: an integrated exact approach. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008) by M. T. Dittrich, G. W. Klau, A. Rosenwald, T. Dandekar, T. Müller posted to network-analysis by marck on 2008-07-02 03:39:54 as along with 2 people bootsy guhjy
	Selectional and Mutational Scope of Peptides Sequestering the Jun-Fos Coiled-Coil Domain. [My Copy] Journal of molecular biology (17 May 2008) by Urs B B. Hagemann, Jody M M. Mason, Kristian M M. Müller, Katja M M. Arndt posted to bzip coiled-coil by marck on 2008-07-02 03:38:03 as along with 3 people Lombardo_7 kgutwin kevinchannon

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rna-protein-interactions	22
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coiled-coil	14
db-go	11
protein-engineering	9
network-analysis	8
msa	7
genetic-interaction	6
protein-interaction-network	6
specificity	6
cma	5
structure	5
gene-func-prediction	4
integrated	4
synthetic-biology	4
domain-interaction	3
evolution	3
experiment-misc	3
interaction-specificity	3
metamorphic-proteins	3
protein-interaction-theory	3
protein-protein-interface	3
rna	3
transcription_regulation	3
__0layer	2
blast	2
domain-hamp	2
interactions-experiment	2
pathogen	2
phylogenetic	2
ppi-prediction	2
psi-blast	2
systems-biology	2
ann	1
__bifc	1
bzip	1
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complex-assembly	1
conserved-residue	1
db-goa	1
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domain-lim	1
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experiment-large-scale	1
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gene-expression	1
kdd	1
kinesin	1
linear-motif	1
math	1
microarray	1
ml-phylogenetic	1
omics	1
positive-selection	1
protein-interaction	1
protein-structure-prediction	1
protein-structure-theory	1
raxml	1
regulation	1
rna-rna-interactions	1
rnasep	1
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marck's library 167 articles Export

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