margaritis's stochasticity [74 articles] Export

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	Transcriptional infidelity promotes heritable phenotypic change in a bistable gene network. [My Copy] PLoS biology, Vol. 7, No. 2. (24 February 2009), e44. by Alasdair J. Gordon, Jennifer A. Halliday, Matthew D. Blankschien, Philip A. Burns, Fumio Yatagai, Christophe Herman posted to bistability fidelity stochasticity transcription by margaritis on 2009-03-09 10:37:52 as along with 8 people and 1 group Winzer ocs katiejclowers biomcgary emptyhb jjray bpcusack VGreiff Morgan Lab-KSU
	Predator-Prey Cycles from Resonant Amplification of Demographic Stochasticity [My Copy] Physical Review Letters, Vol. 94, No. 21. (2005) by A. J. Mckane, T. J. Newman posted to fluctuations predator-prey resonance stochasticity theory by margaritis on 2008-10-28 11:52:50 as
	A Stochastic Single-Molecule Event Triggers Phenotype Switching of a Bacterial Cell [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 442-446. by Paul J. Choi, Long Cai, Kirsten Frieda, X. Sunney Xie posted to bistability ecoli gene-expression lac-operon single-molecule stochasticity by margaritis on 2008-10-21 14:41:22 as along with 11 people and 1 group yyfwuhan balabu pkm stasaki jbhiatt lflorez jonesn cactus alexknight jjray samjlord moernerlab
	The stochastic nature of biochemical networks. [My Copy] Current opinion in biotechnology, Vol. 19, No. 4. (25 August 2008), pp. 369-374. by Vahid Shahrezaei, Peter S. Swain posted to fluctuations gene-expression noise review stochasticity by margaritis on 2008-09-04 16:17:00 as along with 3 people paulymer guhjy erel10
	Stochastic spineless expression creates the retinal mosaic for colour vision [My Copy] Nature, Vol. 440, No. 7081., pp. 174-180. by Mathias F. Wernet, Esteban O. Mazzoni, Arzu Ãelik, Dianne M. Duncan, Ian Duncan, Claude Desplan posted to development gene-expression stochasticity vision by margaritis on 2008-06-10 15:30:40 as
	Colored extrinsic fluctuations and stochastic gene expression [My Copy] Mol Syst Biol, Vol. 4 (6 May 2008) by Vahid Shahrezaei, Julien F. Ollivier, Peter S. Swain posted to extrinsic fluctuations noise stochasticity stochastic_simulations theory by margaritis on 2008-05-07 11:47:21 as along with 3 people chiufanlee jjray Ema
	Intrinsic noise, dissipation cost, and robustness of cellular networks: The underlying energy landscape of MAPK signal transduction [My Copy] Proceedings of the National Academy of Sciences (17 April 2008), 0708708105. by Saul Lapidus, Bo Han, Jin Wang posted to noise potential regulatory_network stochasticity by margaritis on 2008-04-25 15:01:52 as along with 4 people jjray biehl ddcttrl cactus
	Transcriptional control of noise in gene expression [My Copy] Proceedings of the National Academy of Sciences (19 March 2008), 0707904105. by Alvaro Sanchez, Jane Kondev posted to noise regulation stochasticity theory transcription by margaritis on 2008-04-07 10:58:23 as along with 7 people jjray balabu lambda ddcttrl austin sbottani inesdesantiago
	Stochasticity and cell fate. [My Copy] Science (New York, N.Y.), Vol. 320, No. 5872. (4 April 2008), pp. 65-68. by Richard Losick, Claude Desplan posted to bistability cell_fate review stochasticity by margaritis on 2008-04-07 10:48:31 as along with 9 people and 1 group guhjy pkm adamnellis Arjeny lukaswindhager balabu paulschlesinger davidlott josedavid GEB
	Stochastic switching as a survival strategy in fluctuating environments [My Copy] Nat Genet, Vol. 40, No. 4. (April 2008), pp. 471-475. by Murat Acar, Jerome T. Mettetal, Alexander van Oudenaarden posted to bistability noise stochasticity by margaritis on 2008-03-27 17:42:20 as along with 13 people and 1 group balabu lbnc stefanjanusz A_Olympia operon jjray gokhan dbikard bootsy qwermish fjvico osilander brianb GEB
	Effects of molecular memory and bursting on fluctuations in gene expression. [My Copy] Science (New York, N.Y.), Vol. 319, No. 5861. (18 January 2008), pp. 339-343. by Juan M. Pedraza, Johan Paulsson posted to bursting fluctuations gene-expression noise stochasticity by margaritis on 2008-01-18 11:07:20 as along with 10 people pmalkus inesdesantiago balicea cjeans heliopais roys sb_journal_club rschulz ddcttrl klo
	Fluctuations, pauses and backtracking in DNA transcription [My Copy] Biophys. J. (24 August 2007), biophysj.107.105767. by Margaritis Voliotis, Netta Cohen, Carmen Molina-Paris, Tanniemola Liverpool posted to backtracking fluctuations noise stochasticity transcription by margaritis on 2008-01-09 11:22:22 as
	Stochastic gene expression out-of-steady-state in the cyanobacterial circadian clock [My Copy] Nature, Vol. 450, No. 7173. (20 December 2007), pp. 1249-1252. by Jeffrey R. Chabot, Juan M. Pedraza, Prashant Luitel, Alexander van Oudenaarden posted to experiment gene-expression noise stochasticity by margaritis on 2008-01-08 11:50:03 as along with 5 people inesdesantiago austin balabu cactus kintoki
	Molecular level stochastic model for competence cycles in Bacillus subtilis [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 45. (6 November 2007), pp. 17582-17587. by Daniel Schultz, Ben, Jose N. Onuchic, Peter G. Wolynes posted to bsubtilis competence fluctuations noise stochasticity by margaritis on 2007-11-07 17:44:50 as along with 3 people jjray balabu lshaw
	Dissecting Timing Variability in Yeast Meiosis [My Copy] Cell, Vol. 131, No. 3. (2 November 2007), pp. 544-556. by Iftach Nachman, Aviv Regev, Sharad Ramanathan posted to experiment fluctuations meiosis noise stochasticity yeast by margaritis on 2007-11-07 17:36:48 as along with 2 people and 1 group dpollard balabu EisenLab
	Living with noisy genes: how cells function reliably with inherent variability in gene expression. [My Copy] Annual review of biophysics and biomolecular structure, Vol. 36 (2007), pp. 413-434. by Narendra Maheshri, Erin K. O'Shea posted to fluctuations noise review stochasticity by margaritis on 2007-11-01 14:16:52 as along with 6 people guhjy bertelsen Zephyrus marcio jjray madhadron
	Symmetry and Stochastic Gene Regulation [My Copy] Physical Review Letters, Vol. 99, No. 10. (2007) by Alexandre F. Ramos, José E. M. Hornos posted to fluctuations gene-expression noise stochasticity theory by margaritis on 2007-10-05 12:40:56 as
	Nonequilibrium Statistical Mechanics of Dividing Cell Populations [My Copy] Physical Review Letters, Vol. 99, No. 13. (2007) by Naama Brenner, Yair Shokef posted to cell_division fluctuations stochasticity theory by margaritis on 2007-09-28 16:31:45 as
	Living with Noisy Genes: How Cells unction Reliably with Inherent Variability in Gene Expression [My Copy] Annual Review of Biophysics and Biomolecular Structure, Vol. 36, No. 1., 413. by Maheshri posted to fluctuations noise review stochasticity by margaritis on 2007-09-07 13:33:15 as
	A hybrid multiscale Monte Carlo algorithm (HyMSMC) to cope with disparity in time scales and species populations in intracellular networks [My Copy] BMC Bioinformatics, Vol. 8 (24 May 2007), 175. by Asawari Samant, Babatunde A. Ogunnaike, Dionisios G. Vlachos posted to fluctuations noise stochasticity stochastic_simulations theory by margaritis on 2007-08-31 18:02:40 as
	Combinatorial promoter design for engineering noisy gene expression [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 31. (31 July 2007), pp. 12726-12731. by Kevin F. Murphy, GÃ¡bor BalÃ¡zsi, James J. Collins posted to experiment fluctuations gene-expression noise stochasticity yeast by margaritis on 2007-08-01 12:17:17 as along with 2 people bertelsen jjray
	Frequency domain analysis of noise in autoregulated gene circuits. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 8. (15 April 2003), pp. 4551-4556. by Michael L. Simpson, Chris D. Cox, Gary S. Sayler posted to fluctuations gene-expression gene-networks noise spectra stochasticity theory by margaritis on 2007-07-13 17:00:59 as along with 6 people sjayanthi jjray rklancer kfm9876 dylanwalker marcio
	Attenuation of noise in ultrasensitive signaling cascades. [My Copy] Biophys J, Vol. 82, No. 6. (June 2002), pp. 2943-2950. by M. Thattai, A. van Oudenaarden posted to fluctuations gene-expression noise stochasticity theory by margaritis on 2007-07-13 14:12:10 as
	Noise in Gene Expression Determines Cell Fate in Bacillus subtilis. [My Copy] Science (14 June 2007) by Hédia Maamar, Arjun Raj, David Dubnau posted to bsubtilis experiment fluctuations noise stochasticity by margaritis on 2007-07-09 18:06:07 as along with 4 people jjray sebastien_vigneau cjeans cabbagezs
	Stochastic gene expression as a many-body problem [My Copy] PNAS, Vol. 100, No. 5. (4 March 2003), pp. 2374-2379. by Masaki Sasai, Peter G. Wolynes posted to fluctuations gene-expression noise stochasticity theory by margaritis on 2007-07-09 11:51:07 as along with 3 people malkocb ddcttrl joseph_x_zhou
	Signal Detection, Modularity, and the Correlation between Extrinsic and Intrinsic Noise in Biochemical Networks [My Copy] Physical Review Letters, Vol. 97, No. 6. (2006) by Sorin T. Nicola, Patrick B. Warren, Pieter posted to fluctuations gene-expression noise stochasticity theory by margaritis on 2007-07-09 11:48:45 as
	Noisy signal amplification in ultrasensitive signal transduction. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 2. (11 January 2005), pp. 331-336. by T. Shibata, K. Fujimoto posted to fluctuations gene-expression gene-networks noise stochasticity theory by margaritis on 2007-07-09 11:46:44 as along with 3 people rklancer imouthesmp lingchong
	Programmed population control by cell-cell communication and regulated killing. [My Copy] Nature, Vol. 428, No. 6985. (22 April 2004), pp. 868-871. by L. You, R. S. Cox, R. Weiss, F. H. Arnold posted to experiment fluctuations gene-expression gene-networks noise robustness stochasticity by margaritis on 2007-06-14 16:11:07 as along with 5 people rklancer tuck johncumbers dbikard discreteonyxorb
	Stochastic gene expression in a lentiviral positive-feedback loop: HIV-1 Tat fluctuations drive phenotypic diversity. [My Copy] Cell, Vol. 122, No. 2. (29 July 2005), pp. 169-182. by L. S. Weinberger, J. C. Burnett, J. E. Toettcher, A. P. Arkin, D. V. Schaffer posted to experiment fluctuations gene-expression hiv noise stochasticity by margaritis on 2007-06-14 16:03:45 as along with 3 people rklancer lingchong balabu
	Diffusion of transcription factors can drastically enhance the noise in gene expression. [My Copy] Biophys J, Vol. 91, No. 12. (15 December 2006), pp. 4350-4367. by J. S. van Zon, M. J. Morelli, S. Tănase-Nicola, P. R. ten Wolde posted to bursting fluctuations gene-expression noise simulations stochasticity theory by margaritis on 2007-06-11 11:23:37 as along with 3 people jjray balabu ddcttrl
	Transient Dynamics of Genetic Regulatory Networks [My Copy] Biophys. J., Vol. 92, No. 10. (15 May 2007), pp. 3501-3512. by Matthew R. Bennett, Dmitri Volfson, Lev Tsimring, Jeff Hasty posted to fluctuations gene-expression noise stochasticity theory by margaritis on 2007-06-11 11:17:17 as along with 3 people lshaw ibschwartz dylan77
	Effective Temperature in Stochastic Kinetics and Gene Networks [My Copy] Biophys. J., Vol. 91, No. 1. (1 July 2006), pp. 84-94. by Ting Lu, Jeff Hasty, Peter G. Wolynes posted to fluctuations gene-expression noise stochasticity theory by margaritis on 2007-06-11 11:16:43 as along with 2 people kupopo ddcttrl
	Eukaryotic Transcription: What Does It Mean for a Gene to Be 'on'? [My Copy] Current Biology, Vol. 16, No. 10. (23 May 2006), pp. R371-R373. by Ido Golding, Edward C. Cox posted to bursting fluctuations noise stochasticity transcription by margaritis on 2007-05-06 17:42:32 as along with 1 person and 1 group cmm FAB-lab
	Noisy information processing through transcriptional regulation. [My Copy] Proc Natl Acad Sci U S A (9 April 2007) by Eric Libby, Theodore J J. Perkins, Peter S S. Swain posted to fluctuations information-theory noise stochasticity theory by margaritis on 2007-05-01 18:28:56 as along with 2 people jjray shigepong
	Deterministic characterization of stochastic genetic circuits [My Copy] PNAS, Vol. 104, No. 18. (1 May 2007), pp. 7402-7407. by Matthew Scott, Terence Hwa, Brian Ingalls posted to fluctuations noise stochasticity theory by margaritis on 2007-05-01 18:21:12 as along with 2 people jjray balabu
	Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations. [My Copy] Biophys J, Vol. 81, No. 6. (December 2001), pp. 3116-3136. by T. B. Kepler, T. C. Elston posted to fluctuations noise stochasticity theory by margaritis on 2007-05-01 16:44:54 as along with 2 people monod jjray
	Phenotypic Consequences of Promoter-Mediated Transcriptional Noise [My Copy] Molecular Cell, Vol. 24, No. 6. (28 December 2006), pp. 853-865. by William J. Blake, Gabor Balazsi, Michael A. Kohanski, et al.Farren J. Isaacs, Kevin F. Murphy, Yina Kuang, Charles R. Cantor, David R. Walt, James J. Collins posted to bursting experiment noise phenotype promoter stochasticity by margaritis on 2007-03-27 13:41:53 as along with 3 people and 1 group emilyhare dbikard timflutre EisenLab
	An excitable gene regulatory circuit induces transient cellular differentiation. [My Copy] Nature, Vol. 440, No. 7083. (23 March 2006), pp. 545-550. by Gã¼rol M. Sã¼el, Jordi Garcia-Ojalvo, Louisa M. Liberman, Michael B. Elowitz posted to bsubtilis excitability fluctuations noise stochasticity by margaritis on 2007-03-26 12:15:42 as along with 14 people and 1 group yyfwuhan ashishanand megraw dswan rklancer alexg madhadron balabu nickluscombe comb dbikard mhucka paurue jjray EBI-regulation
	Tunability and noise dependence in differentiation dynamics. [My Copy] Science (New York, N.Y.), Vol. 315, No. 5819. (23 March 2007), pp. 1716-1719. by Gurol M. Suel, Rajan P. Kulkarni, Jonathan Dworkin, Jordi Garcia-Ojalvo, Michael B. Elowitz posted to bsubtilis excitability fluctuations noise stochasticity by margaritis on 2007-03-26 11:55:59 as along with 5 people and 2 groups samubernard lauresultan jjray dbikard zwang Centre de Recherches Interdisciplinaires SynBioSys
	Promoter Crosstalk Effects on Gene Expression [My Copy] Journal of Molecular Biology, Vol. 365, No. 4. (26 January 2007), pp. 911-920. by Mathias Hampf, Manfred Gossen posted to fluctuations noise promoter stochasticity by margaritis on 2007-03-08 21:03:13 as along with 1 person jjray
	Transcriptional Pulsing of a Developmental Gene [My Copy] Current Biology, Vol. 16, No. 10. (23 May 2006), pp. 1018-1025. by Jonathan R. Chubb, Tatjana Trcek, Shailesh M. Shenoy, Robert H. Singer posted to bursting fluctuations gene-expression noise promoter stochasticity transcription by margaritis on 2007-03-08 21:00:34 as along with 3 people and 1 group emilyhare qfwills jjray EisenLab
	Regulated cell-to-cell variation in a cell-fate decision system. [My Copy] Nature, Vol. 437, No. 7059. (Sep 2005), pp. 699-706. by Colman A. Lerner, A. Gordon, E. Serra, et al.T. Chin, O. Resnekov, D. Endy, C. G. Pesce, R. Brent posted to fluctuations gene-expression noise stochasticity yeast by margaritis on 2007-03-08 20:47:47 as along with 1 person madhadron
	Cell population heterogeneity during growth of Bacillus subtilis. [My Copy] Genes Dev, Vol. 19, No. 24. (15 December 2005), pp. 3083-3094. by D. B. Kearns, R. Losick posted to bsubtilis fluctuations noise stochasticity by margaritis on 2007-03-08 20:46:12 as along with 2 people madhadron mhucka
	Stochastic gene expression: from single molecules to the proteome [My Copy] Current Opinion in Genetics & Development, Vol. 17, No. 2. (19 April 2007), pp. 107-112. by B. Kaufmann, A. Vanoudenaarden posted to fluctuations gene-expression noise review stochasticity by margaritis on 2007-03-08 20:34:36 as along with 4 people ddcttrl jjray madhadron brianb
	Stochastic mRNA Synthesis in Mammalian Cells [My Copy] PLoS Biology, Vol. 4, No. 10. (1 October 2006), e309. by Arjun Raj, Charles S. Peskin, Daniel Tranchina, Diana Y. Vargas, Sanjay Tyagi posted to bursting fluctuations noise stochasticity by margaritis on 2007-03-06 18:33:02 as along with 7 people jjray nirfriedman madhadron balabu cottrell qfwills johncumbers
	Random timing in signaling cascades [My Copy] Mol Syst Biol, Vol. 3 (13 February 2007) by Juan M. Pedraza, Johan Paulsson posted to fluctuations noise stochasticity views by margaritis on 2007-02-13 16:22:20 as
	Noise in timing and precision of gene activities in a genetic cascade [My Copy] Mol Syst Biol, Vol. 3 (20 December 2007) by Amnon Amir, Oren Kobiler, Assaf Rokney, Amos B. Oppenheim, Joel Stavans posted to l-phage noise stochasticity by margaritis on 2007-02-13 16:20:57 as along with 3 people jjray balabu cjeans
	Filtering transcriptional noise during development: concepts and mechanisms [My Copy] Nature Reviews Genetics, Vol. 7, No. 1., pp. 34-44. by Alfonso M. Arias, Penelope Hayward posted to fluctuations mrna noise review stochasticity by margaritis on 2007-01-15 11:21:41 as along with 2 people and 1 group emilyhare dbikard EisenLab
	Probing Gene Expression in Live Cells, One Protein Molecule at a Time [My Copy] Science, Vol. 311, No. 5767. (17 March 2006), pp. 1600-1603. by Ji Yu, Jie Xiao, Xiaojia Ren, Kaiqin Lao, X. Sunney Xie posted to bursting experiment fluctuations gene-expression noise stochasticity by margaritis on 2007-01-10 14:09:10 as along with 6 people OliverHarriman ddcttrl dayjm balabu jiyu skoch3
	Origins of extrinsic variability in eukaryotic gene expression [My Copy] Nature (21 December 2005) by Dmitri Volfson, Jennifer Marciniak, William J. Blake, Natalie Ostroff, Lev S. Tsimring, Jeff Hasty posted to yeast stochasticity noise gene-expression fluctuations experiment by margaritis on 2007-01-10 13:55:47 as along with 6 people and 1 group guhjy bayesian dpollard balabu timflutre cjeans EisenLab

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noise	78
stochasticity	74
gene-expression	72
fluctuations	70
transcription	49
review	32
theory	29
experiment	28
rnap	27
gene-networks	26
proofreading	21
gene-regulation	20
elongation	20
yeast	14
bistability	14
bsubtilis	13
quorum_sensing	12
dna	10
network-motifs	10
kinetic_proofreading	9
pauses	9
bursting	9
bacteria	9
gene-circuits	8
backtracking	8
regulation	8
pause	7
fidelity	7
single-molecule	6
systems_biology	6
ecoli	6
nucleosomes	5
single-cell	5
development	5
initiation	5
competence	5
chromatin	4
structure	4
robustness	4
news_and_views	4
promoter	4
pol_ii	4
cleavage	4
polymerase	4
vibrio_fischeri	4
oscillations	4
translation	4
pausing	3
complexity	3
synthetic-biology	3
stochastic_simulations	3
evolution	3
post-transcriptional	3
hiv	2
transcritpion	2
networks	2
information-theory	2
commentary	2
rna	2
adaptation	2
mutation	2
cell_fate	2
dna_replication	2
error_rate	2
model	2
organisation	2
desicion_making	2
in-vitro	2
views	2
traffic_model	2
spectra	2
ribosomes	2
fact	2
excitability	2
polysomes	2
tasep	2
cell_singalling	2
reaction_rates	2
autoregulation	2
transcription-factor	2
epigenetics	2
regulatory_network	1
rearrangement	1
adaptability	1
stalling	1
replication	1
gre	1
phenotype	1
active	1
chromosomes	1
t-cell	1
poissonian	1
initation_rate	1
luxr	1
stacking	1
topoisomerase	1
hairpin-stabilised	1
archaea_pol	1
control	1
genome	1
rate_reactions	1
meiosis	1
rnai	1
netwrok	1
promoter-proximal	1
simulations	1
error-correction	1
crowding	1
growth_rate	1
noise-frequency	1
negative_feedback	1
evolvability	1
extrinsic	1
predator-prey	1
first_passage_times	1
lambda_phage	1
enzymes	1
multistability	1
toggle-switch	1
binding	1
vision	1
catalysis_mechanism	1
dna_loop	1
human	1
free_energy	1
flagela	1
biofilm	1
potential	1
experimental	1
mrna	1
mrnap	1
nonequilibrium	1
experiments	1
grea	1
l-phage	1
control_theory	1
dnap	1
resonance	1
population_density	1
fret	1
criticality	1
tfs	1
srna	1
syncronization	1
chormatin	1
in-vivo	1
cell_division	1
termination	1
olfactory_genes	1
tfiis	1
perspective	1
sporulation	1
lac-operon	1
polymrase	1
hierarchical	1
dna-repair	1
eykaryotic	1
active_site	1
low_pass_filter	1
uracil	1
glucose_galactose	1

margaritis's stochasticity [74 articles] Export

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