margaritis's transcription [49 articles] Export Sort

Recent papers added to margaritis's library classified by the tag transcription. You can also see everyone's transcription.

Hide details

	Transcriptional infidelity promotes heritable phenotypic change in a bistable gene network. [My Copy] PLoS biology, Vol. 7, No. 2. (24 February 2009), e44. by Alasdair J. Gordon, Jennifer A. Halliday, Matthew D. Blankschien, Philip A. Burns, Fumio Yatagai, Christophe Herman posted to bistability fidelity stochasticity transcription by margaritis on 2009-03-09 10:37:52 as along with 8 people and 1 group Winzer ocs katiejclowers biomcgary emptyhb jjray bpcusack VGreiff Morgan Lab-KSU
	Transcription on nucleosomal templates by RNA polymerase II in vitro: inhibition of elongation with enhancement of sequence-specific pausing. [My Copy] Genes & development, Vol. 5, No. 4. (April 1991), pp. 683-696. by M. G. Izban, D. S. Luse posted to elongation in-vitro nucleosomes transcription by margaritis on 2009-02-23 15:23:35 as
	Evidence for Eviction and Rapid Deposition of Histones upon Transcriptional Elongation by RNA Polymerase II [My Copy] Mol. Cell. Biol., Vol. 24, No. 23. (1 December 2004), pp. 10111-10117. by Marc A. Schwabish, Kevin Struhl posted to elongation fact nucleosomes transcription by margaritis on 2009-02-23 14:48:27 as
	FACT Facilitates Transcription-Dependent Nucleosome Alteration [My Copy] Science, Vol. 301, No. 5636. (22 August 2003), pp. 1090-1093. by Rimma Belotserkovskaya, Sangtaek Oh, Vladimir A. Bondarenko, George Orphanides, Vasily M. Studitsky, Danny Reinberg posted to elongation fact nucleosomes transcription by margaritis on 2009-02-23 14:27:02 as along with 1 person skoch3
	Factor-stimulated RNA polymerase II transcribes at physiological elongation rates on naked DNA but very poorly on chromatin templates [My Copy] J. Biol. Chem., Vol. 267, No. 19. (5 July 1992), pp. 13647-13655. by M. G. Izban, D. S. Luse posted to chormatin elongation in-vitro nucleosomes transcription by margaritis on 2009-02-23 12:26:20 as
	Absolute mRNA levels and transcriptional initiation rates in Saccharomyces cerevisiae. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 93, No. 11. (28 May 1996), pp. 5208-5212. by V. Iyer, K. Struhl posted to experimental initation_rate initiation transcription by margaritis on 2009-02-23 12:21:43 as
	A single-molecule technique to study sequence-dependent transcription pausing. [My Copy] Biophysical journal, Vol. 87, No. 6. (December 2004), pp. 3945-3953. by A. Shundrovsky, T. J. Santangelo, J. W. Roberts, M. D. Wang posted to elongation pause pauses pausing rnap single-molecule transcription by margaritis on 2009-02-03 18:04:20 as
	Breaking barriers to transcription elongation [My Copy] Nature Reviews Molecular Cell Biology In Nat Rev Mol Cell Biol, Vol. 7, No. 8. (01 August 2006), pp. 557-567. by Abbie Saunders, Leighton J. Core, John T. Lis posted to elongation gene-expression gene-regulation review transcription by margaritis on 2009-01-12 15:21:10 as along with 2 people bartjacobse arthur3131
	TRANSCRIPTION: Gene Expression--Where to Start? [My Copy] Science, Vol. 322, No. 5909. (19 December 2008), pp. 1804-1805. by Stephen Buratowski posted to news_and_views review transcription by margaritis on 2009-01-12 12:19:40 as along with 5 people and 1 group tonamswish fhalbrit abizar inesdesantiago skoch3 Koch_Lab
	Effects of the bacterial transcription-repair coupling factor during transcription of DNA containing non-bulky lesions [My Copy] DNA Repair, Vol. 7, No. 10. (01 October 2008), pp. 1670-1679. by A. Smith, N. Savery posted to elongation pauses rnap transcription by margaritis on 2008-12-05 10:43:19 as
	BASIC MECHANISMS OF TRANSCRIPT ELONGATION AND ITS REGULATION [My Copy] Annual Review of Biochemistry, Vol. 66, No. 1. (1997), pp. 117-172. by S. M. Uptain, C. M. Kane, M. J. Chamberlin posted to polymrase review transcription by margaritis on 2008-11-26 15:45:48 as
	Jamming the ratchet of transcription [My Copy] Nature Structural & Molecular Biology, Vol. 15, No. 8., pp. 777-779. by Vladimir Svetlov, Evgeny Nudler posted to fidelity polymerase review transcription views by margaritis on 2008-11-26 15:31:25 as
	RNA polymerase II subunit Rpb9 is important for transcriptional fidelity in vivo. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 9. (28 February 2006), pp. 3268-3273. by N. K. Nesser, D. O. Peterson, D. K. Hawley posted to fidelity mutation rnap transcription by margaritis on 2008-11-26 15:20:33 as
	RNA Polymerase Pausing Regulates Translation Initiation by Providing Additional Time for TRAP-RNA Interaction [My Copy] Molecular Cell, Vol. 24, No. 4. (17 November 2006), pp. 547-557. by A. Yakhnin, H. Yakhnin, P. Babitzke posted to elongation pausing rnap transcription by margaritis on 2008-11-21 13:41:04 as
	RNA Polymerase Elongation Factors [My Copy] Annual Review of Microbiology, Vol. 62, No. 1. (2008) by Jeffrey W. Roberts, Smita Shankar, Joshua J. Filter posted to elongation regulation review transcription by margaritis on 2008-08-26 16:13:40 as along with 1 person stk
	The transcriptional cycle of HIV-1 in real-time and live cells. [My Copy] J Cell Biol, Vol. 179, No. 2. (22 October 2007), pp. 291-304. by S. Boireau, P. Maiuri, E. Basyuk, et al.M. de la Mata, A. Knezevich, B. Pradet-Balade, V. Bäcker, A. Kornblihtt, A. Marcello, E. Bertrand posted to elongation experiment pauses transcription by margaritis on 2008-07-10 17:01:41 as along with 2 people sebastien_vigneau RedmondSmyth
	Identification In Vivo of Different Rate-Limiting Steps Associated with Transcriptional Activators in the Presence and Absence of a GAGA Element [My Copy] Mol. Cell. Biol., Vol. 25, No. 9. (1 May 2005), pp. 3543-3552. by Yunyuan V. Wang, Hongbing Tang, David S. Gilmour posted to initiation pause promoter-proximal transcription by margaritis on 2008-07-03 12:14:14 as
	Transient Reversal of RNA Polymerase II Active Site Closing Controls Fidelity of Transcription Elongation [My Copy] Molecular Cell, Vol. 30, No. 5. (5 June 2008), pp. 557-566. by Maria L. Kireeva, Yuri A. Nedialkov, Gina H. Cremona, et al.Yuri A. Purtov, Lucyna Lubkowska, Francisco Malagon, Zachary F. Burton, Jeffrey N. Strathern, Mikhail Kashlev posted to fidelity transcription by margaritis on 2008-06-05 17:49:40 as
	Evolvability and hierarchy in rewired bacterial gene networks [My Copy] Nature, Vol. 452, No. 7189. (17 April 2008), pp. 840-845. by Mark Isalan, Caroline Lemerle, Konstantinos Michalodimitrakis, et al.Carsten Horn, Pedro Beltrao, Emanuele Raineri, Mireia Garriga-Canut, Luis Serrano posted to evolvability gene-circuits gene-expression gene-networks regulation transcription by margaritis on 2008-05-09 13:23:46 as along with 26 people and 4 groups Asclepius yyfwuhan biomcgary megraw chica jimineep balabu kaarsinogen aalibes tmmurali dullhunk neils cmzmasek AbnerCYH josedavid biehl caseybrown Garamonfok austin hryk dbikard cactus chad_davis michaelbarton aheilbut zwang GEB Centre de Recherches Interdisciplinaires SynBioSys BergmanLab
	Poised Polymerases: On Your Mark...Get Set...Go! [My Copy] Molecular Cell, Vol. 30, No. 1. (11 April 2008), pp. 7-10. by David H. Price posted to elongation regulation review transcription by margaritis on 2008-04-16 15:33:22 as along with 1 person and 1 group skoch3 Koch_Lab
	Applied force reveals mechanistic and energetic details of transcription termination. [My Copy] Cell, Vol. 132, No. 6. (21 March 2008), pp. 971-982. by M. H. Larson, W. J. Greenleaf, R. Landick, S. M. Block posted to single-molecule termination transcription by margaritis on 2008-04-14 13:47:45 as along with 1 person and 1 group samjlord moernerlab
	Transcriptional control of noise in gene expression [My Copy] Proceedings of the National Academy of Sciences (19 March 2008), 0707904105. by Alvaro Sanchez, Jane Kondev posted to noise regulation stochasticity theory transcription by margaritis on 2008-04-07 10:58:23 as along with 7 people jjray balabu lambda ddcttrl austin sbottani inesdesantiago
	Transcription regulation through promoter-proximal pausing of RNA polymerase II. [My Copy] Science (New York, N.Y.), Vol. 319, No. 5871. (28 March 2008), pp. 1791-1792. by L. J. Core, J. T. Lis posted to pause pauses regulation transcription by margaritis on 2008-03-28 12:37:15 as along with 5 people and 1 group ychromosome bpcusack inesdesantiago skoch3 biomcgary Koch_Lab
	A Chromatin Landmark and Transcription Initiation at Most Promoters in Human Cells [My Copy] Cell, Vol. 130, No. 1. (13 July 2007), pp. 77-88. by M. Guenther, S. Levine, L. Boyer, R. Jaenisch, R. Young posted to elongation initiation regulation transcription by margaritis on 2008-03-19 18:20:03 as along with 6 people rsaito hkuhn RyuOgawa clearbluespring gderwin inesdesantiago
	The nuclear envelope and transcriptional control [My Copy] Nat Rev Genet, Vol. 8, No. 7. (05 July 2007), pp. 507-517. by Asifa Akhtar, Susan M. Gasser posted to control dna regulation transcription by margaritis on 2008-03-18 11:35:26 as along with 2 people and 2 groups dchughes ajgentles G4ID Genetics-of-Gambling
	RNA polymerase is poised for activation across the genome. [My Copy] Nature genetics, Vol. 39, No. 12. (11 December 2007), pp. 1507-1511. by Ginger W. Muse, Daniel A. Gilchrist, Sergei Nechaev, et al.Ruchir Shah, Joel S. Parker, Sherry F. Grissom, Julia Zeitlinger, Karen Adelman posted to elongation pauses regulation rnap transcription by margaritis on 2008-03-03 12:30:01 as along with 5 people and 1 group inesdesantiago rschulz skoch3 caseybrown mikaelhuss Koch_Lab
	Concurrent Fast and Slow Cycling of a Transcriptional Activator at an Endogenous Promoter [My Copy] Science, Vol. 319, No. 5862. (25 January 2008), pp. 466-469. by Tatiana S. Karpova, Min J. Kim, Corentin Spriet, et al.Kip Nalley, Timothy J. Stasevich, Zoulika Kherrouche, Laurent Heliot, James G. Mcnally posted to binding dna promoter transcription transcription-factor by margaritis on 2008-01-30 10:55:28 as along with 4 people tibbitts djkt cjeans caseybrown
	Analysis of Promoter Targets for Escherichia coli Transcription Elongation Factor GreA In Vivo and In Vitro [My Copy] J. Bacteriol., Vol. 189, No. 24. (15 December 2007), pp. 8772-8785. by Ekaterina Stepanova, Jookyung Lee, Maria Ozerova, et al.Ekaterina Semenova, Kirill Datsenko, Barry L. Wanner, Konstantin Severinov, Sergei Borukhov posted to backtracking grea pauses transcription by margaritis on 2008-01-25 18:40:14 as along with 1 person operon
	Fluctuations, pauses and backtracking in DNA transcription [My Copy] Biophys. J. (24 August 2007), biophysj.107.105767. by Margaritis Voliotis, Netta Cohen, Carmen Molina-Paris, Tanniemola Liverpool posted to backtracking fluctuations noise stochasticity transcription by margaritis on 2008-01-09 11:22:22 as
	Single-molecule tracking of mRNA exiting from RNA polymerase II [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 1. (8 January 2008), pp. 135-140. by Joanna Andrecka, Robert Lewis, Florian Brückner, Elisabeth Lehmann, Patrick Cramer, Jens Michaelis posted to mrnap polymerase rnap transcription by margaritis on 2008-01-09 11:21:50 as along with 1 person yusdi
	Merging the RNA and DNA worlds [My Copy] Nat Struct Mol Biol, Vol. 14, No. 12. (December 2007), pp. 1122-1123. by Irina Artsimovitch, Dmitry G. Vassylyev posted to pol_ii rnap transcription by margaritis on 2007-12-05 18:08:10 as
	Mechanism of transcriptional stalling at cisplatin-damaged DNA [My Copy] Nat Struct Mol Biol, Vol. 14, No. 12. (December 2007), pp. 1127-1133. by Gerke E. Damsma, Aaron Alt, Florian Brueckner, Thomas Carell, Patrick Cramer posted to pause rnap stalling transcription by margaritis on 2007-12-05 17:50:07 as
	Bacterial RNA polymerases: the wholo story. [My Copy] Curr Opin Struct Biol, Vol. 13, No. 1. (February 2003), pp. 31-39. by K. S. Murakami, S. A. Darst posted to rnap transcription by margaritis on 2007-12-04 18:15:47 as along with 1 person cassj
	The Active Site of RNA Polymerase II Participates in Transcript Cleavage Within Arrested Ternary Complexes [My Copy] Proceedings of the National Academy of Sciences, Vol. 91, No. 17. (16 August 1994), pp. 8057-8061. by Md Rudd, Mg Izban, Ds Luse posted to cleavage pol_ii transcription by margaritis on 2007-10-09 18:17:29 as
	RNA polymerase marching backward. [My Copy] Science, Vol. 259, No. 5097. (12 February 1993), pp. 944-945. by G. A. Kassavetis, E. P. Geiduschek posted to backtracking proofreading transcription by margaritis on 2007-10-09 18:04:06 as
	Fidelity of RNA polymerase II transcription controlled by elongation factor TFIIS [My Copy] Proceedings of the National Academy of Sciences, Vol. 93, No. 24. (26 November 1996), pp. 13677-13682. by Choonju Jeon, Kan Agarwal posted to cleavage pol_ii proofreading tfiis transcription by margaritis on 2007-10-09 17:04:57 as
	Spontaneous Cleavage of RNA in Ternary Complexes of Escherichia coli RNA Polymerase and Its Significance for the Mechanism of Transcription [My Copy] Proceedings of the National Academy of Sciences, Vol. 88, No. 18. (15 September 1991), pp. 7983-7987. by Ck Surratt, Sc Milan, Mj Chamberlin posted to cleavage ecoli proofreading rnap transcription by margaritis on 2007-10-09 16:19:18 as
	An RNA polymerase mutant with reduced accuracy of chain elongation. [My Copy] Biochemistry, Vol. 25, No. 20. (7 October 1986), pp. 5920-5928. by A. Blank, J. A. Gallant, R. R. Burgess, L. A. Loeb posted to error_rate experiment kinetic_proofreading proofreading transcription by margaritis on 2007-10-09 14:46:52 as
	Transcriptional proofreading in Escherichia coli. [My Copy] EMBO J, Vol. 8, No. 10. (October 1989), pp. 3153-3158. by R. T. Libby, J. L. Nelson, J. M. Calvo, J. A. Gallant posted to kinetic_proofreading proofreading transcription by margaritis on 2007-10-09 14:23:48 as
	RNA polymerase II transcription in living color [My Copy] Nature Structural & Molecular Biology, Vol. 14, No. 9., pp. 788-790. by Angus I. Lamond, Jason R. Swedlow posted to news_and_views pause rnap transcription by margaritis on 2007-09-07 11:23:09 as
	In vivo dynamics of RNA polymerase II transcription [My Copy] Nat Struct Mol Biol, Vol. 14, No. 9. (5 September 2007), pp. 796-806. by Xavier Darzacq, Yaron Shav-Tal, Valeria de Turris, et al.Yehuda Brody, Shailesh M. Shenoy, Robert D. Phair, Robert H. Singer posted to experiment in-vivo pause rnap transcription by margaritis on 2007-09-07 11:21:53 as along with 5 people and 3 groups jjray dpollard dchughes madhadron cwbrown EisenLab G4ID Genetics-of-Gambling
	A Chromatin Landmark and Transcription Initiation at Most Promoters in Human Cells [My Copy] Cell, Vol. 130, No. 1. (13 July 2007), pp. 77-88. by Matthew G. Guenther, Stuart S. Levine, Laurie A. Boyer, Rudolf Jaenisch, Richard A. Young posted to chromatin elongation initiation transcription by margaritis on 2007-07-26 19:11:09 as along with 1 person cabbagezs
	Rapid spontaneous accessibility of nucleosomal DNA [My Copy] Nature Structural & Molecular Biology, Vol. 12, No. 1. (05 December 2004), pp. 46-53. by Gu Li, Marcia Levitus, Carlos Bustamante, Jonathan Widom posted to dna nucleosomes transcription by margaritis on 2007-07-19 15:01:41 as along with 2 people quanwang afenley
	Structural basis for substrate loading in bacterial RNA polymerase [My Copy] Nature (20 June 2007) by Dmitry G. Vassylyev, Marina N. Vassylyeva, Jinwei Zhang, Murali Palangat, Irina Artsimovitch, Robert Landick posted to elongation rnap structure transcription by margaritis on 2007-07-18 11:30:09 as along with 2 people zwang Jporci
	Structural basis for transcription elongation by bacterial RNA polymerase [My Copy] Nature (20 June 2007) by Dmitry G. Vassylyev, Marina N. Vassylyeva, Anna Perederina, Tahir H. Tahirov, Irina Artsimovitch posted to elongation rnap structure transcription by margaritis on 2007-07-18 11:29:56 as along with 2 people zwang Jporci
	REPLICATION AND TRANSCRIPTION: SHAPING THE LANDSCAPE OF THE GENOME [My Copy] Nat Rev Genet, Vol. 6, No. 9. (2005), pp. 669-677. by Lyubomira Chakalova, Emmanuel Debrand, Jennifer A. Mitchell, Cameron S. Osborne, Peter Fraser posted to review transcription by margaritis on 2007-06-11 15:07:22 as along with 6 people and 3 groups daveGerrard polivares bala xico gloria xingxu BergmanLab WetBiology DictyosteliumGroup
	Eukaryotic Transcription: What Does It Mean for a Gene to Be 'on'? [My Copy] Current Biology, Vol. 16, No. 10. (23 May 2006), pp. R371-R373. by Ido Golding, Edward C. Cox posted to bursting fluctuations noise stochasticity transcription by margaritis on 2007-05-06 17:42:32 as along with 1 person and 1 group cmm FAB-lab
	Transcriptional Pulsing of a Developmental Gene [My Copy] Current Biology, Vol. 16, No. 10. (23 May 2006), pp. 1018-1025. by Jonathan R. Chubb, Tatjana Trcek, Shailesh M. Shenoy, Robert H. Singer posted to bursting fluctuations gene-expression noise promoter stochasticity transcription by margaritis on 2007-03-08 21:00:34 as along with 3 people and 1 group emilyhare qfwills jjray EisenLab
	Transcriptional noise and the fidelity of initiation by RNA polymerase II [My Copy] Nature Structural & Molecular Biology, Vol. 14, No. 2., pp. 103-105. by Kevin Struhl posted to commentary transcription yeast by margaritis on 2007-03-02 16:52:17 as along with 4 people and 2 groups xingxu dchughes uz_labu_laimi siebert G4ID Genetics-of-Gambling

Note: You may cite this page as: http://www.citeulike.org/user/margaritis/tag/transcription

Sort by:
Order:	Default Ascending Descending
Empty fields:	Default First Last

noise	78
stochasticity	74
gene-expression	72
fluctuations	70
transcription	49
review	32
theory	29
experiment	28
rnap	27
gene-networks	26
proofreading	21
gene-regulation	20
elongation	20
yeast	14
bistability	14
bsubtilis	13
quorum_sensing	12
dna	10
network-motifs	10
kinetic_proofreading	9
pauses	9
bursting	9
bacteria	9
gene-circuits	8
backtracking	8
regulation	8
pause	7
fidelity	7
single-molecule	6
systems_biology	6
ecoli	6
nucleosomes	5
single-cell	5
development	5
initiation	5
competence	5
chromatin	4
structure	4
robustness	4
news_and_views	4
promoter	4
pol_ii	4
cleavage	4
polymerase	4
vibrio_fischeri	4
oscillations	4
translation	4
pausing	3
complexity	3
synthetic-biology	3
stochastic_simulations	3
evolution	3
post-transcriptional	3
hiv	2
transcritpion	2
networks	2
information-theory	2
commentary	2
rna	2
adaptation	2
mutation	2
cell_fate	2
dna_replication	2
error_rate	2
model	2
organisation	2
desicion_making	2
in-vitro	2
views	2
traffic_model	2
spectra	2
ribosomes	2
fact	2
excitability	2
polysomes	2
tasep	2
cell_singalling	2
reaction_rates	2
autoregulation	2
transcription-factor	2
epigenetics	2
regulatory_network	1
rearrangement	1
adaptability	1
stalling	1
replication	1
gre	1
phenotype	1
active	1
chromosomes	1
t-cell	1
poissonian	1
initation_rate	1
luxr	1
stacking	1
topoisomerase	1
hairpin-stabilised	1
archaea_pol	1
control	1
genome	1
rate_reactions	1
meiosis	1
rnai	1
netwrok	1
promoter-proximal	1
simulations	1
error-correction	1
crowding	1
growth_rate	1
noise-frequency	1
negative_feedback	1
evolvability	1
extrinsic	1
predator-prey	1
first_passage_times	1
lambda_phage	1
enzymes	1
multistability	1
toggle-switch	1
binding	1
vision	1
catalysis_mechanism	1
dna_loop	1
human	1
free_energy	1
flagela	1
biofilm	1
potential	1
experimental	1
mrna	1
mrnap	1
nonequilibrium	1
experiments	1
grea	1
l-phage	1
control_theory	1
dnap	1
resonance	1
population_density	1
fret	1
criticality	1
tfs	1
srna	1
syncronization	1
chormatin	1
in-vivo	1
cell_division	1
termination	1
olfactory_genes	1
tfiis	1
perspective	1
sporulation	1
lac-operon	1
polymrase	1
hierarchical	1
dna-repair	1
eykaryotic	1
active_site	1
low_pass_filter	1
uracil	1
glucose_galactose	1

margaritis's transcription [49 articles] Export Sort

margaritis's tags