maria_hauser's library 57 articles Export

	ProtoNet: hierarchical classification of the protein space. [My Copy] Nucleic acids research, Vol. 31, No. 1. (1 January 2003), pp. 348-352. by Ori Sasson, Avishay Vaaknin, Hillel Fleischer, et al.Elon Portugaly, Yonatan Bilu, Nathan Linial, Michal Linial posted to stipendium by maria_hauser on 2009-10-31 11:08:46 as
	Dynamic programming alignment accuracy. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 5, No. 3. (1998), pp. 493-504. by I. Holmes, R. Durbin posted to stipendium by maria_hauser on 2009-10-31 10:31:14 as along with 1 person gjuggler
	I-TASSER: Fully automated protein structure prediction in CASP8 [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 77, No. S9. (21 August 2009), pp. 100-113. by Yang Zhang posted to stipendium by maria_hauser on 2009-10-30 22:04:33 as along with 3 people and 1 group AliC j3xucite reyez Orengo Group Journal Picks
	Fast and accurate automatic structure prediction with HHpred [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 77, No. S9. (0 2009), pp. 128-132. by Andrea Hildebrand, Michael Remmert, Andreas Biegert, Johannes Söding posted to stipendium by maria_hauser on 2009-10-30 22:01:44 as along with 2 people and 1 group AliC reyez Orengo Group Journal Picks
	EVEREST: automatic identification and classification of protein domains in all protein sequences. [My Copy] BMC bioinformatics, Vol. 7 (02 June 2006), 277. by Elon Portugaly, Amir Harel, Nathan Linial, Michal Linial posted to stipendium by maria_hauser on 2009-10-30 21:57:12 as along with 1 person druvus
	The InterPro database, an integrated documentation resource for protein families, domains and functional sites. [My Copy] Nucleic acids research, Vol. 29, No. 1. (1 January 2001), pp. 37-40. by R. Apweiler, T. K. Attwood, A. Bairoch, et al.A. Bateman, E. Birney, M. Biswas, P. Bucher, L. Cerutti, F. Corpet, M. D. Croning, R. Durbin, L. Falquet, W. Fleischmann, J. Gouzy, H. Hermjakob, N. Hulo, I. Jonassen, D. Kahn, A. Kanapin, Y. Karavidopoulou, R. Lopez, B. Marx, N. J. Mulder, T. M. Oinn, M. Pagni, F. Servant, C. J. Sigrist, E. M. Zdobnov posted to stipendium by maria_hauser on 2009-10-30 21:56:02 as along with 2 people alanrw sgoetz
	ProDom: automated clustering of homologous domains. [My Copy] Briefings in bioinformatics, Vol. 3, No. 3. (September 2002), pp. 246-251. by Florence Servant, Catherine Bru, Sébastien Carrère, et al.Emmanuel Courcelle, Jérĵme Gouzy, David Peyruc, Daniel Kahn posted to stipendium by maria_hauser on 2009-10-30 21:54:40 as along with 3 people Cortel cjeans gulkur
	Recent improvements to the SMART domain-based sequence annotation resource. [My Copy] Nucleic acids research, Vol. 30, No. 1. (1 January 2002), pp. 242-244. by Ivica Letunic, Leo Goodstadt, Nicholas J. Dickens, et al.Tobias Doerks, Joerg Schultz, Richard Mott, Francesca Ciccarelli, Richard R. Copley, Chris P. Ponting, Peer Bork posted to stipendium by maria_hauser on 2009-10-30 21:52:36 as
	The CATH protein family database: a resource for structural and functional annotation of genomes. [My Copy] Proteomics, Vol. 2, No. 1. (January 2002), pp. 11-21. by Christine A. Orengo, James E. Bray, Daniel W. Buchan, et al.Andrew Harrison, David Lee, Frances M. Pearl, Ian Sillitoe, Annabel E. Todd, Janet M. Thornton posted to stipendium by maria_hauser on 2009-10-30 21:50:36 as along with 2 people and 1 group sillitoe chad_davis Orengo Group Journal Picks
	Target space for structural genomics revisited. [My Copy] Bioinformatics (Oxford, England), Vol. 18, No. 7. (July 2002), pp. 922-933. by Jinfeng Liu, Burkhard Rost posted to stipendium by maria_hauser on 2009-10-30 21:43:17 as
	ADDA: a domain database with global coverage of the protein universe. [My Copy] Nucleic acids research, Vol. 33, No. Database issue. (1 January 2005), D188. by Andreas Heger, Christopher Andrew A. Wilton, Ashwin Sivakumar, Liisa Holm posted to stipendium by maria_hauser on 2009-10-30 17:01:19 as
	Exhaustive enumeration of protein domain families. [My Copy] Journal of molecular biology, Vol. 328, No. 3. (2 May 2003), pp. 749-767. by Andreas Heger, Liisa Holm posted to stipendium by maria_hauser on 2009-10-30 17:00:48 as
	Assessment of domain boundary predictions and the prediction of intramolecular contacts in CASP8 [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 77, No. S9. (24 July 2009), pp. 196-209. by Iakes Ezkurdia, Osvaldo Graña, José M. G. Izarzugaza, Michael L. Tress posted to stipendium by maria_hauser on 2009-10-28 15:39:38 as along with 1 person and 1 group AliC Orengo Group Journal Picks
	Domains, motifs and clusters in the protein universe. [My Copy] Current opinion in chemical biology, Vol. 7, No. 1. (February 2003), pp. 5-11. by Jinfeng Liu, Burkhard Rost posted to stipendium by maria_hauser on 2009-10-28 15:15:47 as
	Comprehensive genome analysis of 203 genomes provides structural genomics with new insights into protein family space. [My Copy] Nucleic acids research, Vol. 34, No. 3. (2006), pp. 1066-1080. by Russell L. Marsden, David Lee, Michael Maibaum, Corin Yeats, Christine A. Orengo posted to no-tag by maria_hauser on 2009-09-14 09:08:37 as along with 3 people and 2 groups operon marcius eweaver BioinfoCIPF SGU-CIPF
	Amino acid substitution matrices from protein blocks. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 89, No. 22. (15 November 1992), pp. 10915-10919. by S. Henikoff, J. G. Henikoff posted to no-tag by maria_hauser on 2009-09-11 08:03:15 as along with 14 people rshe rpetrenko BioNica cmura alefox j3xucite sebk cen4ik kaarsinogen dgront gurkanbebek Iden-J_GluR cjeans ashwinma
	The PROSITE database. [My Copy] Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006) by Nicolas Hulo, Amos Bairoch, Virginie Bulliard, et al.Lorenzo Cerutti, Edouard De Castro, Petra S. Langendijk-Genevaux, Marco Pagni, Christian J. Sigrist posted to no-tag by maria_hauser on 2009-09-10 16:43:53 as along with 6 people and 1 group yas happy_manatee sriram_s neils massivemayhem siebertm T_lab
	The Pfam protein families database [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_1. (1 January 2004), pp. D138-141. by Alex Bateman, Lachlan Coin, Richard Durbin, et al.Robert D. Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L. L. Sonnhammer, David J. Studholme, Corin Yeats, Sean R. Eddy posted to stipendium by maria_hauser on 2009-09-10 16:43:10 as along with 10 people jwm rohithadassanayake flbarroso cerca LeightonP ziquje chad_davis cjeans wenhan gulkur
	TM-align: a protein structure alignment algorithm based on the TM-score. [My Copy] Nucleic acids research, Vol. 33, No. 7. (22 April 2005), pp. 2302-2309. by Yang Zhang, Jeffrey Skolnick posted to no-tag by maria_hauser on 2009-09-10 16:23:40 as along with 7 people operon newton1234 joseolucha mijam reyez pjcite granujilla
	Consensus sequences improve PSI-BLAST through mimicking profile-profile alignments. [My Copy] Nucleic acids research, Vol. 35, No. 7. (1 April 2007), pp. 2238-2246. by Dariusz Przybylski, Burkhard Rost posted to stipendium by maria_hauser on 2009-09-10 15:51:34 as along with 1 person yylin
	SCOP: a Structural Classification of Proteins database. [My Copy] Nucleic acids research, Vol. 27, No. 1. (1 January 1999), pp. 254-256. by T. J. Hubbard, B. Ailey, S. E. Brenner, A. G. Murzin, C. Chothia posted to stipendium by maria_hauser on 2009-09-10 15:24:29 as along with 3 people timhubbard bicko cjeans
	Exhaustive matching of the entire protein sequence database. [My Copy] Science (New York, N.Y.), Vol. 256, No. 5062. (5 June 1992), pp. 1443-1445. by G. H. Gonnet, M. A. Cohen, S. A. Benner posted to no-tag by maria_hauser on 2009-09-10 15:23:11 as
	Identification of common molecular subsequences. [My Copy] Journal of molecular biology, Vol. 147, No. 1. (25 March 1981), pp. 195-197. by T. F. Smith, M. S. Waterman posted to stipendium by maria_hauser on 2009-09-10 15:01:20 as along with 21 people rshe jengeldk jmanning2k cmor parnell adamnellis timflutre heliopais mcbla alessandroparini usagi-kirin creswick vavi bicko dgront rabio cjeans incovoma sujaikumar newton1234 bozdagd
	Kalign2: high-performance multiple alignment of protein and nucleotide sequences allowing external features. [My Copy] Nucleic acids research, Vol. 37, No. 3. (22 February 2009), pp. 858-865. by Timo Lassmann, Oliver Frings, Erik L. Sonnhammer posted to no-tag by maria_hauser on 2009-09-10 10:29:39 as along with 4 people BioNica robfsouza guhjy nuin
	Kalign--an accurate and fast multiple sequence alignment algorithm. [My Copy] BMC bioinformatics, Vol. 6 (2005) by Timo Lassmann, Erik L. Sonnhammer posted to no-tag by maria_hauser on 2009-09-10 10:29:26 as along with 7 people Thaverkamp BioNica johanviklund aalibes CharlesM knaseanka Haggan
	A model of evolutionary change in proteins [My Copy] Atlas of protein sequence and structure, Vol. 5, No. suppl 3. (1978), pp. 345-351. by M. O. Dayhoff, R. M. Schwartz, B. C. Orcutt posted to no-tag by maria_hauser on 2009-09-09 23:15:43 as along with 1 person mcbla
	The Protein Data Bank [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 235-242. by Helen M. Berman, John Westbrook, Zukang Feng, et al.Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne posted to stipendium by maria_hauser on 2009-09-09 23:11:16 as along with 45 people and 5 groups trishul krapnik barmak7282 viktor21614 badi ucbcjbm TLVincent Martin8223 tomjad Diego_Prada flbarroso Taguan oceanwind dsmueller fisherp semin MarcoAlvarez kumar_physics LamBras RamuAnandakrishnan nlapalu reyez nigham lillekatt thaliana dimka kuhn jwm vavi bicko itmeson dgront caporaso condon aengisch debatebob massivemayhem gisle girschick selrac tji higueruelo boris_aguilar sebk timg References for 3DSim paper Radiation_Damage Stressosome biomedical-nlp beta
	Removing near-neighbour redundancy from large protein sequence collections. [My Copy] Bioinformatics (Oxford, England), Vol. 14, No. 5. (June 1998), pp. 423-429. by L. Holm, C. Sander posted to no-tag by maria_hauser on 2009-09-09 23:09:07 as along with 2 people kaarsinogen sim82
	Alignment of whole genomes. [My Copy] Nucleic acids research, Vol. 27, No. 11. (1 June 1999), pp. 2369-2376. by A. L. Delcher, S. Kasif, R. D. Fleischmann, J. Peterson, O. White, S. L. Salzberg posted to no-tag by maria_hauser on 2009-09-09 22:02:50 as along with 5 people and 1 group pachorip dragonrez yoanjacquemin bozdagd wenhan MBLAB
	BLAT--the BLAST-like alignment tool. [My Copy] Genome research, Vol. 12, No. 4. (1 April 2002), pp. 656-664. by W. James Kent posted to no-tag by maria_hauser on 2009-09-09 21:38:09 as along with 37 people and 3 groups azazello rshe dchughes rdowell gwallau druvus aprasad n00c sficklin Thaverkamp cpwardell daveGerrard coela daforerog pwais umit mmartin paszkows operon miguel pcahan1 Ayest indigoviolet mtagaya treangen michC djkt timflutre olympos cjeans wenhan natstreet antonkratz yoanjacquemin talponer bozdagd gpappas LabDros BergmanLab EisenLab
	tPatternHunter: gapped, fast and sensitive translated homology search. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 4. (15 February 2005), pp. 542-544. by Derek Kisman, Ming Li, Bin Ma, Li Wang posted to no-tag by maria_hauser on 2009-09-09 21:10:23 as along with 1 person nedwards
	Rapid Homology Search with Neighbor Seeds [My Copy] Algorithmica, Vol. 48, No. 2. (June 2007), pp. 187-202. by Miklos Csuros, Bin Ma posted to no-tag by maria_hauser on 2009-09-09 20:09:30 as
	A greedy algorithm for aligning DNA sequences. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 7, No. 1-2. (r 2000), pp. 203-214. by Z. Zhang, S. Schwartz, L. Wagner, W. Miller posted to no-tag by maria_hauser on 2009-09-09 17:18:46 as along with 5 people AaronDarling azazello sujaikumar benwei bozdagd
	Fast computation of neighbor seeds. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 6. (15 March 2009), pp. 822-823. by Lucian Ilie, Silvana Ilie posted to no-tag by maria_hauser on 2009-09-09 17:11:37 as
	Tolerating some redundancy significantly speeds up clustering of large protein databases. [My Copy] Bioinformatics (Oxford, England), Vol. 18, No. 1. (January 2002), pp. 77-82. by Weizhong Li, Lukasz Jaroszewski, Adam Godzik posted to no-tag by maria_hauser on 2009-09-08 08:35:56 as along with 1 person Cortel
	Clustering of highly homologous sequences to reduce the size of large protein databases. [My Copy] Bioinformatics (Oxford, England), Vol. 17, No. 3. (1 March 2001), pp. 282-283. by W. Li, L. Jaroszewski, A. Godzik posted to no-tag by maria_hauser on 2009-09-08 08:35:00 as along with 4 people and 1 group TLVincent yylin Cortel caporaso biomedical-nlp
	Database indexing for production MegaBLAST searches. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008), pp. 1757-1764. by Aleksandr Morgulis, George Coulouris, Yan Raytselis, Thomas L. Madden, Richa Agarwala, Alejandro A. Schäffer posted to no-tag by maria_hauser on 2009-09-08 08:29:28 as along with 5 people natstreet druvus jdelcampo Neeperando APRegier
	PatternHunter: faster and more sensitive homology search [My Copy] Bioinformatics, Vol. 18, No. 3. (1 March 2002), pp. 440-445. by Bin Ma, John Tromp, Ming Li posted to no-tag by maria_hauser on 2009-09-08 08:26:40 as along with 10 people druvus mmartin umit nuke2005 catmat treangen natstreet nedwards DickSilver bozdagd
	PatternHunter II: highly sensitive and fast homology search. [My Copy] Genome informatics. International Conference on Genome Informatics, Vol. 14 (2003), pp. 164-175. by Ming Li, Bin Ma, Derek Kisman, John Tromp posted to no-tag by maria_hauser on 2009-09-08 08:26:11 as along with 3 people azazello nuke2005 treangen
	Improved tools for biological sequence comparison. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 85, No. 8. (April 1988), pp. 2444-2448. by W. R. Pearson, D. J. Lipman posted to no-tag by maria_hauser on 2009-09-07 15:31:03 as along with 15 people and 2 groups rshe pachorip parnell carlosviana cawelsh9 arcticrasta ffranca gurkanbebek bsmagic CitoJam lusk cjeans sujaikumar Ema bozdagd Bioinformatics bioinplant
	Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features [My Copy] Biopolymers, Vol. 22, No. 12. (December 1983), pp. 2577-2637. by Wolfgang Kabsch, Christian Sander posted to no-tag by maria_hauser on 2009-09-06 11:29:24 as along with 33 people dfdong barmak7282 Vadikus j3xucite scampos TLVincent pablocarb rpetrenko carlosjavierna mijam wqia007 dsmueller niallhaslam saunders jwm sebk Diego_Prada pjcite kaarsinogen lna chad_davis wouterboomsma penka ffranca dgront choonpeng rabio gisle medic0747 martainn chgjb mschofie marti
	Hidden Markov models in computational biology. Applications to protein modeling. [My Copy] Journal of molecular biology, Vol. 235, No. 5. (4 February 1994), pp. 1501-1531. by A. Krogh, M. Brown, I. S. Mian, K. Sjölander, D. Haussler posted to no-tag by maria_hauser on 2009-09-06 10:30:09 as along with 4 people ldiambra rabio cjeans wenhan
	Protein homology detection by HMM-HMM comparison. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 7. (1 April 2005), pp. 951-960. by Johannes Söding posted to stipendium by maria_hauser on 2009-09-06 09:52:31 as along with 3 people grottenolm tjimenez j3xucite
	Using substitution probabilities to improve position-specific scoring matrices. [My Copy] Computer applications in the biosciences : CABIOS, Vol. 12, No. 2. (April 1996), pp. 135-143. by J. G. Henikoff, S. Henikoff posted to no-tag by maria_hauser on 2009-09-03 20:16:21 as along with 1 person ca3295
	Profile-profile methods provide improved fold-recognition: a study of different profile-profile alignment methods. [My Copy] Proteins, Vol. 57, No. 1. (1 October 2004), pp. 188-197. by Tomas Ohlson, Björn Wallner, Arne Elofsson posted to stipendium by maria_hauser on 2009-09-03 18:30:47 as along with 3 people dgront rabio granujilla
	The ASTRAL compendium for protein structure and sequence analysis. [My Copy] Nucleic acids research, Vol. 28, No. 1. (1 January 2000), pp. 254-256. by S. E. Brenner, P. Koehl, M. Levitt posted to no-tag by maria_hauser on 2009-09-03 17:20:44 as along with 4 people rabio cjeans siebertm gulkur
	SCOP: a structural classification of proteins database. [My Copy] Nucleic acids research, Vol. 28, No. 1. (1 January 2000), pp. 257-259. by L. Lo Conte, B. Ailey, T. J. Hubbard, S. E. Brenner, A. G. Murzin, C. Chothia posted to no-tag by maria_hauser on 2009-09-03 15:53:49 as along with 4 people timhubbard tjimenez dimka cjeans
	Random sequences. [My Copy] Journal of molecular biology, Vol. 163, No. 2. (15 January 1983), pp. 171-176. by W. M. Fitch posted to no-tag by maria_hauser on 2009-08-15 19:08:10 as along with 1 person cjeans
	Local alignment statistics. [My Copy] Methods in enzymology, Vol. 266 (1996), pp. 460-480. by S. F. Altschul, W. Gish posted to no-tag by maria_hauser on 2009-08-15 18:14:59 as along with 1 person siebertm
	Prediction of protein functional residues from sequence by probability density estimation. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 5. (1 March 2008), pp. 613-620. by J. D. Fischer, C. E. Mayer, J. Söding posted to tau pseudocounts by maria_hauser on 2009-08-13 19:40:05 as along with 1 person grottenolm

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