martainn's library 662 articles Export

	A method to describe enzyme-catalyzed reactions by combining steady state and time course enzyme kinetic parameters. [My Copy] Biochimica et biophysica acta (17 October 2009) by Ryan Walsh, Earl Martin, Sultan Darvesh posted to methods kinetics by martainn on 2009-11-20 13:05:55 as
	Supercooled liquid-like solvent in trypsin crystals: implications for crystal annealing and temperature-controlled X-ray radiation damage studies. [My Copy] Journal of synchrotron radiation, Vol. 12, No. Pt 3. (May 2005), pp. 310-317. by M. Weik, A. M. Schreurs, H. K. Leiros, G. Zaccai, R. B. Ravelli, P. Gros posted to structure methods crystallization cryo by martainn on 2009-11-16 17:57:21 as
	Electron transfer between cytochrome c and p66Shc generates reactive oxygen species that trigger mitochondrial apoptosis. [My Copy] Cell, Vol. 122, No. 2. (29 July 2005), pp. 221-233. by Marco Giorgio, Enrica Migliaccio, Francesca Orsini, et al.Demis Paolucci, Maurizio Moroni, Cristina Contursi, Giovanni Pelliccia, Lucilla Luzi, Saverio Minucci, Massimo Marcaccio, Paolo Pinton, Rosario Rizzuto, Paolo Bernardi, Francesco Paolucci, Pier Giuseppe G. Pelicci posted to ros pro-isomerization mitochondrial apoptosis by martainn on 2009-11-16 12:53:10 as
	Protein kinase C beta and prolyl isomerase 1 regulate mitochondrial effects of the life-span determinant p66Shc. [My Copy] Science (New York, N.Y.), Vol. 315, No. 5812. (2 February 2007), pp. 659-663. by Paolo Pinton, Alessandro Rimessi, Saverio Marchi, et al.Francesca Orsini, Enrica Migliaccio, Marco Giorgio, Cristina Contursi, Saverio Minucci, Fiamma Mantovani, Mariusz R. Wieckowski, Giannino Del Sal, Pier Giuseppe G. Pelicci, Rosario Rizzuto posted to pro-isomerization mitochondria import by martainn on 2009-11-16 12:48:27 as along with 1 person guhjy
	The prolyl isomerase PIN1: a pivotal new twist in phosphorylation signalling and disease. [My Copy] Nature reviews. Molecular cell biology, Vol. 8, No. 11. (November 2007), pp. 904-916. by Kun Ping P. Lu, Xiao Zhen Z. Zhou posted to structure pro-isomerization inhibitor by martainn on 2009-11-16 12:44:54 as
	A remote prolyl isomerization controls domain assembly via a hydrogen bonding network. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 30. (28 July 2009), pp. 12335-12340. by Ulrich Weininger, Roman P. Jakob, Barbara Eckert, Kristian Schweimer, Franz X. Schmid, Jochen Balbach posted to structure pro-isomerization phage assembly by martainn on 2009-11-16 12:13:24 as
	Filamentous phage infection: crystal structure of g3p in complex with its coreceptor, the C-terminal domain of TolA. [My Copy] Structure (London, England : 1993), Vol. 7, No. 6. (15 June 1999), pp. 711-722. by J. Lubkowski, F. Hennecke, A. Plückthun, A. Wlodawer posted to structure phage periplasmic assembly by martainn on 2009-11-13 14:46:12 as
	A morphologic study of filamentous phage infection of Escherichia coli using biotinylated phages. [My Copy] FEBS letters, Vol. 536, No. 1-3. (11 February 2003), pp. 167-172. by Michihiro Nakamura, Kouhei Tsumoto, Izumi Kumagai, Kazunori Ishimura posted to phage periplasmic assembly by martainn on 2009-11-13 14:43:09 as
	Solution structure of the E.coli TolA C-terminal domain reveals conformational changes upon binding to the phage g3p N-terminal domain. [My Copy] Journal of molecular biology, Vol. 346, No. 4. (4 March 2005), pp. 1047-1057. by Christophe Deprez, Roland Lloubès, Marthe Gavioli, Dominique Marion, Françoise Guerlesquin, Laurence Blanchard posted to structure phage binding_mechanisms assembly by martainn on 2009-11-13 14:41:38 as
	The selection of acceptable protein mutations. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 24. (12 June 2007), pp. 10080-10085. by Rajkumar Sasidharan, Cyrus Chothia posted to structure fold-evolution alignment 1barrel by martainn on 2009-11-12 15:52:05 as along with 3 people aalibes gpalidwor zwang
	The relation between the divergence of sequence and structure in proteins. [My Copy] The EMBO journal, Vol. 5, No. 4. (April 1986), pp. 823-826. by C. Chothia, A. M. Lesk posted to structure fold-evolution evolution alignment 1barrel by martainn on 2009-11-12 14:50:55 as along with 13 people and 6 groups ucbcjbm bertelsen semin sgoetz cen4ik ana pansapiens jwm Einat marcius xdeupi ffranca insectopalo structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
	The effect of sequence evolution on protein structural divergence. [My Copy] Molecular biology and evolution, Vol. 26, No. 5. (1 May 2009), pp. 1055-1065. by Simon G. Williams, Simon C. Lovell posted to structure fold-evolution alignment 1barrel by martainn on 2009-11-12 14:27:05 as along with 3 people robfsouza djkt bpcusack
	Structure of Escherichia coli Hfq bound to polyriboadenylate RNA. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (4 November 2009) by Todd M. Link, Poul Valentin-Hansen, Richard G. Brennan posted to structure small-motifs rna_binding rna by martainn on 2009-11-11 15:55:18 as
	High-resolution structure of the rotor ring of a proton-dependent ATP synthase [My Copy] Nature Structural & Molecular Biology, Vol. 16, No. 10. (27 September 2009), pp. 1068-1073. by Denys Pogoryelov, Ozkan Yildiz, Jose D. Faraldo-Gomez, Thomas Meier posted to structure f1fo atpase by martainn on 2009-11-11 14:54:23 as along with 1 person tux2000
	Evolutionary genomics of the HAD superfamily: understanding the structural adaptations and catalytic diversity in a superfamily of phosphoesterases and allied enzymes. [My Copy] Journal of molecular biology, Vol. 361, No. 5. (1 September 2006), pp. 1003-1034. by A. Maxwell Burroughs, Karen N. Allen, Debra Dunaway-Mariano, L. Aravind posted to superfolds structure rna fold-evolution exosome evolution by martainn on 2009-11-11 12:26:30 as along with 3 people robfsouza tny christiw
	DOM-fold: a structure with crossing loops found in DmpA, ornithine acetyltransferase, and molybdenum cofactor-binding domain. [My Copy] Protein science : a publication of the Protein Society, Vol. 14, No. 7. (July 2005), pp. 1902-1910. by Hua Cheng, Nick V. Grishin posted to structure fold-evolution evolution duplication 1barrel by martainn on 2009-11-11 12:09:39 as
	Characterization of SCaMC-3-like/slc25a41, a novel calcium-independent mitochondrial ATP-Mg/Pi carrier. [My Copy] The Biochemical journal, Vol. 418, No. 1. (15 February 2009), pp. 125-133. by Javier Traba, Jorgina Satrústegui, Araceli del Arco posted to mitochondrial fold-evolution comparative_genomics carriers by martainn on 2009-11-10 16:07:49 as
	Mimicking the evolution of a thermally stable monomeric four-helix bundle by fusion of four identical single-helix peptides. [My Copy] Journal of biochemistry (4 November 2009) by Satoshi Akanuma, Taku Matsuba, Emi Ueno, Naoki Umeda, Akihiko Yamagishi posted to structure fold-evolution evolution duplication carriers by martainn on 2009-11-10 16:01:11 as
	Assessment of the probabilities for evolutionary structural changes in protein folds. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 7. (1 April 2007), pp. 832-841. by Juris Viksna, David Gilbert posted to structure fold-evolution duplication comparative_genomics by martainn on 2009-11-10 15:56:35 as along with 1 person kluck
	Convergent evolution of domain architectures (is rare). [My Copy] Bioinformatics (Oxford, England) (7 December 2004) by Julian Gough posted to structure fold-evolution duplication comparative_genomics by martainn on 2009-11-10 15:54:26 as along with 3 people and 2 groups matzke ana barry structural_bioinformatics Bioinformatics
	Domain tree-based analysis of protein architecture evolution. [My Copy] Molecular biology and evolution, Vol. 25, No. 2. (1 February 2008), pp. 254-264. by Kristoffer Forslund, Anna Henricson, Volker Hollich, Erik L. Sonnhammer posted to structure fold-evolution duplication comparative_genomics by martainn on 2009-11-10 15:47:01 as along with 5 people calderonv jameswasmuth cjeans vinithepooh gulkur
	Modeling the evolution of protein domain architectures using maximum parsimony. [My Copy] Journal of molecular biology, Vol. 366, No. 1. (9 February 2007), pp. 307-315. by Jessica H. Fong, Lewis Y. Geer, Anna R. Panchenko, Stephen H. Bryant posted to structure fold-evolution duplication comparative_genomics by martainn on 2009-11-10 15:45:08 as along with 9 people and 3 groups calderonv wiedenhoeft jameswasmuth icases marcius tny choonpeng redelings zwang BioinfoCIPF SGU-CIPF TNT
	Gene fusion/fission is a major contributor to evolution of multi-domain bacterial proteins. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 12. (15 June 2006), pp. 1418-1423. by Sophie Pasek, Jean-Loup L. Risler, Pierre Brézellec posted to structure fold-evolution duplication 1barrel by martainn on 2009-11-10 15:31:21 as along with 1 person wiedenhoeft
	Evolution of gene fusions: horizontal transfer versus independent events. [My Copy] Genome biology, Vol. 3, No. 5. (2002) by Itai Yanai, Yuri I. Wolf, Eugene V. Koonin posted to structure fold-evolution duplication comparative_genomics 1barrel by martainn on 2009-11-10 15:28:39 as
	Evolution of antiparallel two-domain membrane proteins: tracing multiple gene duplication events in the DUF606 family. [My Copy] Journal of molecular biology, Vol. 378, No. 3. (2 May 2008), pp. 596-606. by Juke S. Lolkema, Adam Dobrowolski, Dirk-Jan J. Slotboom posted to structure membrane_proteins fold-evolution duplication by martainn on 2009-11-10 15:25:27 as
	Evolution based on domain combinations: the case of glutaredoxins. [My Copy] BMC evolutionary biology, Vol. 9, No. 1. (2009), 66. by Rui Alves, Ester Vilaprinyo, Albert Sorribas, Enrique Herrero posted to structure fold-evolution duplication by martainn on 2009-11-10 15:11:49 as along with 1 person druvus
	Transmembrane protein domains rarely use covalent domain recombination as an evolutionary mechanism. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 10. (9 March 2004), pp. 3495-3497. by Yang Liu, Mark Gerstein, Donald M. Engelman posted to structure mitochondrial fold-evolution evolution comparative_genomics carriers by martainn on 2009-11-10 15:07:37 as
	MALIDUP: a database of manually constructed structure alignments for duplicated domain pairs. [My Copy] Proteins, Vol. 70, No. 4. (March 2008), pp. 1162-1166. by Hua Cheng, Bong-Hyun H. Kim, Nick V. Grishin posted to structure fold-evolution evolution duplication comparative_genomics 1barrel by martainn on 2009-11-10 14:40:39 as along with 1 person dimka
	Amino and carboxy-terminal regions in globular proteins. [My Copy] Journal of molecular biology, Vol. 167, No. 2. (25 June 1983), pp. 443-460. by J. M. Thornton, B. L. Sibanda posted to superfolds structure fold-evolution evolution by martainn on 2009-11-10 14:26:22 as
	Structural divergence and distant relationships in proteins: evolution of the globins. [My Copy] Current opinion in structural biology, Vol. 15, No. 3. (June 2005), pp. 290-301. by Juliette T. Lecomte, David A. Vuletich, Arthur M. Lesk posted to superfolds structure fold-evolution evolution by martainn on 2009-11-10 10:43:15 as along with 1 person cjeans
	Detecting coevolution in and among protein domains. [My Copy] PLoS computational biology, Vol. 3, No. 11. (1 November 2007), e211. by Chen-Hsiang H. Yeang, David Haussler posted to structure fold-evolution evolution alignment by martainn on 2009-11-10 10:41:43 as along with 13 people and 1 group dfdong balicea skhadar zwang sobolevnrm niallhaslam hpaces mingzhi Ema phoenixzxl penpen926 friendpine pradiptaray baker-group
	COMPASS server for remote homology inference. [My Copy] Nucleic acids research, Vol. 35, No. Web Server issue. (July 2007) by Ruslan I. Sadreyev, Ming Tang, Bong-Hyun H. Kim, Nick V. Grishin posted to structure fold-evolution evolution alignment by martainn on 2009-11-10 09:56:14 as along with 1 person sebk
	Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable data sets. [My Copy] Journal of molecular biology, Vol. 377, No. 4. (4 April 2008), pp. 1265-1278. by Hua Cheng, Bong-Hyun H. Kim, Nick V. Grishin posted to structure fold-evolution alignment by martainn on 2009-11-10 09:51:37 as along with 2 people and 1 group barry cdeane structural_bioinformatics
	The subunit interfaces of oligomeric enzymes are conserved to a similar extent to the overall protein sequences. [My Copy] Protein science : a publication of the Protein Society, Vol. 3, No. 12. (December 1994), pp. 2455-2458. by N. V. Grishin, M. A. Phillips posted to structure fold-evolution duplication assembly by martainn on 2009-11-10 09:44:45 as
	Synonymous codon usage in Lactococcus lactis: mutational bias versus translational selection. [My Copy] Journal of biomolecular structure & dynamics, Vol. 21, No. 4. (February 2004), pp. 527-536. by S. K. Gupta, T. K. Bhattacharyya, T. C. Ghosh posted to lactis expression comparative_genomics by martainn on 2009-11-09 18:20:06 as
	Lactic acid bacteria as prime candidates for codon optimization. [My Copy] Biochemical and biophysical research communications, Vol. 312, No. 2. (12 December 2003), pp. 285-291. by Anders Fuglsang posted to methods lactis expression comparative_genomics by martainn on 2009-11-09 18:17:14 as
	Multiple structural alignment for distantly related all beta structures using TOPS pattern discovery and simulated annealing. [My Copy] Protein engineering, Vol. 16, No. 12. (December 2003), pp. 913-923. by A. Williams, D. R. Gilbert, D. R. Westhead posted to structure fold-evolution alignment by martainn on 2009-11-06 18:50:16 as
	One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions. [My Copy] Journal of molecular biology, Vol. 321, No. 5. (30 August 2002), pp. 741-765. by Nozomi Nagano, Christine A. Orengo, Janet M. Thornton posted to superfolds structure fold-evolution evolution by martainn on 2009-11-06 15:41:56 as along with 2 people tjimenez jwm
	Divergent evolution within protein superfolds inferred from profile-based phylogenetics. [My Copy] Journal of molecular biology, Vol. 354, No. 3. (2 December 2005), pp. 722-737. by Douglas L. Theobald, Deborah S. Wuttke posted to superfolds small-motifs fold-evolution by martainn on 2009-11-06 14:52:50 as along with 6 people and 4 groups cmura yuslinaz ana barry dlr caporaso structural_bioinformatics Bioinformatics biomedical-nlp McCammon
	Supersites within superfolds. Binding site similarity in the absence of homology. [My Copy] Journal of molecular biology, Vol. 282, No. 4. (2 October 1998), pp. 903-918. by R. B. Russell, P. D. Sasieni, M. J. Sternberg posted to superfolds structure small-motifs fold-evolution by martainn on 2009-11-06 14:50:38 as along with 2 people chad_davis nickolay
	Correlation of observed fold frequency with the occurrence of local structural motifs. [My Copy] Journal of molecular biology, Vol. 287, No. 5. (16 April 1999), pp. 969-981. by G. M. Salem, E. G. Hutchinson, C. A. Orengo, J. M. Thornton posted to superfolds structure fold-evolution by martainn on 2009-11-06 14:48:52 as
	Global patterns of mortality in young people: a systematic analysis of population health data. [My Copy] Lancet, Vol. 374, No. 9693. (12 September 2009), pp. 881-892. by George C. Patton, Carolyn Coffey, Susan M. Sawyer, et al.Russell M. Viner, Dagmar M. Haller, Krishna Bose, Theo Vos, Jane Ferguson, Colin D. Mathers posted to traffic cycling by martainn on 2009-11-06 14:35:47 as along with 1 person and 2 groups jago Integrative Expertise for Global Health Global Health
	Oral immunization of mice with recombinant Lactococcus lactis expressing porcine transmissible gastroenteritis virus spike glycoprotein. [My Copy] Virus genes (24 July 2009) by Lijie Tang, Yijing Li posted to vaccine lactis expression by martainn on 2009-11-06 13:05:57 as
	Functional proteins from a random-sequence library. [My Copy] Nature, Vol. 410, No. 6829. (5 April 2001), pp. 715-718. by A. D. Keefe, J. W. Szostak posted to small-motifs non-biological fold-evolution atp-binding by martainn on 2009-11-06 12:49:23 as
	Evolutionary optimization of a nonbiological ATP binding protein for improved folding stability. [My Copy] Chemistry & biology, Vol. 11, No. 6. (June 2004), pp. 865-874. by John C. Chaput, Jack W. Szostak posted to non-biological fold-evolution atp-binding by martainn on 2009-11-06 12:40:40 as
	A case of convergent evolution of nucleic acid binding modules. [My Copy] BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 18, No. 4. (April 1996), pp. 309-315. by P. Graumann, M. A. Marahiel posted to small-motifs rna_binding rna fold-evolution by martainn on 2009-11-06 12:07:57 as
	The YheI/YheH heterodimer from Bacillus subtilis is a multidrug ABC transporter. [My Copy] Biochimica et biophysica acta, Vol. 1788, No. 3. (March 2009), pp. 615-622. by Cristina Torres, Carmen Galián, Christoph Freiberg, Jean-Raphaël R. Fantino, Jean-Michel M. Jault posted to drug-efflux abc_transporter by martainn on 2009-11-06 12:02:11 as
	Structure and evolutionary analysis of a non-biological ATP-binding protein. [My Copy] Journal of molecular biology, Vol. 371, No. 2. (10 August 2007), pp. 501-513. by Sheref S. Mansy, Jinglei Zhang, Rainer Kümmerle, et al.Mikael Nilsson, James J. Chou, Jack W. Szostak, John C. Chaput posted to non-biological fold-evolution evolution atp-binding by martainn on 2009-11-06 11:58:29 as
	Structure of a genetically engineered molecular motor. [My Copy] The EMBO journal, Vol. 20, No. 1-2. (15 January 2001), pp. 40-46. by W. Kliche, S. Fujita-Becker, M. Kollmar, D. J. Manstein, F. J. Kull posted to theory fold-evolution by martainn on 2009-11-06 11:52:54 as
	Interactions of the QacR multidrug-binding protein with structurally diverse ligands: implications for the evolution of the binding pocket. [My Copy] Biochemistry, Vol. 42, No. 51. (30 December 2003), pp. 15226-15236. by Steve Grkovic, Kate M. Hardie, Melissa H. Brown, Ronald A. Skurray posted to fold-evolution drug-efflux by martainn on 2009-11-06 11:50:45 as

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structure	231
virulence	151
fold-evolution	107
drug-efflux	101
tolc	74
3review	70
evolution	66
phage	63
acra	56
1paper	49
type-iii	46
type-i	45
assembly	44
acrb	40
crystallography	39
4grant	33
atpase	31
mutation	31
programs	31
hemolysin	30
pilus	29
adapter	28
inhibitor	28
comparative_genomics	27
vibrio	27
flagella	26
pseudomonas	25
export	24
mexa	24
toxin	24
duplication	23
expression	21
srna	21
coiled-coils	20
ctx	20
beta-sheets	19
secretion	19
fluorescence	17
hlyd	17
4preview	16
docking	16
small-motifs	16
fusion	15
hlyb	15
alignment	14
periplasmic	14
software	14
mitochondrial	13
yersinia	13
carriers	12
colicin	12
salmonella	12
theory	12
1barrel	11
abc_transporter	11
beta-barrel	11
crystallization	11
type-iv	11
colicinv	10
competence	10
fret	10
rna	10
crosslinking	9
effector	9
strategy	9
2discussion	8
gram-positive	8
quorum	8
dynamics	7
indels	7
methods	7
superfolds	7
type-ii	7
virus	7
heat-stable-enterotoxinii	6
heterogeneity	6
mfs	6
pro-isomerization	6
shigella	6
truncation	6
type_i	6
asymmetry	5
dhfr	5
esat-6	5
hfq	5
outer_membrane	5
pseudopilus	5
clostridium	4
cvaa	4
detergents	4
history	4
import	4
membrane_proteins	4
mtx	4
normalmodes	4
plasmid	4
pnpase	4
secretin	4
sipb	4
tolq	4
trp	4
2paper	3
adp-atp	3
apoptosis	3
atp-binding	3
beta-bulge	3
c_difficile	3
c-di-gmp	3
chaperone	3
conjugation	3
crick	3
electrophysiology	3
emre	3
energy_landscape	3
kinetics	3
lactis	3
lipoyl	3
microcin	3
non-biological	3
oprm	3
polar	3
rna_binding	3
rnd	3
semet	3
smr	3
vaccine	3
building	2
channels	2
citrate	2
dispersin	2
dna	2
enolase	2
equatorial	2
flhb	2
h_influenzae	2
mexb	2
mitochondria	2
mitochondrial_disorders	2
neisseria	2
nmr	2
peptidoglycan	2
pilz	2
polysaccharide	2
puld	2
quenching	2
rhodopsin_family	2
single-molecule	2
sv5	2
virg	2
7-transmembrane	1
binding_mechanisms	1
chloride	1
cryo	1
cusb	1
cusf	1
cycling	1
cys	1
darpins	1
em	1
epr	1
ethics	1
exosome	1
f1fo	1
fission	1
flhf	1
human	1
insulin_secretion	1
macab	1
medawar	1
nesseria	1
phage_shock	1
phasing	1
prgk	1
proteasome	1
ros	1
serratia	1
staphylococcus	1
traffic	1

martainn's library 662 articles Export

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