martainn's alignment [14 articles] Export Sort

Recent papers added to martainn's library classified by the tag alignment. You can also see everyone's alignment.

Hide details

	The selection of acceptable protein mutations. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 24. (12 June 2007), pp. 10080-10085. by Rajkumar Sasidharan, Cyrus Chothia posted to structure fold-evolution alignment 1barrel by martainn on 2009-11-12 15:52:05 as along with 3 people aalibes gpalidwor zwang
	The relation between the divergence of sequence and structure in proteins. [My Copy] The EMBO journal, Vol. 5, No. 4. (April 1986), pp. 823-826. by C. Chothia, A. M. Lesk posted to structure fold-evolution evolution alignment 1barrel by martainn on 2009-11-12 14:50:55 as along with 16 people and 6 groups edvin parnell dfdong ucbcjbm bertelsen semin sgoetz cen4ik ana pansapiens jwm Einat marcius xdeupi ffranca insectopalo structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
	The effect of sequence evolution on protein structural divergence. [My Copy] Molecular biology and evolution, Vol. 26, No. 5. (1 May 2009), pp. 1055-1065. by Simon G. Williams, Simon C. Lovell posted to structure fold-evolution alignment 1barrel by martainn on 2009-11-12 14:27:05 as along with 3 people robfsouza djkt bpcusack
	Detecting coevolution in and among protein domains. [My Copy] PLoS computational biology, Vol. 3, No. 11. (1 November 2007), e211. by Chen-Hsiang H. Yeang, David Haussler posted to structure fold-evolution evolution alignment by martainn on 2009-11-10 10:41:43 as along with 13 people and 1 group dfdong balicea skhadar zwang sobolevnrm niallhaslam hpaces mingzhi Ema phoenixzxl penpen926 friendpine pradiptaray baker-group
	COMPASS server for remote homology inference. [My Copy] Nucleic acids research, Vol. 35, No. Web Server issue. (July 2007) by Ruslan I. Sadreyev, Ming Tang, Bong-Hyun H. Kim, Nick V. Grishin posted to structure fold-evolution evolution alignment by martainn on 2009-11-10 09:56:14 as along with 1 person sebk
	Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable data sets. [My Copy] Journal of molecular biology, Vol. 377, No. 4. (4 April 2008), pp. 1265-1278. by Hua Cheng, Bong-Hyun H. Kim, Nick V. Grishin posted to structure fold-evolution alignment by martainn on 2009-11-10 09:51:37 as along with 2 people and 1 group barry cdeane structural_bioinformatics
	Multiple structural alignment for distantly related all beta structures using TOPS pattern discovery and simulated annealing. [My Copy] Protein engineering, Vol. 16, No. 12. (December 2003), pp. 913-923. by A. Williams, D. R. Gilbert, D. R. Westhead posted to structure fold-evolution alignment by martainn on 2009-11-06 18:50:16 as
	The mechanism of transport by mitochondrial carriers based on analysis of symmetry [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 46. (18 November 2008), pp. 17766-17771. by Alan J. Robinson, Catherine Overy, Edmund R. S. Kunji posted to theory structure mitochondrial comparative_genomics channels carriers alignment by martainn on 2009-10-02 12:52:41 as along with 3 people ec430 girayenkavi kshundyak
	Multiple sequence alignments [My Copy] Current Opinion in Structural Biology, Vol. 15, No. 3. (June 2005), pp. 261-266. by Iain M. Wallace, Gordon Blackshields, Desmond G. Higgins posted to alignment evolution fold-evolution programs structure by martainn on 2009-03-12 17:19:01 as along with 5 people Thaverkamp BioNica mdimmic bpb nklee
	Sensitive methods for determining the relatedness of proteins with limited sequence homology. [My Copy] Current opinion in biotechnology, Vol. 5, No. 4. (August 1994), pp. 361-371. by P. Argos posted to alignment fold-evolution programs structure by martainn on 2009-03-12 17:18:06 as
	Sequence context-specific profiles for homology searching [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 10. (10 March 2009), pp. 3770-3775. by A. Biegert, J. Söding posted to alignment fold-evolution programs small-motifs by martainn on 2009-03-12 17:17:12 as along with 7 people yylin ikirmitz TRHvidsten operon dakelley phoenixzxl zwang
	Two novel families of bacterial membrane proteins concerned with nodulation, cell division and transport. [My Copy] Molecular microbiology, Vol. 11, No. 5. (March 1994), pp. 841-847. by M. H. Saier, R. Tam, A. Reizer, J. Reizer posted to adapter alignment drug-efflux fold-evolution type_i by martainn on 2009-01-27 17:37:59 as
	SISYPHUS--structural alignments for proteins with non-trivial relationships. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (January 2007) by A. Andreeva, A. Prlić, T. J. Hubbard, A. G. Murzin posted to alignment fold-evolution structure by martainn on 2007-04-27 16:40:28 as along with 5 people and 2 groups timhubbard ana barry dgront massivemayhem structural_bioinformatics Bioinformatics
	MUSCLE: multiple sequence alignment with high accuracy and high throughput [My Copy] Nucl. Acids Res., Vol. 32, No. 5. (19 March 2004), pp. 1792-1797. by Robert C. Edgar posted to alignment evolution fold-evolution software by martainn on 2007-04-27 15:00:54 as along with 29 people and 2 groups mgomes jeargle tomjad foxpowa esyoun natstreet dquest BioNica gjuggler edvin yylin treangen sebk agustinarce fhsantanna nachtalp bpb chrn jwm Haggan sanchezbuelna timflutre olympos newton1234 skumagai bmaust sconlan dmp kcrawlik Radiation_Damage Stressosome

Note: You may cite this page as: http://www.citeulike.org/user/martainn/tag/alignment

Sort by:
Order:	Default Ascending Descending
Empty fields:	Default First Last

structure	237
virulence	151
fold-evolution	109
drug-efflux	101
tolc	74
3review	70
evolution	66
phage	63
acra	56
1paper	49
type-iii	46
assembly	45
type-i	45
crystallography	41
acrb	40
4grant	33
mutation	32
atpase	31
programs	31
hemolysin	30
inhibitor	29
pilus	29
adapter	28
comparative_genomics	27
vibrio	27
flagella	26
pseudomonas	25
mexa	24
export	24
toxin	24
duplication	23
expression	21
srna	21
coiled-coils	20
ctx	20
beta-sheets	19
secretion	19
hlyd	17
fluorescence	17
small-motifs	16
4preview	16
docking	16
fusion	15
hlyb	15
crystallization	15
carriers	15
software	14
periplasmic	14
alignment	14
theory	13
mitochondrial	13
yersinia	13
colicin	12
salmonella	12
strategy	12
type-iv	11
abc_transporter	11
1barrel	11
beta-barrel	11
fret	10
crosslinking	10
rna	10
colicinv	10
competence	10
dynamics	9
effector	9
membrane_proteins	9
2discussion	8
methods	8
quorum	8
gram-positive	8
heterogeneity	7
type-ii	7
detergents	7
virus	7
superfolds	7
indels	7
mfs	6
shigella	6
heat-stable-enterotoxinii	6
pro-isomerization	6
type_i	6
truncation	6
kinetics	6
hfq	5
outer_membrane	5
channels	5
asymmetry	5
dhfr	5
pseudopilus	5
esat-6	5
plasmid	4
clostridium	4
pnpase	4
import	4
cvaa	4
mtx	4
trp	4
secretin	4
tolq	4
normalmodes	4
history	4
sipb	4
c-di-gmp	3
beta-bulge	3
apoptosis	3
rnd	3
vaccine	3
emre	3
electrophysiology	3
energy_landscape	3
smr	3
c_difficile	3
adp-atp	3
oprm	3
lactis	3
conjugation	3
non-biological	3
crick	3
rna_binding	3
microcin	3
atp-binding	3
polar	3
semet	3
2paper	3
chaperone	3
lipoyl	3
mitochondria	2
mexb	2
dispersin	2
dna	2
polysaccharide	2
puld	2
building	2
enolase	2
flhb	2
sv5	2
h_influenzae	2
nmr	2
equatorial	2
pilz	2
single-molecule	2
quenching	2
mitochondrial_disorders	2
rhodopsin_family	2
neisseria	2
peptidoglycan	2
citrate	2
virg	2
cryo	1
phasing	1
cusb	1
insulin_secretion	1
staphylococcus	1
em	1
human	1
prgk	1
medawar	1
binding_mechanisms	1
7-transmembrane	1
macab	1
exosome	1
serratia	1
cys	1
flhf	1
chloride	1
f1fo	1
ros	1
nesseria	1
cusf	1
cycling	1
epr	1
traffic	1
phage_shock	1
fission	1
ethics	1
darpins	1
proteasome	1

martainn's alignment [14 articles] Export Sort

martainn's tags