martainn's evolution [66 articles] Export

Recent papers added to martainn's library classified by the tag evolution. You can also see everyone's evolution.

	The relation between the divergence of sequence and structure in proteins. [My Copy] The EMBO journal, Vol. 5, No. 4. (April 1986), pp. 823-826. by C. Chothia, A. M. Lesk posted to structure fold-evolution evolution alignment 1barrel by martainn on 2009-11-12 14:50:55 as along with 15 people and 6 groups parnell dfdong ucbcjbm bertelsen semin sgoetz cen4ik ana pansapiens jwm Einat marcius xdeupi ffranca insectopalo structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
	Evolutionary genomics of the HAD superfamily: understanding the structural adaptations and catalytic diversity in a superfamily of phosphoesterases and allied enzymes. [My Copy] Journal of molecular biology, Vol. 361, No. 5. (1 September 2006), pp. 1003-1034. by A. Maxwell Burroughs, Karen N. Allen, Debra Dunaway-Mariano, L. Aravind posted to superfolds structure rna fold-evolution exosome evolution by martainn on 2009-11-11 12:26:30 as along with 3 people robfsouza tny christiw
	DOM-fold: a structure with crossing loops found in DmpA, ornithine acetyltransferase, and molybdenum cofactor-binding domain. [My Copy] Protein science : a publication of the Protein Society, Vol. 14, No. 7. (July 2005), pp. 1902-1910. by Hua Cheng, Nick V. Grishin posted to structure fold-evolution evolution duplication 1barrel by martainn on 2009-11-11 12:09:39 as
	Mimicking the evolution of a thermally stable monomeric four-helix bundle by fusion of four identical single-helix peptides. [My Copy] Journal of biochemistry (4 November 2009) by Satoshi Akanuma, Taku Matsuba, Emi Ueno, Naoki Umeda, Akihiko Yamagishi posted to structure fold-evolution evolution duplication carriers by martainn on 2009-11-10 16:01:11 as
	Transmembrane protein domains rarely use covalent domain recombination as an evolutionary mechanism. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 10. (9 March 2004), pp. 3495-3497. by Yang Liu, Mark Gerstein, Donald M. Engelman posted to structure mitochondrial fold-evolution evolution comparative_genomics carriers by martainn on 2009-11-10 15:07:37 as
	MALIDUP: a database of manually constructed structure alignments for duplicated domain pairs. [My Copy] Proteins, Vol. 70, No. 4. (March 2008), pp. 1162-1166. by Hua Cheng, Bong-Hyun H. Kim, Nick V. Grishin posted to structure fold-evolution evolution duplication comparative_genomics 1barrel by martainn on 2009-11-10 14:40:39 as along with 1 person dimka
	Amino and carboxy-terminal regions in globular proteins. [My Copy] Journal of molecular biology, Vol. 167, No. 2. (25 June 1983), pp. 443-460. by J. M. Thornton, B. L. Sibanda posted to superfolds structure fold-evolution evolution by martainn on 2009-11-10 14:26:22 as
	Structural divergence and distant relationships in proteins: evolution of the globins. [My Copy] Current opinion in structural biology, Vol. 15, No. 3. (June 2005), pp. 290-301. by Juliette T. Lecomte, David A. Vuletich, Arthur M. Lesk posted to superfolds structure fold-evolution evolution by martainn on 2009-11-10 10:43:15 as along with 1 person cjeans
	Detecting coevolution in and among protein domains. [My Copy] PLoS computational biology, Vol. 3, No. 11. (1 November 2007), e211. by Chen-Hsiang H. Yeang, David Haussler posted to structure fold-evolution evolution alignment by martainn on 2009-11-10 10:41:43 as along with 13 people and 1 group dfdong balicea skhadar zwang sobolevnrm niallhaslam hpaces mingzhi Ema phoenixzxl penpen926 friendpine pradiptaray baker-group
	COMPASS server for remote homology inference. [My Copy] Nucleic acids research, Vol. 35, No. Web Server issue. (July 2007) by Ruslan I. Sadreyev, Ming Tang, Bong-Hyun H. Kim, Nick V. Grishin posted to structure fold-evolution evolution alignment by martainn on 2009-11-10 09:56:14 as along with 1 person sebk
	One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions. [My Copy] Journal of molecular biology, Vol. 321, No. 5. (30 August 2002), pp. 741-765. by Nozomi Nagano, Christine A. Orengo, Janet M. Thornton posted to superfolds structure fold-evolution evolution by martainn on 2009-11-06 15:41:56 as along with 2 people tjimenez jwm
	Structure and evolutionary analysis of a non-biological ATP-binding protein. [My Copy] Journal of molecular biology, Vol. 371, No. 2. (10 August 2007), pp. 501-513. by Sheref S. Mansy, Jinglei Zhang, Rainer Kümmerle, et al.Mikael Nilsson, James J. Chou, Jack W. Szostak, John C. Chaput posted to non-biological fold-evolution evolution atp-binding by martainn on 2009-11-06 11:58:29 as
	Three strategically placed hydrogen-bonding residues convert a proton pump into a sensory receptor. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 44. (31 October 2006), pp. 16129-16134. by Yuki Sudo, John L. Spudich posted to structure rhodopsin_family mutation evolution 7-transmembrane by martainn on 2009-11-05 15:33:58 as
	Discrete–continuous duality of protein structure space [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 3. (29 June 2009), pp. 321-328. by Ruslan I. Sadreyev, Bong-Hyun Kim, Nick V. Grishin posted to structure fold-evolution evolution 1barrel by martainn on 2009-09-08 17:27:49 as along with 4 people and 1 group skywalkerus02 philomorph davidalee paulschlesinger Orengo Group Journal Picks
	Revised structure of the AbrB N-terminal domain unifies a diverse superfamily of putative DNA-binding proteins. [My Copy] FEBS letters, Vol. 579, No. 25. (24 October 2005), pp. 5669-5674. by Benjamin G. Bobay, Antonina Andreeva, Geoffrey A. Mueller, John Cavanagh, Alexey G. Murzin posted to structure fold-evolution evolution beta-sheets 1barrel by martainn on 2009-09-08 16:15:24 as
	Structural diversity of domain superfamilies in the CATH database. [My Copy] Journal of molecular biology, Vol. 360, No. 3. (14 July 2006), pp. 725-741. by Gabrielle A. Reeves, Timothy J. Dallman, Oliver C. Redfern, Adrian Akpor, Christine A. Orengo posted to structure evolution duplication 1barrel by martainn on 2009-09-08 15:59:27 as along with 4 people and 5 groups yuslinaz barry marcius sobolevnrm structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF baker-group
	Nature of the protein universe. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 27. (7 July 2009), pp. 11079-11084. by Michael Levitt posted to structure evolution duplication 1barrel by martainn on 2009-09-08 15:12:19 as along with 10 people and 1 group kintoki pmung ldiambra VGreiff carlosjavierna philcarter TRHvidsten paulschlesinger apaydin renatomilani Orengo Group Journal Picks
	Studying membrane proteins through the eyes of the genetic code revealed a strong uracil bias in their coding mRNAs. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (6 April 2009) by Jaime Prilusky, Eitan Bibi posted to evolution rna by martainn on 2009-04-22 15:12:04 as
	Snowdrift game dynamics and facultative cheating in yeast [My Copy] Nature, Vol. 459, No. 7244. (06 April 2009), pp. 253-256. by Jeff Gore, Hyun Youk, Alexander van Oudenaarden posted to evolution strategy virulence by martainn on 2009-04-09 17:04:18 as along with 7 people maren Annab jasontsai phoenixzxl hryk pkner jbhiatt
	Hypermutability impedes cooperation in pathogenic bacteria. [My Copy] Current biology : CB, Vol. 15, No. 21. (8 November 2005), pp. 1968-1971. by F. Harrison, A. Buckling posted to evolution pseudomonas quorum strategy virulence by martainn on 2009-04-09 16:58:47 as along with 1 person dbikard
	Spite and virulence in the bacterium Pseudomonas aeruginosa. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 14. (7 April 2009), pp. 5703-5707. by R. F. Inglis, A. Gardner, P. Cornelis, A. Buckling posted to colicin evolution pseudomonas quorum virulence by martainn on 2009-04-09 16:53:26 as
	Multiple sequence alignments [My Copy] Current Opinion in Structural Biology, Vol. 15, No. 3. (June 2005), pp. 261-266. by Iain M. Wallace, Gordon Blackshields, Desmond G. Higgins posted to alignment evolution fold-evolution programs structure by martainn on 2009-03-12 17:19:01 as along with 5 people Thaverkamp BioNica mdimmic bpb nklee
	Translocases: a bacterial tunnel for drugs and proteins. [My Copy] Current biology : CB, Vol. 10, No. 18. (21 September 2000) by K. Lewis posted to 3review drug-efflux evolution hlyb hlyd mfs outer_membrane tolc by martainn on 2009-02-26 16:23:53 as
	The forgotten Gram-negative bacilli: what genetic determinants are telling us about the spread of antibiotic resistance. [My Copy] Biochemical pharmacology, Vol. 71, No. 7. (30 March 2006), pp. 1073-1084. by T. D. Gootz posted to drug-efflux evolution pseudomonas virulence by martainn on 2009-02-23 17:41:18 as
	Expression and biochemical characterization of the periplasmic domain of bacterial outer membrane porin TdeA. [My Copy] Journal of microbiology and biotechnology, Vol. 18, No. 5. (May 2008), pp. 845-851. by S. Kim, S. Yum, W. S. Jo, B. L. Lee, M. H. Jeong, N. C. Ha posted to evolution mutation tolc type_i by martainn on 2008-11-04 15:01:38 as
	An ABC transporter with a secondary-active multidrug translocator domain [My Copy] Nature, Vol. 426, No. 6968. (18 December 2003), pp. 866-870. by Henrietta Venter, Richard A. Shilling, Saroj Velamakanni, Lekshmy Balakrishnan, Hendrik W. van Veen posted to atpase drug-efflux evolution fold-evolution by martainn on 2008-11-03 17:07:01 as along with 1 person EvaKaltenborn
	Open-and-shut cases in coiled-coil assembly: alpha-sheets and alpha-cylinders. [My Copy] Protein science : a publication of the Protein Society, Vol. 10, No. 3. (March 2001), pp. 668-673. by J. Walshaw, D. N. Woolfson posted to coiled-coils docking evolution programs by martainn on 2008-10-07 13:02:34 as along with 1 person kgutwin
	Extended knobs-into-holes packing in classical and complex coiled-coil assemblies. [My Copy] Journal of structural biology, Vol. 144, No. 3. (December 2003), pp. 349-361. by John Walshaw, Derek N. Woolfson posted to 1paper coiled-coils docking evolution programs by martainn on 2008-10-07 13:01:24 as along with 4 people TLVincent kgutwin gbartbristol ca3295
	Socket: a program for identifying and analysing coiled-coil motifs within protein structures. [My Copy] Journal of molecular biology, Vol. 307, No. 5. (13 April 2001), pp. 1427-1450. by J. Walshaw, D. N. Woolfson posted to coiled-coils docking evolution programs by martainn on 2008-10-07 13:00:41 as along with 5 people TLVincent oteri kgutwin gbartbristol ca3295
	A novel helper phage that improves phage display selection efficiency by preventing the amplification of phages without recombinant protein. [My Copy] Nucleic Acids Res, Vol. 31, No. 11. (1 June 2003) by R. A. Kramer, F. Cox, M. van der Horst, et al.S. van der Oudenrijn, P. C. Res, J. Bia, T. Logtenberg, J. de Kruif posted to evolution export expression phage by martainn on 2008-03-28 18:22:23 as
	Prevalence of cholera toxin genes (ctxA and zot) among non-O1/O139 Vibrio cholerae strains from Newport Bay, California. [My Copy] Appl Environ Microbiol, Vol. 69, No. 12. (December 2003), pp. 7541-7544. by S. Jiang, W. Chu, W. Fu posted to ctx evolution phage toxin vibrio virulence by martainn on 2008-03-18 18:37:31 as
	Infectious CTXPhi and the vibrio pathogenicity island prophage in Vibrio mimicus: evidence for recent horizontal transfer between V. mimicus and V. cholerae. [My Copy] Infect Immun, Vol. 68, No. 3. (March 2000), pp. 1507-1513. by E. F. Boyd, K. E. Moyer, L. Shi, M. K. Waldor posted to comparative_genomics ctx evolution phage pilus vibrio virulence by martainn on 2008-03-18 17:37:21 as
	Phage variation: understanding the behaviour of an accidental pathogen. [My Copy] Trends Microbiol, Vol. 13, No. 12. (December 2005), pp. 563-565. by E. R. Moxon, V. A. Jansen posted to comparative_genomics evolution phage pilus virulence by martainn on 2008-03-12 15:45:58 as
	The mechanism of outer membrane penetration by the eubacterial flagellum and implications for spirochete evolution. [My Copy] Genes Dev, Vol. 21, No. 18. (15 September 2007), pp. 2326-2335. by F. F. Chevance, N. Takahashi, J. E. Karlinsey, et al.J. Gnerer, T. Hirano, R. Samudrala, S. Aizawa, K. T. Hughes posted to assembly evolution flagella structure by martainn on 2008-03-11 13:38:49 as
	Rule-based modelling of conjugative plasmid transfer and incompatibility. [My Copy] Biosystems, Vol. 91, No. 1. (January 2008), pp. 201-215. by R. Gregory, J. R. Saunders, V. A. Saunders posted to conjugation evolution plasmid theory virulence by martainn on 2008-03-06 14:59:55 as
	Identification of Mycobacterium marinum virulence genes using signature-tagged mutagenesis and the goldfish model of mycobacterial pathogenesis. [My Copy] FEMS Microbiol Lett, Vol. 232, No. 1. (12 March 2004), pp. 75-81. by K. M. Ruley, J. H. Ansede, C. L. Pritchett, A. M. Talaat, R. Reimschuessel, M. Trucksis posted to comparative_genomics evolution gram-positive virulence by martainn on 2008-02-28 17:42:23 as
	A horizontally acquired filamentous phage contributes to the pathogenicity of the plague bacillus [My Copy] Molecular Microbiology, Vol. 63, No. 4. (February 2007), pp. 1145-1157. by Derbise, Anne, Chenal-Francisque, et al. Viviane, Pouillot, Flavie, Fayolle, Corinne, Prevost, Marie-Christine, Medigue, Claudine, Hinnebusch, Bernard Joseph, Carniel, Elisabeth posted to evolution phage virulence yersinia by martainn on 2008-02-21 17:08:51 as
	Blue-Light-Activated Histidine Kinases: Two-Component Sensors in Bacteria [My Copy] Science, Vol. 317, No. 5841. (24 August 2007), pp. 1090-1093. by Trevor E. Swartz, Tong-Seung Tseng, Marcus A. Frederickson, et al.Gaston Paris, Diego J. Comerci, Gireesh Rajashekara, Jung-Gun Kim, Mary B. Mudgett, Gary A. Splitter, Rodolfo A. Ugalde, Fernando A. Goldbaum, Winslow R. Briggs, Roberto A. Bogomolni posted to evolution virulence by martainn on 2008-02-21 16:35:38 as
	Design and evolution of artificial M13 coat proteins. [My Copy] J Mol Biol, Vol. 300, No. 1. (30 June 2000), pp. 213-219. by G. A. Weiss, S. S. Sidhu posted to assembly evolution fold-evolution phage by martainn on 2008-02-19 17:18:38 as
	Fitting periplasmic membrane fusion proteins to inner membrane transporters: mutations that enable Escherichia coli AcrA to function with Pseudomonas aeruginosa MexB. [My Copy] J Bacteriol, Vol. 190, No. 2. (January 2008), pp. 691-698. by G. Krishnamoorthy, E. B. Tikhonova, H. I. Zgurskaya posted to 1paper 2discussion 3review acra acrb drug-efflux evolution mexa mutation by martainn on 2008-02-19 17:03:18 as
	Toxins-antitoxins: plasmid maintenance, programmed cell death, and cell cycle arrest. [My Copy] Science, Vol. 301, No. 5639. (12 September 2003), pp. 1496-1499. by F. Hayes posted to evolution plasmid toxin by martainn on 2008-02-19 16:53:54 as
	A type IV-secretion-like system is required for conjugative DNA transport of broad-host-range plasmid pIP501 in gram-positive bacteria. [My Copy] J Bacteriol, Vol. 189, No. 6. (March 2007), pp. 2487-2496. by M. Y. Abajy, J. Kopeć, K. Schiwon, et al.M. Burzynski, M. Döring, C. Bohn, E. Grohmann posted to conjugation evolution gram-positive type-iv by martainn on 2008-02-19 16:48:26 as
	The persistence of parasitic plasmids. [My Copy] Genetics, Vol. 177, No. 1. (September 2007), pp. 399-405. by L. N. Lili, N. F. Britton, E. J. Feil posted to conjugation evolution plasmid by martainn on 2008-02-19 16:46:57 as along with 1 person gwenknight
	High-frequency interconversion of turbid and clear plaque strains of bacteriophage f1 and associated host cell death. [My Copy] Can J Microbiol, Vol. 46, No. 9. (September 2000), pp. 841-847. by M. Y. Kuo, M. K. Yang, W. P. Chen, T. T. Kuo posted to assembly evolution phage virulence by martainn on 2008-02-14 17:16:29 as
	Why microbial predators and parasites do not eliminate their prey and hosts. [My Copy] Annu Rev Microbiol, Vol. 35 (1981), pp. 113-133. by M. Alexander posted to comparative_genomics evolution virulence by martainn on 2008-02-14 16:54:16 as
	Comprehensive mutagenesis of the C-terminal domain of the M13 gene-3 minor coat protein: the requirements for assembly into the bacteriophage particle. [My Copy] J Mol Biol, Vol. 332, No. 4. (26 September 2003), pp. 777-782. by G. A. Weiss, T. A. Roth, P. F. Baldi, S. S. Sidhu posted to assembly evolution phage by martainn on 2008-02-13 18:24:13 as
	A minimized M13 coat protein defines the requirements for assembly into the bacteriophage particle. [My Copy] J Mol Biol, Vol. 322, No. 2. (13 September 2002), pp. 357-367. by T. A. Roth, G. A. Weiss, C. Eigenbrot, S. S. Sidhu posted to assembly evolution phage by martainn on 2008-02-13 18:22:21 as
	Genomic analysis of the Mozambique strain of Vibrio cholerae O1 reveals the origin of El Tor strains carrying classical CTX prophage. [My Copy] Proc Natl Acad Sci U S A, Vol. 104, No. 12. (20 March 2007), pp. 5151-5156. by S. M. Faruque, V. C. Tam, N. Chowdhury, et al.P. Diraphat, M. Dziejman, J. F. Heidelberg, J. D. Clemens, J. J. Mekalanos, G. B. Nair posted to ctx evolution phage vibrio virulence by martainn on 2008-02-13 12:00:22 as
	Genomic sequence and receptor for the Vibrio cholerae phage KSF-1phi: evolutionary divergence among filamentous vibriophages mediating lateral gene transfer. [My Copy] J Bacteriol, Vol. 187, No. 12. (June 2005), pp. 4095-4103. by S. M. Faruque, I. Bin Naser, K. Fujihara, et al.P. Diraphat, N. Chowdhury, M. Kamruzzaman, F. Qadri, S. Yamasaki, A. N. Ghosh, J. J. Mekalanos posted to ctx evolution phage toxin vibrio virulence by martainn on 2008-02-07 16:22:26 as
	Variability and robustness in biomolecular systems. [My Copy] Mol Cell, Vol. 28, No. 5. (14 December 2007), pp. 755-760. by N. Barkai, B. Z. Shilo posted to evolution by martainn on 2008-01-28 18:17:55 as along with 1 person guhjy

Note: You may cite this page as: http://www.citeulike.org/user/martainn/tag/evolution

Result page: 1 2 Next

structure	237
virulence	151
fold-evolution	109
drug-efflux	101
tolc	74
3review	70
evolution	66
phage	63
acra	56
1paper	49
type-iii	46
assembly	45
type-i	45
crystallography	41
acrb	40
4grant	33
mutation	32
atpase	31
programs	31
hemolysin	30
inhibitor	29
pilus	29
adapter	28
comparative_genomics	27
vibrio	27
flagella	26
pseudomonas	25
mexa	24
export	24
toxin	24
duplication	23
expression	21
srna	21
coiled-coils	20
ctx	20
beta-sheets	19
secretion	19
hlyd	17
fluorescence	17
small-motifs	16
4preview	16
docking	16
fusion	15
hlyb	15
crystallization	15
carriers	15
software	14
periplasmic	14
alignment	14
theory	13
mitochondrial	13
yersinia	13
colicin	12
salmonella	12
strategy	12
type-iv	11
abc_transporter	11
1barrel	11
beta-barrel	11
fret	10
crosslinking	10
rna	10
colicinv	10
competence	10
dynamics	9
effector	9
membrane_proteins	9
2discussion	8
methods	8
quorum	8
gram-positive	8
heterogeneity	7
type-ii	7
detergents	7
virus	7
superfolds	7
indels	7
mfs	6
shigella	6
heat-stable-enterotoxinii	6
pro-isomerization	6
type_i	6
truncation	6
kinetics	6
hfq	5
outer_membrane	5
channels	5
asymmetry	5
dhfr	5
pseudopilus	5
esat-6	5
plasmid	4
clostridium	4
pnpase	4
import	4
cvaa	4
mtx	4
trp	4
secretin	4
tolq	4
normalmodes	4
history	4
sipb	4
c-di-gmp	3
beta-bulge	3
apoptosis	3
rnd	3
vaccine	3
emre	3
electrophysiology	3
energy_landscape	3
smr	3
c_difficile	3
adp-atp	3
oprm	3
lactis	3
conjugation	3
non-biological	3
crick	3
rna_binding	3
microcin	3
atp-binding	3
polar	3
semet	3
2paper	3
chaperone	3
lipoyl	3
mitochondria	2
mexb	2
dispersin	2
dna	2
polysaccharide	2
puld	2
building	2
enolase	2
flhb	2
sv5	2
h_influenzae	2
nmr	2
equatorial	2
pilz	2
single-molecule	2
quenching	2
mitochondrial_disorders	2
rhodopsin_family	2
neisseria	2
peptidoglycan	2
citrate	2
virg	2
cryo	1
phasing	1
cusb	1
insulin_secretion	1
staphylococcus	1
em	1
human	1
prgk	1
medawar	1
binding_mechanisms	1
7-transmembrane	1
macab	1
exosome	1
serratia	1
cys	1
flhf	1
chloride	1
f1fo	1
ros	1
nesseria	1
cusf	1
cycling	1
epr	1
traffic	1
phage_shock	1
fission	1
ethics	1
darpins	1
proteasome	1

martainn's evolution [66 articles] Export

martainn's tags