martainn's structure [at least 200 articles] Export

Recent papers added to martainn's library classified by the tag structure. You can also see everyone's structure.

	A competitive inhibitor traps LeuT in an open-to-out conformation. [My Copy] Science (New York, N.Y.), Vol. 322, No. 5908. (12 December 2008), pp. 1655-1661. by Satinder K. Singh, Chayne L. Piscitelli, Atsuko Yamashita, Eric Gouaux posted to structure membrane_proteins kinetics inhibitor channels carriers by martainn on 2009-11-23 15:59:55 as along with 1 person tprpip
	Coupling substrate and ion binding to extracellular gate of a sodium-dependent aspartate transporter. [My Copy] Nature, Vol. 445, No. 7126. (25 January 2007), pp. 387-393. by Olga Boudker, Renae M. Ryan, Dinesh Yernool, Keiko Shimamoto, Eric Gouaux posted to structure membrane_proteins channels carriers by martainn on 2009-11-23 15:58:51 as
	Transport mechanism of a bacterial homologue of glutamate transporters. [My Copy] Nature (18 November 2009) by Nicolas Reyes, Christopher Ginter, Olga Boudker posted to structure mutation crystallization crosslinking channels carriers by martainn on 2009-11-23 15:57:24 as
	Supercooled liquid-like solvent in trypsin crystals: implications for crystal annealing and temperature-controlled X-ray radiation damage studies. [My Copy] Journal of synchrotron radiation, Vol. 12, No. Pt 3. (May 2005), pp. 310-317. by M. Weik, A. M. Schreurs, H. K. Leiros, G. Zaccai, R. B. Ravelli, P. Gros posted to structure methods crystallization cryo by martainn on 2009-11-16 17:57:21 as
	The prolyl isomerase PIN1: a pivotal new twist in phosphorylation signalling and disease. [My Copy] Nature reviews. Molecular cell biology, Vol. 8, No. 11. (November 2007), pp. 904-916. by Kun Ping P. Lu, Xiao Zhen Z. Zhou posted to structure pro-isomerization inhibitor by martainn on 2009-11-16 12:44:54 as
	A remote prolyl isomerization controls domain assembly via a hydrogen bonding network. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 30. (28 July 2009), pp. 12335-12340. by Ulrich Weininger, Roman P. Jakob, Barbara Eckert, Kristian Schweimer, Franz X. Schmid, Jochen Balbach posted to structure pro-isomerization phage assembly by martainn on 2009-11-16 12:13:24 as
	Filamentous phage infection: crystal structure of g3p in complex with its coreceptor, the C-terminal domain of TolA. [My Copy] Structure (London, England : 1993), Vol. 7, No. 6. (15 June 1999), pp. 711-722. by J. Lubkowski, F. Hennecke, A. Plückthun, A. Wlodawer posted to structure phage periplasmic assembly by martainn on 2009-11-13 14:46:12 as
	Solution structure of the E.coli TolA C-terminal domain reveals conformational changes upon binding to the phage g3p N-terminal domain. [My Copy] Journal of molecular biology, Vol. 346, No. 4. (4 March 2005), pp. 1047-1057. by Christophe Deprez, Roland Lloubès, Marthe Gavioli, Dominique Marion, Françoise Guerlesquin, Laurence Blanchard posted to structure phage binding_mechanisms assembly by martainn on 2009-11-13 14:41:38 as
	The selection of acceptable protein mutations. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 24. (12 June 2007), pp. 10080-10085. by Rajkumar Sasidharan, Cyrus Chothia posted to structure fold-evolution alignment 1barrel by martainn on 2009-11-12 15:52:05 as along with 3 people aalibes gpalidwor zwang
	The relation between the divergence of sequence and structure in proteins. [My Copy] The EMBO journal, Vol. 5, No. 4. (April 1986), pp. 823-826. by C. Chothia, A. M. Lesk posted to structure fold-evolution evolution alignment 1barrel by martainn on 2009-11-12 14:50:55 as along with 14 people and 6 groups dfdong ucbcjbm bertelsen semin sgoetz cen4ik ana pansapiens jwm Einat marcius xdeupi ffranca insectopalo structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
	The effect of sequence evolution on protein structural divergence. [My Copy] Molecular biology and evolution, Vol. 26, No. 5. (1 May 2009), pp. 1055-1065. by Simon G. Williams, Simon C. Lovell posted to structure fold-evolution alignment 1barrel by martainn on 2009-11-12 14:27:05 as along with 3 people robfsouza djkt bpcusack
	Structure of Escherichia coli Hfq bound to polyriboadenylate RNA. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (4 November 2009) by Todd M. Link, Poul Valentin-Hansen, Richard G. Brennan posted to structure small-motifs rna_binding rna by martainn on 2009-11-11 15:55:18 as
	High-resolution structure of the rotor ring of a proton-dependent ATP synthase [My Copy] Nature Structural & Molecular Biology, Vol. 16, No. 10. (27 September 2009), pp. 1068-1073. by Denys Pogoryelov, Ozkan Yildiz, Jose D. Faraldo-Gomez, Thomas Meier posted to structure f1fo atpase by martainn on 2009-11-11 14:54:23 as along with 1 person tux2000
	Evolutionary genomics of the HAD superfamily: understanding the structural adaptations and catalytic diversity in a superfamily of phosphoesterases and allied enzymes. [My Copy] Journal of molecular biology, Vol. 361, No. 5. (1 September 2006), pp. 1003-1034. by A. Maxwell Burroughs, Karen N. Allen, Debra Dunaway-Mariano, L. Aravind posted to superfolds structure rna fold-evolution exosome evolution by martainn on 2009-11-11 12:26:30 as along with 3 people robfsouza tny christiw
	DOM-fold: a structure with crossing loops found in DmpA, ornithine acetyltransferase, and molybdenum cofactor-binding domain. [My Copy] Protein science : a publication of the Protein Society, Vol. 14, No. 7. (July 2005), pp. 1902-1910. by Hua Cheng, Nick V. Grishin posted to structure fold-evolution evolution duplication 1barrel by martainn on 2009-11-11 12:09:39 as
	Mimicking the evolution of a thermally stable monomeric four-helix bundle by fusion of four identical single-helix peptides. [My Copy] Journal of biochemistry (4 November 2009) by Satoshi Akanuma, Taku Matsuba, Emi Ueno, Naoki Umeda, Akihiko Yamagishi posted to structure fold-evolution evolution duplication carriers by martainn on 2009-11-10 16:01:11 as
	Assessment of the probabilities for evolutionary structural changes in protein folds. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 7. (1 April 2007), pp. 832-841. by Juris Viksna, David Gilbert posted to structure fold-evolution duplication comparative_genomics by martainn on 2009-11-10 15:56:35 as along with 1 person kluck
	Convergent evolution of domain architectures (is rare). [My Copy] Bioinformatics (Oxford, England) (7 December 2004) by Julian Gough posted to structure fold-evolution duplication comparative_genomics by martainn on 2009-11-10 15:54:26 as along with 3 people and 2 groups matzke ana barry structural_bioinformatics Bioinformatics
	Domain tree-based analysis of protein architecture evolution. [My Copy] Molecular biology and evolution, Vol. 25, No. 2. (1 February 2008), pp. 254-264. by Kristoffer Forslund, Anna Henricson, Volker Hollich, Erik L. Sonnhammer posted to structure fold-evolution duplication comparative_genomics by martainn on 2009-11-10 15:47:01 as along with 5 people calderonv jameswasmuth cjeans vinithepooh gulkur
	Modeling the evolution of protein domain architectures using maximum parsimony. [My Copy] Journal of molecular biology, Vol. 366, No. 1. (9 February 2007), pp. 307-315. by Jessica H. Fong, Lewis Y. Geer, Anna R. Panchenko, Stephen H. Bryant posted to structure fold-evolution duplication comparative_genomics by martainn on 2009-11-10 15:45:08 as along with 9 people and 3 groups calderonv wiedenhoeft jameswasmuth icases marcius tny choonpeng redelings zwang BioinfoCIPF SGU-CIPF TNT
	Gene fusion/fission is a major contributor to evolution of multi-domain bacterial proteins. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 12. (15 June 2006), pp. 1418-1423. by Sophie Pasek, Jean-Loup L. Risler, Pierre Brézellec posted to structure fold-evolution duplication 1barrel by martainn on 2009-11-10 15:31:21 as along with 1 person wiedenhoeft
	Evolution of gene fusions: horizontal transfer versus independent events. [My Copy] Genome biology, Vol. 3, No. 5. (2002) by Itai Yanai, Yuri I. Wolf, Eugene V. Koonin posted to structure fold-evolution duplication comparative_genomics 1barrel by martainn on 2009-11-10 15:28:39 as
	Evolution of antiparallel two-domain membrane proteins: tracing multiple gene duplication events in the DUF606 family. [My Copy] Journal of molecular biology, Vol. 378, No. 3. (2 May 2008), pp. 596-606. by Juke S. Lolkema, Adam Dobrowolski, Dirk-Jan J. Slotboom posted to structure membrane_proteins fold-evolution duplication by martainn on 2009-11-10 15:25:27 as
	Evolution based on domain combinations: the case of glutaredoxins. [My Copy] BMC evolutionary biology, Vol. 9, No. 1. (2009), 66. by Rui Alves, Ester Vilaprinyo, Albert Sorribas, Enrique Herrero posted to structure fold-evolution duplication by martainn on 2009-11-10 15:11:49 as along with 1 person druvus
	Transmembrane protein domains rarely use covalent domain recombination as an evolutionary mechanism. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 10. (9 March 2004), pp. 3495-3497. by Yang Liu, Mark Gerstein, Donald M. Engelman posted to structure mitochondrial fold-evolution evolution comparative_genomics carriers by martainn on 2009-11-10 15:07:37 as
	MALIDUP: a database of manually constructed structure alignments for duplicated domain pairs. [My Copy] Proteins, Vol. 70, No. 4. (March 2008), pp. 1162-1166. by Hua Cheng, Bong-Hyun H. Kim, Nick V. Grishin posted to structure fold-evolution evolution duplication comparative_genomics 1barrel by martainn on 2009-11-10 14:40:39 as along with 1 person dimka
	Amino and carboxy-terminal regions in globular proteins. [My Copy] Journal of molecular biology, Vol. 167, No. 2. (25 June 1983), pp. 443-460. by J. M. Thornton, B. L. Sibanda posted to superfolds structure fold-evolution evolution by martainn on 2009-11-10 14:26:22 as
	Structural divergence and distant relationships in proteins: evolution of the globins. [My Copy] Current opinion in structural biology, Vol. 15, No. 3. (June 2005), pp. 290-301. by Juliette T. Lecomte, David A. Vuletich, Arthur M. Lesk posted to superfolds structure fold-evolution evolution by martainn on 2009-11-10 10:43:15 as along with 1 person cjeans
	Detecting coevolution in and among protein domains. [My Copy] PLoS computational biology, Vol. 3, No. 11. (1 November 2007), e211. by Chen-Hsiang H. Yeang, David Haussler posted to structure fold-evolution evolution alignment by martainn on 2009-11-10 10:41:43 as along with 13 people and 1 group dfdong balicea skhadar zwang sobolevnrm niallhaslam hpaces mingzhi Ema phoenixzxl penpen926 friendpine pradiptaray baker-group
	COMPASS server for remote homology inference. [My Copy] Nucleic acids research, Vol. 35, No. Web Server issue. (July 2007) by Ruslan I. Sadreyev, Ming Tang, Bong-Hyun H. Kim, Nick V. Grishin posted to structure fold-evolution evolution alignment by martainn on 2009-11-10 09:56:14 as along with 1 person sebk
	Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable data sets. [My Copy] Journal of molecular biology, Vol. 377, No. 4. (4 April 2008), pp. 1265-1278. by Hua Cheng, Bong-Hyun H. Kim, Nick V. Grishin posted to structure fold-evolution alignment by martainn on 2009-11-10 09:51:37 as along with 2 people and 1 group barry cdeane structural_bioinformatics
	The subunit interfaces of oligomeric enzymes are conserved to a similar extent to the overall protein sequences. [My Copy] Protein science : a publication of the Protein Society, Vol. 3, No. 12. (December 1994), pp. 2455-2458. by N. V. Grishin, M. A. Phillips posted to structure fold-evolution duplication assembly by martainn on 2009-11-10 09:44:45 as
	Multiple structural alignment for distantly related all beta structures using TOPS pattern discovery and simulated annealing. [My Copy] Protein engineering, Vol. 16, No. 12. (December 2003), pp. 913-923. by A. Williams, D. R. Gilbert, D. R. Westhead posted to structure fold-evolution alignment by martainn on 2009-11-06 18:50:16 as
	One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions. [My Copy] Journal of molecular biology, Vol. 321, No. 5. (30 August 2002), pp. 741-765. by Nozomi Nagano, Christine A. Orengo, Janet M. Thornton posted to superfolds structure fold-evolution evolution by martainn on 2009-11-06 15:41:56 as along with 2 people tjimenez jwm
	Supersites within superfolds. Binding site similarity in the absence of homology. [My Copy] Journal of molecular biology, Vol. 282, No. 4. (2 October 1998), pp. 903-918. by R. B. Russell, P. D. Sasieni, M. J. Sternberg posted to superfolds structure small-motifs fold-evolution by martainn on 2009-11-06 14:50:38 as along with 2 people chad_davis nickolay
	Correlation of observed fold frequency with the occurrence of local structural motifs. [My Copy] Journal of molecular biology, Vol. 287, No. 5. (16 April 1999), pp. 969-981. by G. M. Salem, E. G. Hutchinson, C. A. Orengo, J. M. Thornton posted to superfolds structure fold-evolution by martainn on 2009-11-06 14:48:52 as
	Structure-function relationships of the C-terminal end of the Saccharomyces cerevisiae ADP/ATP carrier isoform 2. [My Copy] The Journal of biological chemistry, Vol. 283, No. 17. (25 April 2008), pp. 11218-11225. by Benjamin Clémençon, Martial Rey, Anne-Christine C. Dianoux, et al.Véronique Trézéguet, Guy J-M J. Lauquin, Gérard Brandolin, Ludovic Pelosi posted to truncation structure mitochondrial carriers adp-atp by martainn on 2009-11-05 15:53:26 as
	Proline residues in transmembrane alpha helices affect the folding of bacteriorhodopsin. [My Copy] Journal of molecular biology, Vol. 308, No. 2. (27 April 2001), pp. 437-446. by H. Lu, T. Marti, P. J. Booth posted to structure rhodopsin_family pro-isomerization membrane_proteins by martainn on 2009-11-05 15:36:18 as
	Three strategically placed hydrogen-bonding residues convert a proton pump into a sensory receptor. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 44. (31 October 2006), pp. 16129-16134. by Yuki Sudo, John L. Spudich posted to structure rhodopsin_family mutation evolution 7-transmembrane by martainn on 2009-11-05 15:33:58 as
	True identity of a diffraction pattern attributed to valyl tRNA. [My Copy] Nature, Vol. 303, No. 5914. (5 1983), pp. 195-196. by W. A. Hendrickson, B. E. Strandberg, A. Liljas, L. M. Amzel, E. E. Lattman posted to structure rna history crystallography crystallization by martainn on 2009-10-28 16:41:09 as
	Inhibitors of the Mitochondrial Citrate Transport Protein: Validation of the Role of Substrate Binding Residues and Discovery of the First Purely Competitive Inhibitor. [My Copy] Molecular pharmacology (20 October 2009) by Sreevidya Aluvila, Jiakang Sun, David H. Harrison, D. Eric Walters, Ronald S. Kaplan posted to structure mitochondrial inhibitor citrate carriers by martainn on 2009-10-28 13:59:44 as
	KH domain: one motif, two folds. [My Copy] Nucleic acids research, Vol. 29, No. 3. (1 February 2001), pp. 638-643. by N. V. Grishin posted to structure small-motifs rna_binding 4preview by martainn on 2009-10-09 12:35:29 as
	Historical review: another 50th anniversary--new periodicities in coiled coils. [My Copy] Trends in biochemical sciences, Vol. 28, No. 12. (December 2003), pp. 679-685. by Markus Gruber, Andrei N. Lupas posted to structure history crick coiled-coils by martainn on 2009-10-09 12:22:34 as along with 2 people TLVincent pansapiens
	Generalized Crick equations for modeling noncanonical coiled coils. [My Copy] Journal of structural biology, Vol. 137, No. 1-2. (b 2002), pp. 41-53. by Gerald Offer, Matthew R. Hicks, Derek N. Woolfson posted to theory structure crick coiled-coils by martainn on 2009-10-09 12:20:50 as along with 3 people and 1 group kgutwin oteri chgjb Structural Biology Group TorVergata
	Relations between structure and function of the mitochondrial ADP/ATP carrier. [My Copy] Annual review of biochemistry, Vol. 75 (2006), pp. 713-741. by H. Nury, C. Dahout-Gonzalez, V. Trézéguet, G. J. Lauquin, G. Brandolin, E. Pebay-Peyroula posted to structure mutation mitochondrial carriers by martainn on 2009-10-06 17:13:10 as along with 1 person blasco_morozzo
	Diseases caused by defects of mitochondrial carriers: a review. [My Copy] Biochimica et biophysica acta, Vol. 1777, No. 7-8. (g 2008), pp. 564-578. by Ferdinando Palmieri posted to structure mutation mitochondrial_disorders mitochondrial carriers by martainn on 2009-10-02 18:31:46 as
	The mechanism of transport by mitochondrial carriers based on analysis of symmetry [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 46. (18 November 2008), pp. 17766-17771. by Alan J. Robinson, Catherine Overy, Edmund R. S. Kunji posted to theory structure mitochondrial comparative_genomics channels carriers alignment by martainn on 2009-10-02 12:52:41 as along with 3 people ec430 girayenkavi kshundyak
	Discrete–continuous duality of protein structure space [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 3. (29 June 2009), pp. 321-328. by Ruslan I. Sadreyev, Bong-Hyun Kim, Nick V. Grishin posted to structure fold-evolution evolution 1barrel by martainn on 2009-09-08 17:27:49 as along with 4 people and 1 group skywalkerus02 philomorph davidalee paulschlesinger Orengo Group Journal Picks
	Revised structure of the AbrB N-terminal domain unifies a diverse superfamily of putative DNA-binding proteins. [My Copy] FEBS letters, Vol. 579, No. 25. (24 October 2005), pp. 5669-5674. by Benjamin G. Bobay, Antonina Andreeva, Geoffrey A. Mueller, John Cavanagh, Alexey G. Murzin posted to structure fold-evolution evolution beta-sheets 1barrel by martainn on 2009-09-08 16:15:24 as
	Structural diversity of domain superfamilies in the CATH database. [My Copy] Journal of molecular biology, Vol. 360, No. 3. (14 July 2006), pp. 725-741. by Gabrielle A. Reeves, Timothy J. Dallman, Oliver C. Redfern, Adrian Akpor, Christine A. Orengo posted to structure evolution duplication 1barrel by martainn on 2009-09-08 15:59:27 as along with 4 people and 5 groups yuslinaz barry marcius sobolevnrm structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF baker-group

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structure	234
virulence	151
fold-evolution	107
drug-efflux	101
tolc	74
3review	70
evolution	66
phage	63
acra	56
1paper	49
type-iii	46
type-i	45
assembly	44
acrb	40
crystallography	39
4grant	33
mutation	32
atpase	31
programs	31
hemolysin	30
pilus	29
inhibitor	29
adapter	28
comparative_genomics	27
vibrio	27
flagella	26
pseudomonas	25
export	24
toxin	24
mexa	24
duplication	23
expression	21
srna	21
ctx	20
coiled-coils	20
secretion	19
beta-sheets	19
hlyd	17
fluorescence	17
docking	16
small-motifs	16
4preview	16
hlyb	15
fusion	15
carriers	15
periplasmic	14
software	14
alignment	14
mitochondrial	13
yersinia	13
theory	12
crystallization	12
salmonella	12
colicin	12
type-iv	11
beta-barrel	11
1barrel	11
abc_transporter	11
crosslinking	10
fret	10
rna	10
competence	10
colicinv	10
effector	9
strategy	9
quorum	8
gram-positive	8
2discussion	8
dynamics	7
virus	7
superfolds	7
methods	7
indels	7
type-ii	7
pro-isomerization	6
heterogeneity	6
type_i	6
heat-stable-enterotoxinii	6
truncation	6
mfs	6
membrane_proteins	6
shigella	6
channels	5
outer_membrane	5
hfq	5
asymmetry	5
dhfr	5
esat-6	5
pseudopilus	5
tolq	4
mtx	4
pnpase	4
cvaa	4
import	4
normalmodes	4
clostridium	4
history	4
plasmid	4
sipb	4
kinetics	4
detergents	4
trp	4
secretin	4
c-di-gmp	3
beta-bulge	3
adp-atp	3
vaccine	3
c_difficile	3
oprm	3
electrophysiology	3
microcin	3
atp-binding	3
crick	3
polar	3
chaperone	3
semet	3
energy_landscape	3
lactis	3
emre	3
rnd	3
conjugation	3
lipoyl	3
non-biological	3
apoptosis	3
2paper	3
smr	3
rna_binding	3
mitochondria	2
mexb	2
dispersin	2
dna	2
polysaccharide	2
puld	2
building	2
enolase	2
flhb	2
sv5	2
h_influenzae	2
nmr	2
equatorial	2
pilz	2
single-molecule	2
quenching	2
mitochondrial_disorders	2
rhodopsin_family	2
neisseria	2
peptidoglycan	2
citrate	2
virg	2
cryo	1
phasing	1
cusb	1
insulin_secretion	1
staphylococcus	1
em	1
human	1
prgk	1
medawar	1
binding_mechanisms	1
7-transmembrane	1
macab	1
exosome	1
serratia	1
cys	1
flhf	1
chloride	1
f1fo	1
ros	1
nesseria	1
cusf	1
cycling	1
epr	1
traffic	1
phage_shock	1
fission	1
ethics	1
darpins	1
proteasome	1

martainn's structure [at least 200 articles] Export

martainn's tags