marti's library 150 articles Export

	Discovering statistically significant biclusters in gene expression data. [My Copy] Bioinformatics (Oxford, England), Vol. 18 Suppl 1 (2002) by Amos Tanay, Roded Sharan, Ron Shamir posted to biclustering by marti on 2009-11-05 14:33:56 as along with 11 people and 2 groups tonamswish ihpark ggrot okarsligil lfriedl incovoma dps dragonrez tvdbulck carlk librain kdl Bioinformatics
	Extracting conserved gene expression motifs from gene expression data. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2003), pp. 77-88. by T. M. Murali, Simon Kasif posted to biclustering by marti on 2009-11-05 14:16:06 as along with 1 person ggrot
	Plaid Models for Gene Expression Data [My Copy] Statistica Sinica, Vol. 12 (2000), pp. 61-86. by Laura Lazzeroni, Art Owen posted to biclustering by marti on 2009-11-05 14:09:23 as
	Biclustering algorithms for biological data analysis: a survey. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM In IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 1, No. 1. (r 2004), pp. 24-45. by Sara C. Madeira, Arlindo L. Oliveira posted to biclustering by marti on 2009-10-30 16:43:02 as along with 14 people socwangnan jurgenjanes zufar ilyashl saman_vp ihpark tvdbulck librain dps bozdagd ealloza carlk chrisamiller tmmurali
	Biclustering of expression data. [My Copy] Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology, Vol. 8 (2000), pp. 93-103. by Y. Cheng, G. M. Church posted to biclustering by marti on 2009-10-30 15:49:38 as along with 5 people parnell ihpark wnpx tvdbulck dragonrez
	BicAT: a biclustering analysis toolbox. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 10. (15 May 2006), pp. 1282-1283. by Simon Barkow, Stefan Bleuler, Amela Prelic, Philip Zimmermann, Eckart Zitzler posted to biclustering by marti on 2009-10-27 15:27:40 as along with 2 people jurgenjanes dragonrez
	BiVisu: Software Tool for Bicluster Detection and Visualization [My Copy] Bioinformatics, Vol. 23, No. 17. (22 June 2007), pp. btm338-2344. by K. O. Cheng, N. F. Law, W. C. Siu, T. H. Lau posted to biclustering by marti on 2009-10-27 15:26:09 as along with 2 people sebastien_vigneau rdiaz
	Bayesian biclustering of gene expression data. [My Copy] BMC genomics, Vol. 9 Suppl 1, No. Suppl 1. (2008), S4. by Jiajun Gu, Jun S. Liu posted to microarray_data biclustering by marti on 2009-10-22 15:47:06 as along with 8 people dolchan tonamswish bertelsen imina tvdbulck jfr yangc dragonrez
	BiGGEsTS: integrated environment for biclustering analysis of time series gene expression data [My Copy] BMC Research Notes, Vol. 2, No. 1. (2009), 124. by Joana Goncalves, Sara Madeira, Arlindo Oliveira posted to microarray_data biclustering by marti on 2009-10-22 15:45:03 as
	QUBIC: a qualitative biclustering algorithm for analyses of gene expression data. [My Copy] Nucleic acids research, Vol. 37, No. 15. (1 August 2009), e101. by Guojun Li, Qin Ma, Haibao Tang, Andrew H. Paterson, Ying Xu posted to microarray_data biclustering by marti on 2009-10-22 15:43:07 as along with 7 people and 1 group davidalee meanerelk rdiaz gbloeb fpattyn tmmurali yaredo Orengo Group Journal Picks
	Biclustering microarray data by Gibbs sampling. [My Copy] Bioinformatics (Oxford, England), Vol. 19 Suppl 2 (October 2003) by Qizheng Sheng, Yves Moreau, Bart De Moor posted to microarray_data biclustering by marti on 2009-10-22 12:27:48 as along with 3 people akastrin surajitray tvdbulck
	Emergent unsupervised clustering paradigms with potential application to bioinformatics. [My Copy] Frontiers in bioscience : a journal and virtual library, Vol. 13 (2008), pp. 677-690. by David J. Miller, Yue Wang, George Kesidis posted to review biclustering by marti on 2009-10-21 17:54:08 as along with 5 people svozil bozdagd bertelsen VGreiff dps
	ZDOCK: an initial-stage protein-docking algorithm. [My Copy] Proteins, Vol. 52, No. 1. (1 July 2003), pp. 80-87. by Rong Chen, Li Li, Zhiping Weng posted to docking by marti on 2009-08-27 12:59:06 as along with 5 people and 2 groups jwm bicko ffranca gruppo selrac Radiation_Damage Stressosome
	Inference of macromolecular assemblies from crystalline state. [My Copy] Journal of molecular biology, Vol. 372, No. 3. (21 September 2007), pp. 774-797. by Evgeny Krissinel, Kim Henrick posted to validation pisa complexes by marti on 2009-08-27 12:57:04 as along with 3 people rico bicko chad_davis
	Evaluation of comparative protein modeling by MODELLER. [My Copy] Proteins, Vol. 23, No. 3. (November 1995), pp. 318-326. by A. Sali, L. Potterton, F. Yuan, H. van Vlijmen, M. Karplus posted to modeling by marti on 2009-08-27 12:53:57 as along with 2 people bratwurst richter80
	A census of human transcription factors: function, expression and evolution [My Copy] Nat Rev Genet, Vol. 10, No. 4. (April 2009), pp. 252-263. by Juan M. Vaquerizas, Sarah K. Kummerfeld, Sarah A. Teichmann, Nicholas M. Luscombe posted to evolution function gene-expression transcriptionfactor by marti on 2009-07-30 17:27:23 as along with 11 people PabloMarin absterga engelhardt lwaldron cassj daforerog druvus nuin oannes megraw idonaldson
	Expressing the human genome. [My Copy] Nature, Vol. 409, No. 6822. (15 February 2001), pp. 832-833. by R. Tupler, G. Perini, M. R. Green posted to gene-expression transcriptionfactor by marti on 2009-07-30 17:26:49 as along with 2 people balicea hplatero
	PiQSi: protein quaternary structure investigation. [My Copy] Structure (London, England : 1993), Vol. 15, No. 11. (November 2007), pp. 1364-1367. by E. D. Levy posted to pqs structure by marti on 2009-07-16 14:11:53 as along with 2 people robfsouza bicko
	Aggregation-Prone Motifs in Human Immunoglobulin G. [My Copy] Journal of molecular biology (13 June 2009) by Naresh Chennamsetty, Bernhard Helk, Vladimir Voynov, Veysel Kayser, Bernhardt L. Trout posted to aggregation immunoglobulin motifs by marti on 2009-07-15 15:47:13 as
	Design of therapeutic proteins with enhanced stability. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 29. (21 July 2009), pp. 11937-11942. by Naresh Chennamsetty, Vladimir Voynov, Veysel Kayser, Bernhard Helk, Bernhardt L. Trout posted to protein-design by marti on 2009-07-15 15:46:13 as along with 5 people guhjy biomcgary phoenixzxl edws zwang
	Knowledge-based protein secondary structure assignment [My Copy] Proteins: Structure, Function, and Genetics, Vol. 23, No. 4. (December 1995), pp. 566-579. by Dmitrij Frishman, Patrick Argos posted to prediction secondary-structure stride by marti on 2009-07-15 15:43:31 as along with 4 people ashaytan3 rpetrenko choonpeng saravan
	Computational prediction of transcription-factor binding site locations. [My Copy] Genome biology, Vol. 5, No. 1. (2003) by Martha L. Bulyk posted to binding prediction transcriptionfactor by marti on 2009-07-15 14:35:39 as along with 9 people and 1 group Baschl tkmaia kaarsinogen lusk Stew nklee yevishere xili03 aalibes EisenLab
	Human Protein Reference Database--2009 update. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (6 January 2009), gkn892. by T. S. Keshava Prasad, Renu Goel, Kumaran Kandasamy, et al.Shivakumar Keerthikumar, Sameer Kumar, Suresh Mathivanan, Deepthi Telikicherla, Rajesh Raju, Beema Shafreen, Abhilash Venugopal, Lavanya Balakrishnan, Arivusudar Marimuthu, Sutopa Banerjee, Devi S. Somanathan, Aimy Sebastian, Sandhya Rani, Somak Ray, C. J. Harrys Kishore, Sashi Kanth, Mukhtar Ahmed, Manoj K. Kashyap, Riaz Mohmood, Y. L. Ramachandra, V. Krishna, B. Abdul Rahiman, Sujatha Mohan, Prathibha Ranganathan, Subhashri Ramabadran, Raghothama Chaerkady, Akhilesh Pandey posted to interactions network by marti on 2009-07-07 11:51:54 as along with 7 people shikin swp09 ipark-kaist diamantis sjcockell mpitman renatomilani
	Development of Human Protein Reference Database as an Initial Platform for Approaching Systems Biology in Humans [My Copy] Genome Research, Vol. 13, No. 10. (October 2003), pp. 2363-2371. by Suraj Peri, J. Daniel Navarro, Ramars Amanchy, et al.Troels Z. Kristiansen, Chandra K. Jonnalagadda, Vineeth Surendranath, Vidya Niranjan, Babylakshmi Muthusamy, T. K. B. Gandhi, Mads Gronborg, Nieves Ibarrola, Nandan Deshpande, K. Shanker, H. N. Shivashankar, B. P. Rashmi, M. A. Ramya, Zhixing Zhao, K. N. Chandrika, N. Padma, H. C. Harsha, A. J. Yatish, M. P. Kavitha, Minal Menezes, Dipanwita R. Choudhury, Shubha Suresh, Neelanjana Ghosh, R. Saravana, Sreenath Chandran, Subhalakshmi Krishna, Mary Joy, Sanjeev K. Anand, V. Madavan, Ansamma Joseph, Guang W. Wong, William P. Schiemann, Stefan N. Constantinescu, Lily Huang, Roya Khosravi-Far, Hanno Steen, Muneesh Tewari, Saghi Ghaffari, Gerard C. Blobe, Chi V. Dang, Joe G. N. Garcia, Jonathan Pevsner, Ole N. Jensen, Peter Roepstorff, Krishna S. Deshpande, Arul M. Chinnaiyan, Ada Hamosh, Aravinda Chakravarti, Akhilesh Pandey posted to interactions network by marti on 2009-07-07 11:51:36 as along with 6 people and 1 group semin jeremymiller aelef miguel maryee bundschu generif_paper
	NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins [My Copy] Nucleic Acids Research, Vol. 35, No. Supplement 1. (January 2007), pp. D61-D65. by Pruitt, D. Kim, Tatusova, Tatiana, Maglott, R. Donna posted to refseq by marti on 2009-06-17 16:41:32 as along with 2 people shikin nlapalu
	Gene Ontology: tool for the unification of biology [My Copy] Nature Genetics, Vol. 25, No. 1. (01 May 2000), pp. 25-29. by Michael Ashburner, Catherine A. Ball, Judith A. Blake, et al.David Botstein, Heather Butler, J. Michael Cherry, Allan P. Davis, Kara Dolinski, Selina S. Dwight, Janan T. Eppig, Midori A. Harris, David P. Hill, Laurie Issel-Tarver, Andrew Kasarskis, Suzanna Lewis, John C. Matese, Joel E. Richardson, Martin Ringwald, Gerald M. Rubin, Gavin Sherlock posted to go by marti on 2009-06-17 12:40:22 as along with 71 people and 7 groups niallhaslam Zephyrus nicklynch mauriceccy pmendes jperkins timhubbard ipark-kaist jeremymiller vkwn MarcoAlvarez humburg mqbphcw3 kiekyon karinlag ocs robert85 allysonlister daforerog chasmand lawraga jorisslob bertelsen mshossain ajbattle paszkows coela fbristow kshameer anthropomorphism nolodie dagmar Robinder verdicchio raistrick vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele CitoJam pablomendes carlk marck dgront roys rvosa fongenae BTS-PT-AS-CS kdl Bioinformatics EisenLab T_lab biomedical-nlp FAB-lab
	Assessing phylogenetic motif models for predicting transcription factor binding sites [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i339-347. by John Hawkins, Charles Grant, William S. Noble, Timothy L. Bailey posted to binding phylogeny transcriptionfactor by marti on 2009-06-17 11:56:32 as along with 8 people and 3 groups dquest Stew Lombardo_7 megraw operon nuin AlexBateman scjparker EisenLab Bioinformatics - CRUK Journal picks
	Toward a gold standard for promoter prediction evaluation. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. i313-320. by Thomas Abeel, Yves Van de Peer, Yvan Saeys posted to prediction promoter by marti on 2009-06-17 11:55:45 as along with 6 people and 1 group daforerog dquest druvus AlexBateman tonamswish djkt Journal picks
	Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. 1513-1520. by Nurcan Tuncbag, Attila Gursoy, Ozlem Keskin posted to hotspot interfaces prediction by marti on 2009-06-17 11:54:48 as along with 5 people and 1 group dfdong ubcg08l apaydin kshameer phoenixzxl structural_bioinformatics
	Correlation of expression profiles between microRNAs and mRNA targets using NCI-60 data. [My Copy] BMC genomics, Vol. 10, No. 1. (2009), 218. by Yu-Ping P. Wang, Kuo-Bin B. Li posted to expression-profile by marti on 2009-06-09 16:45:42 as along with 10 people and 1 group guhjy giovenko lwaldron daforerog samgj shikin ealloza dswan natstreet Stew Bioinformatics - CRUK
	Concentration and Length Dependence of DNA Looping in Transcriptional Regulation [My Copy] PLoS ONE, Vol. 4, No. 5. (25 May 2009), e5621. by Lin Han, Hernan G. Garcia, Seth Blumberg, et al.Kevin B. Towles, John F. Beausang, Philip C. Nelson, Rob Phillips posted to transcriptionfactor by marti on 2009-06-09 11:31:05 as
	Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (1 August 2008), e1000140. by Elena Zotenko, Julian Mestre, Dianne P. O'Leary, Teresa M. Przytycka posted to hub network by marti on 2009-06-03 17:17:40 as along with 12 people and 1 group lawraga chrisamiller kaarsinogen jfr aramata jmjimenez srp33 maralena cabbagesofdoom shikin cerca tmmurali GeneGo
	Protein wrapping: a molecular marker for association, aggregation and drug design. [My Copy] Chemical Society reviews, Vol. 37, No. 11. (November 2008), pp. 2373-2382. by A. Fernández, A. Crespo posted to hbonds by marti on 2009-05-13 11:37:16 as
	The nonconserved wrapping of conserved protein folds reveals a trend toward increasing connectivity in proteomic networks. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 9. (2 March 2004), pp. 2823-2827. by A. Fernández, R. Scott, R. S. Berry posted to hbonds interactions network by marti on 2009-05-13 11:36:50 as along with 2 people and 2 groups barry baaden structural_bioinformatics Bioinformatics
	Dehydron: a structurally encoded signal for protein interaction. [My Copy] Biophys J, Vol. 85, No. 3. (September 2003), pp. 1914-1928. by A. Fernández, R. Scott posted to hbonds by marti on 2009-05-13 11:36:13 as along with 4 people and 2 groups dkoveal BragilMassoud barry Evangelia structural_bioinformatics Bioinformatics
	Proteins with H-bond packing defects are highly interactive with lipid bilayers: Implications for amyloidogenesis [My Copy] Proceedings of the National Academy of Sciences, Vol. 100, No. 5. (4 March 2003), pp. 2391-2396. by Ariel Fernandez, Stephen R. Berry posted to hbonds by marti on 2009-05-13 11:35:54 as along with 1 person and 2 groups barry structural_bioinformatics Bioinformatics
	Insufficiently dehydrated hydrogen bonds as determinants of protein interactions. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 1. (7 January 2003), pp. 113-118. by A. Fernández, H. A. Scheraga posted to hbonds interactions by marti on 2009-05-13 11:35:39 as along with 3 people and 2 groups dkoveal BragilMassoud barry structural_bioinformatics Bioinformatics
	Protein domain interfaces: characterization and comparison with oligomeric protein interfaces [My Copy] Protein Eng., Vol. 13, No. 2. (1 February 2000), pp. 77-82. by Susan Jones, Antoine Marin, Thornton posted to interfaces obligate-transient by marti on 2009-05-12 15:01:08 as along with 1 person csrocha
	Progress and challenges in predicting protein-protein interaction sites [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 233-246. by Iakes Ezkurdia, Lisa Bartoli, Piero Fariselli, Rita Casadio, Alfonso Valencia, Michael L. Tress posted to interfaces prediction by marti on 2009-04-30 18:02:09 as along with 9 people and 1 group flbarroso biomcgary nanonan apaydin neils reyez barry renatomilani iakes McCammon
	A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications. [My Copy] Protein Sci, Vol. 13, No. 4. (April 2004), pp. 1043-1055. by O. Keskin, C. J. Tsai, H. Wolfson, R. Nussinov posted to dataset interfaces by marti on 2009-03-29 19:28:46 as along with 8 people flbarroso thomaskelder baaden bicko chad_davis nickolay henschel ladab
	Hot regions in protein--protein interactions: the organization and contribution of structurally conserved hot spot residues. [My Copy] J Mol Biol, Vol. 345, No. 5. (4 February 2005), pp. 1281-1294. by O. Keskin, B. Ma, R. Nussinov posted to conservation hotspot interactions by marti on 2009-02-23 14:09:11 as along with 9 people and 2 groups mdimmic ana barry baaden okarsligil bicko j3xucite bilab xz structural_bioinformatics Bioinformatics
	Protein-protein interactions: organization, cooperativity and mapping in a bottom-up Systems Biology approach. [My Copy] Physical biology, Vol. 2, No. 2. (June 2005) by Ozlem Keskin, Buyong Ma, Kristina Rogale, K. Gunasekaran, Ruth Nussinov posted to cooperation hotspot interactions by marti on 2009-02-23 14:08:49 as along with 3 people bicko choonpeng higueruelo
	Prediction of Protein–Protein Interaction Sites in Sequences and 3D Structures by Random Forests [My Copy] PLoS Comput Biol, Vol. 5, No. 1. (30 January 2009), e1000278. by Mile Šikić, Sanja Tomić, Kristian Vlahoviček posted to interactions prediction sequence structure by marti on 2009-02-12 10:45:12 as along with 7 people and 2 groups roys svozil barry grahamc higueruelo kshameer neils structural_bioinformatics McCammon
	Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature [My Copy] Bioinformatics (12 November 2008), btn583. by Jiansheng Wu, Hongde Liu, Xueye Duan, et al.Yan Ding, Hongtao Wu, Yunfei Bai, Xiao Sun posted to dna-binding prediction by marti on 2009-01-15 18:06:14 as along with 2 people lptolik hugowill
	Specificity and evolvability in eukaryotic protein interaction networks. [My Copy] PLoS computational biology, Vol. 3, No. 2. (16 February 2007), e25. by Pedro Beltrao, Luis Serrano posted to evolution interactions network by marti on 2009-01-13 16:29:43 as along with 6 people saket chica kiekyon aalibes dylan77 aheilbut
	Architectures and functional coverage of protein-protein interfaces. [My Copy] Journal of molecular biology, Vol. 381, No. 3. (5 September 2008), pp. 785-802. by Nurcan Tuncbag, Attila Gursoy, Emre Guney, Ruth Nussinov, Ozlem Keskin posted to complexes interfaces by marti on 2008-12-17 14:17:44 as along with 1 person daforerog
	Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions [My Copy] PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e178. by Ramon Aragues, Andrej Sali, Jaume Bonet, Marc A. Marti-Renom, Baldo Oliva posted to hub interactions by marti on 2008-11-24 17:58:49 as along with 3 people zwang winterschlaefer Ema
	Predicting Protein Function with Hierarchical Phylogenetic Profiles: The Gene3D Phylo-Tuner Method Applied to Eukaryotic Genomes [My Copy] PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e237. by Juan A. Ranea, Corin Yeats, Alastair Grant, Christine A. Orengo posted to function prediction by marti on 2008-11-24 17:57:24 as along with 5 people and 1 group eckart_bindewald skhadar zwang asddd hpaces Orengo Group functional genomics watchlist
	Structure of the intact PPAR-[ggr]-RXR-[agr] nuclear receptor complex on DNA [My Copy] Nature (29 October 2008), pp. 350-356. by Vikas Chandra, Pengxiang Huang, Yoshitomo Hamuro, et al.Srilatha Raghuram, Yongjun Wang, Thomas P. Burris, Fraydoon Rastinejad posted to cooperation transcriptionfactor by marti on 2008-11-21 15:26:35 as along with 2 people yhkim anazhu
	Annotating nucleic acid-binding function based on protein structure. [My Copy] J Mol Biol, Vol. 326, No. 4. (28 February 2003), pp. 1065-1079. by E. W. Stawiski, L. M. Gregoret, Y. Mandel-Gutfreund posted to dna-binding prediction by marti on 2008-10-30 15:46:34 as along with 1 person kaarsinogen

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prediction	39
interfaces	38
interactions	35
transcriptionfactor	18
biclustering	12
phylogeny	9
msa	8
evolution	7
obligate-transient	7
binding	6
docking	6
hotspot	6
network	6
review	6
structure	6
conservation	5
hbonds	5
alignments	4
hub	4
microarray_data	4
complexes	3
dataset	3
kaks	3
pops	3
blast	2
clusters	2
cooperation	2
dna-binding	2
flexibility	2
function	2
gene-expression	2
secondary-structure	2
sequence	2
acv	1
aggregation	1
bayesian	1
database	1
disease	1
disordered-regions	1
domain	1
dssp	1
entropy	1
exonerate	1
exposure	1
expression-profile	1
go	1
hmm	1
homology-modelling	1
immunoglobulin	1
measure	1
meta-methods	1
modeling	1
motifs	1
mutual_information	1
mutual-information	1
oligomerization	1
patch	1
pisa	1
pqs	1
profiles	1
promoter	1
protein-design	1
refseq	1
stride	1
surface	1
svm	1
unbound	1
validation	1

marti's library 150 articles Export

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