maryee's library 78 articles Export

	Yeast two-hybrid contributions to interactome mapping [My Copy] Current Opinion in Biotechnology In Protein technologies, Vol. 17, No. 4. (August 2006), pp. 387-393. by Jodi R. Parrish, Keith D. Gulyas, Jr Finley posted to accelerating_mapping interactome by maryee on 2007-01-04 17:14:50 as along with 6 people and 2 groups dchughes eukfn nm grahamc cmor bethbromley G4ID Genetics-of-Gambling
	Assessing reliability of gene clusters from gene expression data. [My Copy] Funct Integr Genomics, Vol. 1, No. 3. (November 2000), pp. 156-173. by K. Zhang, H. Zhao posted to microarray treetest by maryee on 2006-12-05 22:53:27 as
	The elusive yeast interactome. [My Copy] Genome Biol, Vol. 7, No. 6. (2006) by J. Goll, P. Uetz posted to accelerating_mapping interactome by maryee on 2006-11-21 19:51:26 as along with 3 people eukfn Evangelia chad_davis
	A Crossed Random Effects Model for Unbalanced Data with Applications in Cross-Sectional and Longitudinal Research [My Copy] Journal of Educational Statistics, Vol. 18, No. 4. (1993), pp. 321-349. by Stephen W. Raudenbush posted to mixedeffectsmodel by maryee on 2006-10-25 00:11:34 as
	Learning to predict protein-protein interactions from protein sequences. [My Copy] Bioinformatics, Vol. 19, No. 15. (12 October 2003), pp. 1875-1881. by S. M. Gomez, W. S. Noble, A. Rzhetsky posted to interactome by maryee on 2006-10-18 15:21:14 as along with 4 people grahamc cjeans wilbur Pao-Yang
	Correlated sequence-signatures as markers of protein-protein interaction. [My Copy] J Mol Biol, Vol. 311, No. 4. (24 August 2001), pp. 681-692. by E. Sprinzak, H. Margalit posted to interactome by maryee on 2006-10-17 04:19:38 as along with 10 people behindtherabbit bicko chad_davis dyermd grahamc cjeans lilith wilbur Rhys phoenixzxl
	Pvclust: an R package for assessing the uncertainty in hierarchical clustering [My Copy] Bioinformatics, Vol. 22, No. 12. (15 June 2006), pp. 1540-1542. by Ryota Suzuki, Hidetoshi Shimodaira posted to microarray treetest by maryee on 2006-09-08 18:12:05 as along with 10 people walshtp ltitodem druvus jfr wnpx josepe ghattem elfar quianominorleo briordan
	A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules [My Copy] Science, Vol. 302, No. 5643. (10 October 2003), pp. 249-255. by Joshua M. Stuart, Eran Segal, Daphne Koller, Stuart K. Kim posted to microarray treetest by maryee on 2006-09-08 16:45:30 as along with 24 people and 7 groups sficklin roys thegoose2 cswinburne carlk saket pengchy nolodie jeremymiller tharris dragonrez textoris lfriedl balajis nuke2005 tardigrade opheliav wnpx neveaire macle raylim lp2 karfunkel vertikalist C. elegans / WormBase kdl Biostatistics Computational-Genomics Bioinformatics Neuroscience BTS-PT-AS-CS
	Coexpression Analysis of Human Genes Across Many Microarray Data Sets [My Copy] Genome Research, Vol. 14, No. 6. (June 2004), pp. 1085-1094. by Homin K. Lee, Amy K. Hsu, Jon Sajdak, Jie Qin, Paul Pavlidis posted to microarray treetest by maryee on 2006-09-08 16:43:50 as along with 17 people and 2 groups sficklin cabbagezs cswinburne pengchy jiny gpalidwor giovanni jeremymiller hawkeyehammer grahamc macavity1g raylim sgoetz wilbur jo_davies nedwards dragonrez GeschwindLab Indigene
	A systematic statistical linear modeling approach to oligonucleotide array experiments [My Copy] Mathematical Biosciences, Vol. 176, No. 1. (March 2002), pp. 35-51. by Tzu-Ming Chu, Bruce Weir, Russ Wolfinger posted to microarray treetest by maryee on 2006-09-08 01:10:21 as along with 1 person bertelsen
	Assessing Gene Significance from cDNA Microarray Expression Data via Mixed Models [My Copy] J Comput Biol., Vol. 8, No. 6. (2001), pp. 625-637. by Wolfinger posted to microarray treetest by maryee on 2006-09-08 01:08:27 as
	Application of a priori established gene sets to discover biologically important differential expression in microarray data [My Copy] PNAS, Vol. 102, No. 43. (25 October 2005), pp. 15278-15279. by Andrea Bild, Phillip G. Febbo posted to microarray treetest by maryee on 2006-08-22 06:09:26 as along with 4 people and 1 group antonkratz ealloza jdiggans srp33 BioinfoCIPF
	Linear models and empirical bayes methods for assessing differential expression in microarray experiments. [My Copy] Statistical applications in genetics and molecular biology, Vol. 3, No. 1. (2004) by Gordon K. Smyth posted to microarray by maryee on 2006-07-17 00:56:34 as along with 17 people and 1 group bertelsen jperkins zoex_99 ipark-kaist lwaldron paszkows isimpson Stew ihpark giovenko RMGraze mayercd justescaped ugengma heliopais guhjy talponer Bioinformatics - CRUK
	Use of within-array replicate spots for assessing differential expression in microarray experiments. [My Copy] Bioinformatics (18 January 2005) by Gordon K K. Smyth, Joëlle Michaud, Hamish S S. Scott posted to microarray by maryee on 2006-07-17 00:54:55 as along with 2 people mdimmic Dax42
	Correspondence analysis of microarray time-course data in case-control design. [My Copy] J Biomed Inform, Vol. 37, No. 5. (October 2004), pp. 358-365. by Q. Tan, K. Brusgaard, T. A. Kruse, et al.E. Oakeley, B. Hemmings, H. Beck-Nielsen, L. Hansen, M. Gaster posted to microarray tb by maryee on 2006-07-14 00:17:41 as
	A new closed multiple testing procedure for hierarchical families of hypotheses [My Copy] Journal of Statistical Planning and Inference, Vol. 46, No. 3. (15 August 1995), pp. 265-275. by Dror M. Rom, Burt Holland posted to microarray by maryee on 2006-06-15 01:40:04 as
	The Control of the False Discovery Rate in Multiple Testing under Dependency [My Copy] Annals of Statistics (2001) by Y. Benjamini, D. Yekutieli posted to microarray by maryee on 2006-06-15 01:27:15 as
	Identifying differentially expressed genes using false discovery rate controlling procedures. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 3. (12 February 2003), pp. 368-375. by Anat Reiner, Daniel Yekutieli, Yoav Benjamini posted to microarray by maryee on 2006-06-15 01:25:35 as along with 8 people ericrpaquet olberd zufar bertelsen maximilianh RMGraze talponer shikin
	Markov modelling of immunological and virological states in HIV-1 infected patients. [My Copy] Biom J, Vol. 47, No. 6. (December 2005), pp. 834-846. by E. Mathieu, P. Loup, P. Dellamonica, J. P. Daures posted to hai by maryee on 2006-06-14 20:24:21 as
	Microarray analysis and tumor classification. [My Copy] N Engl J Med, Vol. 354, No. 23. (8 June 2006), pp. 2463-2472. by J. Quackenbush posted to microarray by maryee on 2006-06-14 15:22:26 as along with 3 people and 1 group capitall jeremymiller frohike GeschwindLab
	Clustering microarray gene expression data using weighted Chinese restaurant process. [My Copy] Bioinformatics (9 June 2006) by Zhaohui Qin posted to microarray by maryee on 2006-06-14 15:21:23 as along with 3 people jfr archroad bayes
	Visualization methods for statistical analysis of microarray clusters. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by M. A. Hibbs, N. C. Dirksen, K. Li, O. G. Troyanskaya posted to microarray by maryee on 2006-06-14 15:19:49 as along with 5 people guhjy jfr smbaxtersf waszak ndiaz
	Towards precise classification of cancers based on robust gene functional expression profiles [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by Zheng Guo, Tianwen Zhang, Xia Li, et al.Qi Wang, Jianzhen Xu, Hui Yu, Jing Zhu, Haiyun Wang, Chenguang Wang, Eric Topol, Qing Wang, Shaoqi Rao posted to microarray by maryee on 2006-06-14 15:11:37 as along with 3 people jfr eckart_bindewald macavity1g
	Mathematical modeling of the interrelationship of CD4 lymphocyte count and viral load changes induced by the protease inhibitor indinavir. [My Copy] Antimicrob Agents Chemother, Vol. 42, No. 2. (February 1998), pp. 358-361. by G. L. Drusano, D. S. Stein posted to hai by maryee on 2006-06-13 04:32:04 as
	Cost-effectiveness of screening for HIV in the era of highly active antiretroviral therapy. [My Copy] N Engl J Med, Vol. 352, No. 6. (10 February 2005), pp. 570-585. by G. D. Sanders, A. M. Bayoumi, V. Sundaram, et al.S. P. Bilir, C. P. Neukermans, C. E. Rydzak, L. R. Douglass, L. C. Lazzeroni, M. Holodniy, D. K. Owens posted to hai by maryee on 2006-06-07 18:08:14 as
	Cluster analysis and display of genome-wide expression patterns [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 25. (8 December 1998), pp. 14863-14868. by Michael B. Eisen, Paul T. Spellman, Patrick O. Brown, David Botstein posted to microarray by maryee on 2006-06-07 04:48:26 as along with 34 people and 3 groups antonkratz potatongy drungows colmryan jplatig rsaito Neeperando baldigroup daforerog karinlag ronglais operon Borelli pengchy macowell ggrot miguel textoris okarsligil pcahan1 lfriedl balajis nuke2005 lyongu wnpx nirfriedman dquest karfunkel dps kintoki jo_davies tvdbulck bozdagd roys kdl Bioinformatics BUiGEM
	PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes. [My Copy] Nature genetics, Vol. 34, No. 3. (July 2003), pp. 267-273. by Vamsi K. Mootha, Cecilia M. Lindgren, Karl-Fredrik F. Eriksson, et al.Aravind Subramanian, Smita Sihag, Joseph Lehar, Pere Puigserver, Emma Carlsson, Martin Ridderstråle, Esa Laurila, Nicholas Houstis, Mark J. Daly, Nick Patterson, Jill P. Mesirov, Todd R. Golub, Pablo Tamayo, Bruce Spiegelman, Eric S. Lander, Joel N. Hirschhorn, David Altshuler, Leif C. Groop posted to microarray by maryee on 2006-06-04 01:12:10 as along with 10 people and 2 groups jperkins yaredo ipark-kaist paszkows dragonrez ealloza giovanni shikin magusina heliopais BioinfoCIPF GeschwindLab
	Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550. by Aravind Subramanian, Pablo Tamayo, Vamsi K. Mootha, et al.Sayan Mukherjee, Benjamin L. Ebert, Michael A. Gillette, Amanda Paulovich, Scott L. Pomeroy, Todd R. Golub, Eric S. Lander, Jill P. Mesirov posted to microarray by maryee on 2006-06-04 01:09:12 as along with 44 people and 4 groups miskar giovenko greg dolchan pattersonee mhamidi jperkins zufar ptrobajo antonkratz yaredo tmmurali VGreiff daforerog paszkows ipark-kaist bertelsen ajbattle jessopher askrajiv idonaldson ihpark chrisamiller dragonrez jfr balajis xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet heliopais shikin waghsk roys ellakat srp33 sgoetz AbnerCYH Bioinformatics BioinfoCIPF GeschwindLab Indigene
	Using the Gene Ontology for Microarray Data Mining: A Comparison of Methods and Application to Age Effects in Human Prefrontal Cortex [My Copy] Neurochemical Research, Vol. 29, No. 6. (June 2004) by Paul posted to microarray by maryee on 2006-06-04 01:07:25 as
	A network-based analysis of systemic inflammation in humans [My Copy] Nature, Vol. 437, No. 7061. (13 October 2005), pp. 1032-1037. by Steve E. Calvano, Wenzhong Xiao, Daniel R. Richards, et al.Ramon M. Felciano, Henry V. Baker, Raymond J. Cho, Richard O. Chen, Bernard H. Brownstein, J. Perren Cobb, S. Kevin Tschoeke, Carol Miller-Graziano, Lyle L. Moldawer, Michael N. Mindrinos, Ronald W. Davis, Ronald G. Tompkins, Stephen F. Lowry, Large Scale Collab posted to microarray by maryee on 2006-06-04 00:58:34 as along with 13 people and 1 group yaredo textoris tuck VCKALIA nknii juliajumeau lhonigberg noano grahamc massivemayhem karfunkel beapen guhjy TCR_Signaling
	An integrative genomics approach to the reconstruction of gene networks in segregating populations. [My Copy] Cytogenetic and genome research, Vol. 105, No. 2-4. (2004), pp. 363-374. by J. Zhu, P. Y. Lum, J. Lamb, et al.D. GuhaThakurta, S. W. Edwards, R. Thieringer, J. P. Berger, M. S. Wu, J. Thompson, A. B. Sachs, E. E. Schadt posted to microarray by maryee on 2006-06-04 00:57:51 as along with 4 people biomcgary brant balicea jo_davies
	Oncogenic pathway signatures in human cancers as a guide to targeted therapies [My Copy] Nature, Vol. 439, No. 7074. (06 November 2005), pp. 353-357. by Andrea H. Bild, Guang Yao, Jeffrey T. Chang, et al.Quanli Wang, Anil Potti, Dawn Chasse, Mary-Beth Joshi, David Harpole, Johnathan M. Lancaster, Andrew Berchuck, John A. Olson, Jeffrey R. Marks, Holly K. Dressman, Mike West, Joseph R. Nevins posted to microarray by maryee on 2006-06-04 00:56:25 as along with 15 people bertelsen roys ipark-kaist zufar Yanno guhjy kentsis mfenner ajeffs tuck eckart_bindewald frohike Ao_Li2007 waghsk srp33
	Quantifying the relationship between co-expression, co-regulation and gene function. [My Copy] BMC Bioinformatics, Vol. 5 (25 February 2004) by D. J. Allocco, I. S. Kohane, A. J. Butte posted to microarray by maryee on 2006-06-04 00:54:42 as along with 2 people kittipat gpalidwor
	Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by C. J. Wolfe, I. S. Kohane, A. J. Butte posted to microarray by maryee on 2006-06-04 00:54:05 as along with 3 people balajis srp33 dragonrez
	Discovering statistically significant pathways in expression profiling studies. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 38. (20 September 2005), pp. 13544-13549. by Lu Tian, Steven A. Greenberg, Sek Won W. Kong, Josiah Altschuler, Isaac S. Kohane, Peter J. Park posted to microarray by maryee on 2006-06-04 00:53:18 as along with 11 people and 1 group yaredo VGreiff daforerog ipark-kaist dragonrez ealloza frohike justescaped srp33 giovenko heliopais BioinfoCIPF
	Using functional domain composition and support vector machines for prediction of protein subcellular location. [My Copy] J Biol Chem, Vol. 277, No. 48. (29 November 2002), pp. 45765-45769. by K. C. Chou, Y. D. Cai posted to interactome by maryee on 2006-05-07 19:00:29 as
	Predicting protein-protein interactions from primary structure [My Copy] Bioinformatics, Vol. 17, No. 5. (1 May 2001), pp. 455-460. by Joel R. Bock, David A. Gough posted to interactome by maryee on 2006-05-07 18:51:17 as along with 7 people renatomilani kgutwin joseolucha cjeans Evangelia iris_2001 wilbur
	A protein interaction map of Drosophila melanogaster. [My Copy] Science, Vol. 302, No. 5651. (5 December 2003), pp. 1727-1736. by L. Giot, J. S. Bader, C. Brouwer, et al.A. Chaudhuri, B. Kuang, Y. Li, Y. L. Hao, C. E. Ooi, B. Godwin, E. Vitols, G. Vijayadamodar, P. Pochart, H. Machineni, M. Welsh, Y. Kong, B. Zerhusen, R. Malcolm, Z. Varrone, A. Collis, M. Minto, S. Burgess, L. McDaniel, E. Stimpson, F. Spriggs, J. Williams, K. Neurath, N. Ioime, M. Agee, E. Voss, K. Furtak, R. Renzulli, N. Aanensen, S. Carrolla, E. Bickelhaupt, Y. Lazovatsky, A. DaSilva, J. Zhong, C. A. Stanyon, R. L. Finley, K. P. White, M. Braverman, T. Jarvie, S. Gold, M. Leach, J. Knight, R. A. Shimkets, M. P. McKenna, J. Chant, J. M. Rothberg posted to no-tag by maryee on 2006-05-02 04:22:01 as along with 16 people and 2 groups mgomes semin diamantis dragonrez shivaram lfriedl nuke2005 lyongu sesejun xico memming eukfn csanford antonkratz carlk cerca kdl WetBiology
	A Drosophila protein-interaction map centered on cell-cycle regulators. [My Copy] Genome biology, Vol. 5, No. 12. (2004) by Clement A. Stanyon, Guozhen Liu, Bernardo A. Mangiola, et al.Nishi Patel, Loic Giot, Bing Kuang, Huamei Zhang, Jinhui Zhong, Russell L. Finley posted to no-tag by maryee on 2006-05-02 04:20:08 as along with 4 people semin sesejun eukfn csanford
	Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets. [My Copy] Nature Genetics, Vol. 38, No. 3., pp. 285-293. by Gandhi posted to no-tag by maryee on 2006-04-26 00:21:53 as along with 1 person grahamc
	C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression. [My Copy] Nat Genet, Vol. 34, No. 1. (May 2003), pp. 35-41. by J. Reboul, P. Vaglio, J. F. Rual, et al.P. Lamesch, M. Martinez, C. M. Armstrong, S. Li, L. Jacotot, N. Bertin, R. Janky, T. Moore, J. R. Hudson, J. L. Hartley, M. A. Brasch, J. Vandenhaute, S. Boulton, G. A. Endress, S. Jenna, E. Chevet, V. Papasotiropoulos, P. P. Tolias, J. Ptacek, M. Snyder, R. Huang, M. R. Chance, H. Lee, L. Doucette-Stamm, D. E. Hill, M. Vidal posted to no-tag by maryee on 2006-04-25 22:30:47 as along with 3 people and 2 groups thegoose2 tharris kaspermunch C. elegans / WormBase Bioinformatics
	WormBase: a comprehensive data resource for Caenorhabditis biology and genomics. [My Copy] Nucleic acids research, Vol. 33, No. Database issue. (1 January 2005) by Nansheng Chen, Todd W. Harris, Igor Antoshechkin, et al.Carol Bastiani, Tamberlyn Bieri, Darin Blasiar, Keith Bradnam, Payan Canaran, Juancarlos Chan, Chao-Kung K. Chen, Wen J. Chen, Fiona Cunningham, Paul Davis, Eimear Kenny, Ranjana Kishore, Daniel Lawson, Raymond Lee, Hans-Michael M. Muller, Cecilia Nakamura, Shraddha Pai, Philip Ozersky, Andrei Petcherski, Anthony Rogers, Aniko Sabo, Erich M. Schwarz, Kimberly Van Auken, Qinghua Wang, Richard Durbin, John Spieth, Paul W. Sternberg, Lincoln D. Stein posted to no-tag by maryee on 2006-04-25 22:23:06 as along with 7 people biomcgary thegoose2 paszkows rklancer nuke2005 GustavoLacerda tharris
	A Map of the Interactome Network of the Metazoan C. elegans [My Copy] Science, Vol. 303, No. 5657. (23 January 2004), pp. 540-543. by Siming Li, Christopher M. Armstrong, Nicolas Bertin, et al.Hui Ge, Stuart Milstein, Mike Boxem, Pierre-Olivier Vidalain, Jing-Dong J. Han, Alban Chesneau, Tong Hao, Debra S. Goldberg, Ning Li, Monica Martinez, Jean-Francois Rual, Philippe Lamesch, Lai Xu, Muneesh Tewari, Sharyl L. Wong, Lan V. Zhang, Gabriel F. Berriz, Laurent Jacotot, Philippe Vaglio, Jerome Reboul, Tomoko Hirozane-Kishikawa, Qianru Li, Harrison W. Gabel, Ahmed Elewa, Bridget Baumgartner, Debra J. Rose, Haiyuan Yu, Stephanie Bosak, Reynaldo Sequerra, Andrew Fraser, Susan E. Mango, William M. Saxton, Susan Strome, Sander van den Heuvel, Fabio Piano, Jean Vandenhaute, Claude Sardet, Mark Gerstein, Lynn Doucette-Stamm, Kristin C. Gunsalus, Wade J. Harper, Michael E. Cusick, Frederick P. Roth, David E. Hill, Marc Vidal posted to no-tag by maryee on 2006-04-25 22:16:14 as
	FDI and the Capital Intensity of Dirty Sectors: A Missing Piece of the Pollution Haven Puzzle [My Copy] Review of Development Economics, Vol. 9, No. 4. (November 2005), pp. 530-548. by Matthew A. Cole, Robert J. Elliott posted to no-tag by maryee on 2006-04-12 14:52:19 as
	Statistical properties of the volatility of price fluctuations [My Copy] Physical Review Letters, Vol. 60, No. 2. by Yanhui posted to finance volatility by maryee on 2006-03-20 20:19:55 as
	CDD: a curated Entrez database of conserved domain alignments. [My Copy] Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 383-387. by A. Marchler-Bauer, J. B. Anderson, C. DeWeese-Scott, et al.N. D. Fedorova, L. Y. Geer, S. He, D. I. Hurwitz, J. D. Jackson, A. R. Jacobs, C. J. Lanczycki, C. A. Liebert, C. Liu, T. Madej, G. H. Marchler, R. Mazumder, A. N. Nikolskaya, A. R. Panchenko, B. S. Rao, B. A. Shoemaker, V. Simonyan, J. S. Song, P. A. Thiessen, S. Vasudevan, Y. Wang, R. A. Yamashita, J. J. Yin, S. H. Bryant posted to accelerating_mapping by maryee on 2006-03-19 17:05:31 as along with 4 people balajis cjeans jteyra gulkur
	What do we learn from high-throughput protein interaction data? [My Copy] Expert Rev Proteomics, Vol. 1, No. 1. (June 2004), pp. 111-121. by B. Titz, M. Schlesner, P. Uetz posted to interactome by maryee on 2006-03-04 23:55:21 as along with 3 people kuhn grahamc wilbur
	Interactome: gateway into systems biology. [My Copy] Hum Mol Genet, Vol. 14 Spec No. 2 (15 October 2005) by M. E. Cusick, N. Klitgord, M. Vidal, D. E. Hill posted to interactome by maryee on 2006-02-17 16:38:24 as along with 8 people and 2 groups kuhn wnpx gandhih jdiggans braingrind grahamc dejori wilbur ic4 generif_paper
	Intronic sequences flanking alternatively spliced exons are conserved between human and mouse. [My Copy] Genome Res, Vol. 13, No. 7. (July 2003), pp. 1631-1637. by R. Sorek, G. Ast posted to no-tag by maryee on 2006-02-14 04:56:25 as along with 1 person radek
	Conserved sequence elements associated with exon skipping. [My Copy] Nucleic Acids Res, Vol. 31, No. 7. (1 April 2003), pp. 1974-1983. by E. Miriami, H. Margalit, R. Sperling posted to rna splicing by maryee on 2006-02-13 22:37:30 as