maryee's library 78 articles Export

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	Yeast two-hybrid contributions to interactome mapping [My Copy] Current Opinion in Biotechnology In Protein technologies, Vol. 17, No. 4. (August 2006), pp. 387-393. by Jodi R. Parrish, Keith D. Gulyas, Jr Finley posted to accelerating_mapping interactome by maryee on 2007-01-04 17:14:50 as along with 6 people and 2 groups dchughes eukfn nm grahamc cmor bethbromley G4ID Genetics-of-Gambling
	Intronic sequences flanking alternatively spliced exons are conserved between human and mouse. [My Copy] Genome Res, Vol. 13, No. 7. (July 2003), pp. 1631-1637. by R. Sorek, G. Ast posted to no-tag by maryee on 2006-02-14 04:56:25 as along with 1 person radek
	Inferring protein interactions from experimental data by association probabilistic method. [My Copy] Proteins (4 January 2006) by Luonan Chen, Ling-Yun Y. Wu, Yong Wang, Xiang-Sun S. Zhang posted to interactome by maryee on 2006-02-04 22:04:35 as along with 1 person phoenixzxl
	DrugBank: a comprehensive resource for in silico drug discovery and exploration [My Copy] Nucl. Acids Res., Vol. 34, No. suppl_1. (1 January 2006), pp. D668-672. by David S. Wishart, Craig Knox, An C. Guo, et al.Savita Shrivastava, Murtaza Hassanali, Paul Stothard, Zhan Chang, Jennifer Woolsey posted to no-tag by maryee on 2006-01-11 07:44:56 as along with 11 people and 2 groups sm-rush bertelsen wenhui yaredo dansullivanblk kuhn sangeetha madhadron jdiggans massivemayhem elvinado Bioinformatics insilicodrug
	Assessing the limits of genomic data integration for predicting protein networks [My Copy] Genome Research, Vol. 15, No. 7. (July 2005), pp. 945-953. by Long J. Lu, Yu Xia, Alberto Paccanaro, Haiyuan Yu, Mark Gerstein posted to no-tag by maryee on 2005-12-19 21:14:39 as along with 17 people and 3 groups ashishanand paccanarolab jaimie aelef okarsligil lfriedl balajis opheliav wnpx mbeautru eukfn grahamc nedwards brianb iris_2001 carlk phoenixzxl Paccanaro Lab kdl Bioinformatics
	Probabilistic prediction of protein-protein interactions from the protein sequences. [My Copy] Comput Biol Med (24 October 2005) by Arunkumar Chinnasamy, Ankush Mittal, Wing-Kin K. Sung posted to no-tag by maryee on 2005-12-19 21:08:58 as
	Assessing reliability of gene clusters from gene expression data. [My Copy] Funct Integr Genomics, Vol. 1, No. 3. (November 2000), pp. 156-173. by K. Zhang, H. Zhao posted to microarray treetest by maryee on 2006-12-05 22:53:27 as
	Correspondence analysis of microarray time-course data in case-control design. [My Copy] J Biomed Inform, Vol. 37, No. 5. (October 2004), pp. 358-365. by Q. Tan, K. Brusgaard, T. A. Kruse, et al.E. Oakeley, B. Hemmings, H. Beck-Nielsen, L. Hansen, M. Gaster posted to microarray tb by maryee on 2006-07-14 00:17:41 as
	Interactome: gateway into systems biology. [My Copy] Hum Mol Genet, Vol. 14 Spec No. 2 (15 October 2005) by M. E. Cusick, N. Klitgord, M. Vidal, D. E. Hill posted to interactome by maryee on 2006-02-17 16:38:24 as along with 8 people and 2 groups kuhn wnpx gandhih jdiggans braingrind grahamc dejori wilbur ic4 generif_paper
	Mechanisms of alternative pre-messenger RNA splicing. [My Copy] Annual review of biochemistry, Vol. 72 (2003), pp. 291-336. by Douglas L. Black posted to rna splicing by maryee on 2006-02-13 16:22:57 as along with 5 people and 1 group rshe jknabe Cortel xico mimulus_99 WetBiology
	Vertebrate MicroRNA Genes [My Copy] Science, Vol. 299, No. 5612. (07 March 2003), 1540. by Lee P. Lim, Margaret E. Glasner, Soraya Yekta, Christopher B. Burge, David P. Bartel posted to rna by maryee on 2006-02-13 15:13:28 as along with 6 people and 1 group reyez heliopais martin-novak cassj akiezun eskay microRNA
	Evidence for the regulation of alternative splicing via complementary DNA sequence repeats. [My Copy] Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1358-1364. by Y. Lian, H. R. Garner posted to rna splicing by maryee on 2006-02-13 14:13:06 as
	Conserved patterns of protein interaction in multiple species. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 6. (8 February 2005), pp. 1974-1979. by Roded Sharan, Silpa Suthram, Ryan M. Kelley, et al.Tanja Kuhn, Scott McCuine, Peter Uetz, Taylor Sittler, Richard M. Karp, Trey Ideker posted to no-tag by maryee on 2006-02-13 03:34:29 as along with 18 people and 2 groups chica kiekyon thegoose2 robfsouza carlk tharris jiny sza dragonrez okarsligil balajis nuke2005 gurkanbebek koller cjeans iris_2001 maralena mdstobbe C. elegans / WormBase Bioinformatics
	HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms. [My Copy] BMC bioinformatics, Vol. 6 Suppl 4 (1 December 2005) by Maria Persico, Arnaud Ceol, Caius Gavrila, Robert Hoffmann, Arnaldo Florio, Gianni Cesareni posted to no-tag by maryee on 2006-02-03 17:20:18 as along with 4 people aceol Scis0000002 cerca mariap3636
	Quantitative detection of increasing HIV type 1 antibodies after seroconversion: a simple assay for detecting recent HIV infection and estimating incidence. [My Copy] AIDS Res Hum Retroviruses, Vol. 18, No. 4. (1 March 2002), pp. 295-307. by B. S. Parekh, M. S. Kennedy, T. Dobbs, et al.C. P. Pau, R. Byers, T. Green, D. J. Hu, S. Vanichseni, N. L. Young, K. Choopanya, T. D. Mastro, J. S. McDougal posted to bed cdc by maryee on 2006-01-20 20:06:16 as
	Do you do text? [My Copy] Bioinformatics (29 September 2005) by Christian Blaschke, Alexander Yeh, Evelyn Camon, et al.Marc Colosimo, Rolf Apweiler, Lynette Hirschman, Alfonso Valencia posted to no-tag by maryee on 2006-01-05 23:05:47 as along with 2 people and 3 groups yas marcius T_lab BioinfoCIPF SGU-CIPF
	Predicting Functional Gene Links from Phylogenetic-Statistical Analyses of Whole Genomes [My Copy] PLoS Comput Biol, Vol. 1, No. 1. (24 June 2005), e3. by Daniel Barker, Mark Pagel posted to no-tag by maryee on 2005-12-19 21:16:50 as along with 10 people and 1 group jperkins biomcgary skembel Robinder rw294 balajis arunyan bartleby pradiptaray rvosa iSEEM
	Development of Human Protein Reference Database as an Initial Platform for Approaching Systems Biology in Humans [My Copy] Genome Research, Vol. 13, No. 10. (October 2003), pp. 2363-2371. by Suraj Peri, J. Daniel Navarro, Ramars Amanchy, et al.Troels Z. Kristiansen, Chandra K. Jonnalagadda, Vineeth Surendranath, Vidya Niranjan, Babylakshmi Muthusamy, T. K. B. Gandhi, Mads Gronborg, Nieves Ibarrola, Nandan Deshpande, K. Shanker, H. N. Shivashankar, B. P. Rashmi, M. A. Ramya, Zhixing Zhao, K. N. Chandrika, N. Padma, H. C. Harsha, A. J. Yatish, M. P. Kavitha, Minal Menezes, Dipanwita R. Choudhury, Shubha Suresh, Neelanjana Ghosh, R. Saravana, Sreenath Chandran, Subhalakshmi Krishna, Mary Joy, Sanjeev K. Anand, V. Madavan, Ansamma Joseph, Guang W. Wong, William P. Schiemann, Stefan N. Constantinescu, Lily Huang, Roya Khosravi-Far, Hanno Steen, Muneesh Tewari, Saghi Ghaffari, Gerard C. Blobe, Chi V. Dang, Joe G. N. Garcia, Jonathan Pevsner, Ole N. Jensen, Peter Roepstorff, Krishna S. Deshpande, Arul M. Chinnaiyan, Ada Hamosh, Aravinda Chakravarti, Akhilesh Pandey posted to no-tag by maryee on 2005-12-19 20:35:30 as along with 6 people and 1 group marti semin jeremymiller aelef miguel bundschu generif_paper
	What are cross-validation and bootstrapping? [My Copy] posted to no-tag by maryee on 2005-11-16 19:46:11 as along with 1 person deysandeep
	Conserved sequence elements associated with exon skipping. [My Copy] Nucleic Acids Res, Vol. 31, No. 7. (1 April 2003), pp. 1974-1983. by E. Miriami, H. Margalit, R. Sperling posted to rna splicing by maryee on 2006-02-13 22:37:30 as
	hnRNP A1 controls HIV-1 mRNA splicing through cooperative binding to intron and exon splicing silencers in the context of a conserved secondary structure. [My Copy] RNA, Vol. 8, No. 11. (November 2002), pp. 1401-1415. by C. K. Damgaard, T. O. Tange, J. Kjems posted to rna splicing by maryee on 2006-02-13 22:19:37 as
	Influence of RNA Secondary Structure on the Pre-mRNA Splicing Process [My Copy] Mol. Cell. Biol., Vol. 24, No. 24. (15 December 2004), pp. 10505-10514. by Emanuele Buratti, Francisco E. Baralle posted to rna splicing by maryee on 2006-02-13 21:52:28 as along with 1 person raylim
	Small regulatory RNAs in mammals. [My Copy] Hum Mol Genet, Vol. 14 Spec No 1 (15 April 2005) by J. S. Mattick, I. V. Makunin posted to rna by maryee on 2006-02-13 20:04:24 as along with 3 people myrtilus tardigrade mtagaya
	Prediction of mammalian microRNA targets. [My Copy] Cell, Vol. 115, No. 7. (26 December 2003), pp. 787-798. by B. P. Lewis, I. H. Shih, M. W. Jones-Rhoades, D. P. Bartel, C. B. Burge posted to mirna rna by maryee on 2006-02-13 18:46:02 as along with 8 people and 2 groups giovenko jfr eckart_bindewald mortenlindow kt arcticrasta mtagaya akiezun Bioinformatics microRNA
	Conserved Seed Pairing, Often Flanked by Adenosines, Indicates that Thousands of Human Genes are MicroRNA Targets [My Copy] Cell, Vol. 120, No. 1. (14 January 2005), pp. 15-20. by Benjamin P. Lewis, Christopher B. Burge, David P. Bartel posted to mirna rna by maryee on 2006-02-13 18:44:35 as along with 14 people and 3 groups danaiancu sterovetta ronglais pengchy jfr marcius eckart_bindewald tardigrade mortenlindow andersbj mtagaya heliopais Alexander_Kanitz elfar microRNA BioinfoCIPF SGU-CIPF
	MicroRNAs: genomics, biogenesis, mechanism, and function. [My Copy] Cell, Vol. 116, No. 2. (23 January 2004), pp. 281-297. by David P. Bartel posted to rna by maryee on 2006-02-13 18:42:06 as along with 6 people and 5 groups catcremona heliopais miguel marcius mtagaya shizhao microRNA Wikipedia Bioinformatics BioinfoCIPF SGU-CIPF
	The small RNA world. [My Copy] J Cell Sci, Vol. 116, No. Pt 23. (1 December 2003), pp. 4689-4693. by E. J. Finnegan, M. A. Matzke posted to rna by maryee on 2006-02-13 15:18:55 as along with 1 person icejiafu
	Inferring domain-domain interactions from protein-protein interactions. [My Copy] Genome research, Vol. 12, No. 10. (October 2002), pp. 1540-1548. by Minghua Deng, Shipra Mehta, Fengzhu Sun, Ting Chen posted to no-tag by maryee on 2006-02-02 20:56:03 as along with 7 people opheliav wnpx neils Pao-Yang phoenixzxl carlk zdai
	The elusive yeast interactome. [My Copy] Genome Biol, Vol. 7, No. 6. (2006) by J. Goll, P. Uetz posted to accelerating_mapping interactome by maryee on 2006-11-21 19:51:26 as along with 3 people eukfn Evangelia chad_davis
	A Crossed Random Effects Model for Unbalanced Data with Applications in Cross-Sectional and Longitudinal Research [My Copy] Journal of Educational Statistics, Vol. 18, No. 4. (1993), pp. 321-349. by Stephen W. Raudenbush posted to mixedeffectsmodel by maryee on 2006-10-25 00:11:34 as
	Learning to predict protein-protein interactions from protein sequences. [My Copy] Bioinformatics, Vol. 19, No. 15. (12 October 2003), pp. 1875-1881. by S. M. Gomez, W. S. Noble, A. Rzhetsky posted to interactome by maryee on 2006-10-18 15:21:14 as along with 4 people grahamc cjeans wilbur Pao-Yang
	Correlated sequence-signatures as markers of protein-protein interaction. [My Copy] J Mol Biol, Vol. 311, No. 4. (24 August 2001), pp. 681-692. by E. Sprinzak, H. Margalit posted to interactome by maryee on 2006-10-17 04:19:38 as along with 10 people behindtherabbit bicko chad_davis dyermd grahamc cjeans lilith wilbur Rhys phoenixzxl
	Pvclust: an R package for assessing the uncertainty in hierarchical clustering [My Copy] Bioinformatics, Vol. 22, No. 12. (15 June 2006), pp. 1540-1542. by Ryota Suzuki, Hidetoshi Shimodaira posted to microarray treetest by maryee on 2006-09-08 18:12:05 as along with 10 people walshtp ltitodem druvus jfr wnpx josepe ghattem elfar quianominorleo briordan
	A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules [My Copy] Science, Vol. 302, No. 5643. (10 October 2003), pp. 249-255. by Joshua M. Stuart, Eran Segal, Daphne Koller, Stuart K. Kim posted to microarray treetest by maryee on 2006-09-08 16:45:30 as along with 24 people and 7 groups sficklin roys thegoose2 cswinburne carlk saket pengchy nolodie jeremymiller tharris dragonrez textoris lfriedl balajis nuke2005 tardigrade opheliav wnpx neveaire macle raylim lp2 karfunkel vertikalist C. elegans / WormBase kdl Biostatistics Computational-Genomics Bioinformatics Neuroscience BTS-PT-AS-CS
	Coexpression Analysis of Human Genes Across Many Microarray Data Sets [My Copy] Genome Research, Vol. 14, No. 6. (June 2004), pp. 1085-1094. by Homin K. Lee, Amy K. Hsu, Jon Sajdak, Jie Qin, Paul Pavlidis posted to microarray treetest by maryee on 2006-09-08 16:43:50 as along with 17 people and 2 groups sficklin cabbagezs cswinburne pengchy jiny gpalidwor giovanni jeremymiller hawkeyehammer grahamc macavity1g raylim sgoetz wilbur jo_davies nedwards dragonrez GeschwindLab Indigene
	A systematic statistical linear modeling approach to oligonucleotide array experiments [My Copy] Mathematical Biosciences, Vol. 176, No. 1. (March 2002), pp. 35-51. by Tzu-Ming Chu, Bruce Weir, Russ Wolfinger posted to microarray treetest by maryee on 2006-09-08 01:10:21 as along with 1 person bertelsen
	Assessing Gene Significance from cDNA Microarray Expression Data via Mixed Models [My Copy] J Comput Biol., Vol. 8, No. 6. (2001), pp. 625-637. by Wolfinger posted to microarray treetest by maryee on 2006-09-08 01:08:27 as
	Application of a priori established gene sets to discover biologically important differential expression in microarray data [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 43. (25 October 2005), pp. 15278-15279. by Andrea Bild, Phillip G. Febbo posted to microarray treetest by maryee on 2006-08-22 06:09:26 as along with 5 people and 1 group bertelsen antonkratz ealloza jdiggans srp33 BioinfoCIPF
	Linear models and empirical bayes methods for assessing differential expression in microarray experiments. [My Copy] Statistical applications in genetics and molecular biology, Vol. 3, No. 1. (2004) by Gordon K. Smyth posted to microarray by maryee on 2006-07-17 00:56:34 as along with 19 people and 1 group schwalb shikin bertelsen jperkins zoex_99 ipark-kaist lwaldron paszkows isimpson Stew ihpark giovenko RMGraze mayercd justescaped ugengma heliopais guhjy talponer Bioinformatics - CRUK
	Use of within-array replicate spots for assessing differential expression in microarray experiments. [My Copy] Bioinformatics (18 January 2005) by Gordon K K. Smyth, Joëlle Michaud, Hamish S S. Scott posted to microarray by maryee on 2006-07-17 00:54:55 as along with 2 people mdimmic Dax42
	A new closed multiple testing procedure for hierarchical families of hypotheses [My Copy] Journal of Statistical Planning and Inference, Vol. 46, No. 3. (15 August 1995), pp. 265-275. by Dror M. Rom, Burt Holland posted to microarray by maryee on 2006-06-15 01:40:04 as
	The Control of the False Discovery Rate in Multiple Testing under Dependency [My Copy] Annals of Statistics (2001) by Y. Benjamini, D. Yekutieli posted to microarray by maryee on 2006-06-15 01:27:15 as
	Identifying differentially expressed genes using false discovery rate controlling procedures. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 3. (12 February 2003), pp. 368-375. by Anat Reiner, Daniel Yekutieli, Yoav Benjamini posted to microarray by maryee on 2006-06-15 01:25:35 as along with 8 people ericrpaquet olberd zufar bertelsen maximilianh RMGraze talponer shikin
	Markov modelling of immunological and virological states in HIV-1 infected patients. [My Copy] Biom J, Vol. 47, No. 6. (December 2005), pp. 834-846. by E. Mathieu, P. Loup, P. Dellamonica, J. P. Daures posted to hai by maryee on 2006-06-14 20:24:21 as
	Microarray analysis and tumor classification. [My Copy] N Engl J Med, Vol. 354, No. 23. (8 June 2006), pp. 2463-2472. by J. Quackenbush posted to microarray by maryee on 2006-06-14 15:22:26 as along with 3 people and 1 group capitall jeremymiller frohike GeschwindLab
	Clustering microarray gene expression data using weighted Chinese restaurant process. [My Copy] Bioinformatics (9 June 2006) by Zhaohui Qin posted to microarray by maryee on 2006-06-14 15:21:23 as along with 3 people jfr archroad bayes
	Visualization methods for statistical analysis of microarray clusters. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by M. A. Hibbs, N. C. Dirksen, K. Li, O. G. Troyanskaya posted to microarray by maryee on 2006-06-14 15:19:49 as along with 5 people guhjy jfr smbaxtersf waszak ndiaz
	Towards precise classification of cancers based on robust gene functional expression profiles [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by Zheng Guo, Tianwen Zhang, Xia Li, et al.Qi Wang, Jianzhen Xu, Hui Yu, Jing Zhu, Haiyun Wang, Chenguang Wang, Eric Topol, Qing Wang, Shaoqi Rao posted to microarray by maryee on 2006-06-14 15:11:37 as along with 3 people jfr eckart_bindewald macavity1g
	Mathematical modeling of the interrelationship of CD4 lymphocyte count and viral load changes induced by the protease inhibitor indinavir. [My Copy] Antimicrob Agents Chemother, Vol. 42, No. 2. (February 1998), pp. 358-361. by G. L. Drusano, D. S. Stein posted to hai by maryee on 2006-06-13 04:32:04 as
	Cost-effectiveness of screening for HIV in the era of highly active antiretroviral therapy. [My Copy] N Engl J Med, Vol. 352, No. 6. (10 February 2005), pp. 570-585. by G. D. Sanders, A. M. Bayoumi, V. Sundaram, et al.S. P. Bilir, C. P. Neukermans, C. E. Rydzak, L. R. Douglass, L. C. Lazzeroni, M. Holodniy, D. K. Owens posted to hai by maryee on 2006-06-07 18:08:14 as