massivemayhem's protein-ligand [29 articles] Export Sort

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	Position Specific Interaction Dependent Scoring Technique for Virtual Screening Based on Weighted Protein−Ligand Interaction Fingerprint Profiles [My Copy] Journal of Chemical Information and Modeling, Vol. 49, No. 5. (22 May 2009), pp. 1185-1192. by Ravi K. Nandigam, Sangtae Kim, Juswinder Singh, Claudio Chuaqui posted to clustering protein-ligand sift by massivemayhem on 2009-05-08 09:57:53 as along with 3 people ucbcjbm bio_dataminer sschurer
	Kinase inhibitors and the case for CH..O hydrogen bonds in protein-ligand binding [My Copy] Proteins: Structure, Function, and Genetics, Vol. 49, No. 4. (2002), pp. 567-576. by Albert C. Pierce, Kathryn L. Sandretto, Guy W. Bemis posted to hydrogen-bonding protein-ligand weak-hbonds by massivemayhem on 2009-04-30 16:09:44 as
	Hydrogen Bonding and π-Stacking: How Reliable are Force Fields? A Critical Evaluation of Force Field Descriptions of Nonbonded Interactions [My Copy] Journal of Chemical Information and Modeling, Vol. 49, No. 4. (27 April 2009), pp. 944-955. by Robert S. Paton, Jonathan M. Goodman posted to force-field protein-ligand by massivemayhem on 2009-04-01 15:10:24 as along with 2 people middledomain carlosjavierna
	CREDO: A Protein-Ligand Interaction Database for Drug Discovery [My Copy] Chemical Biology & Drug Design, Vol. 73, No. 2. (February 2009), pp. 157-167. by Adrian Schreyer, Tom Blundell posted to protein-ligand by massivemayhem on 2009-01-28 11:02:20 as along with 7 people ubcg08l mijam richardbickerton pansapiens bicko nanonan higueruelo
	Ligand-protein database: linking protein-ligand complex structures to binding data. [My Copy] J Med Chem, Vol. 44, No. 22. (25 October 2001), pp. 3592-3598. by O. Roche, R. Kiyama, C. L. Brooks posted to database protein-ligand by massivemayhem on 2008-06-11 13:27:07 as along with 2 people nickolay blackbart
	Automated analysis of interatomic contacts in proteins [My Copy] Bioinformatics, Vol. 15, No. 4. (1 April 1999), pp. 327-332. by V. Sobolev, A. Sorokine, J. Prilusky, E. E. Abola, M. Edelman posted to database protein-ligand by massivemayhem on 2008-06-11 13:17:42 as along with 3 people dfdong bicko nickolay
	A searchable database for comparing protein-ligand binding sites for the analysis of structure-function relationships. [My Copy] J Chem Inf Model, Vol. 46, No. 2. (r 2006), pp. 736-742. by N. D. Gold, R. M. Jackson posted to binding-site protein-ligand by massivemayhem on 2008-06-11 13:15:21 as along with 4 people and 1 group medic0747 caporaso blackbart reyez biomedical-nlp
	Structural interaction fingerprint (SIFt): a novel method for analyzing three-dimensional protein-ligand binding interactions. [My Copy] J Med Chem, Vol. 47, No. 2. (15 January 2004), pp. 337-344. by Z. Deng, C. Chuaqui, J. Singh posted to protein-ligand sift by massivemayhem on 2008-06-11 13:13:34 as along with 4 people and 2 groups bio_dataminer ubcg08l apostola sangeetha Bioinformatics insilicodrug
	PDBcal: a comprehensive dataset for receptor-ligand interactions with three-dimensional structures and binding thermodynamics from isothermal titration calorimetry. [My Copy] Chemical biology & drug design, Vol. 71, No. 6. (June 2008), pp. 529-532. by L. Li, J. J. Dantzer, J. Nowacki, B. J. O'Callaghan, S. O. Meroueh posted to binding-affinity protein-ligand by massivemayhem on 2008-05-22 10:01:46 as along with 3 people flbarroso higueruelo kintoki
	The use of protein-ligand interaction fingerprints in docking. [My Copy] Current opinion in drug discovery & development, Vol. 11, No. 3. (May 2008), pp. 356-364. by S. C. Brewerton posted to docking protein-ligand by massivemayhem on 2008-05-06 14:01:00 as along with 3 people flbarroso richardbickerton higueruelo
	Method for comparing the structures of protein ligand-binding sites and application for predicting protein-drug interactions [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Ryoichi Minai, Yo Matsuo, Hiroyuki Onuki, Hiroshi Hirota posted to binding-site database prediction protein-drug protein-ligand by massivemayhem on 2008-01-24 12:06:30 as along with 6 people reyez ramensky tjimenez jteyra mingzhi higueruelo
	Just add water! The effect of water on the specificity of protein-ligand binding sites and its potential application to drug design [My Copy] Chem Biol, Vol. 3, No. 12. (Dec 1996), pp. 973-980. by J. E. Ladbury posted to drug-design protein-ligand water by massivemayhem on 2008-01-18 13:30:57 as
	LIGAND: database of chemical compounds and reactions in biological pathways. [My Copy] Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 402-404. by S. Goto, Y. Okuno, M. Hattori, T. Nishioka, M. Kanehisa posted to database pathways protein-ligand by massivemayhem on 2008-01-18 10:12:36 as along with 7 people medic0747 alexg blackbart koerner dagmar shung sim82
	Het-PDB Navi.: A Database for Protein-Small Molecule Interactions [My Copy] J Biochem (Tokyo), Vol. 135, No. 1. (1 January 2004), pp. 79-84. by Akihiro Yamaguchi, Kei Iida, Nobuaki Matsui, Shirou Tomoda, Kei Yura, Mitiko Go posted to database protein-ligand by massivemayhem on 2008-01-18 10:11:28 as along with 1 person blackbart
	Relibase: design and development of a database for comprehensive analysis of protein-ligand interactions. [My Copy] J Mol Biol, Vol. 326, No. 2. (14 February 2003), pp. 607-620. by M. Hendlich, A. Bergner, J. Günther, G. Klebe posted to database protein-ligand by massivemayhem on 2008-01-18 10:10:31 as along with 2 people nickolay blackbart
	PDB-Ligand: a ligand database based on PDB for the automated and customized classification of ligand-binding structures. [My Copy] Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005) by J. M. Shin, D. H. Cho posted to database protein-ligand by massivemayhem on 2008-01-18 10:09:22 as
	Binding MOAD, a high-quality protein-ligand database. [My Copy] Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008) by M. L. Benson, R. D. Smith, N. A. Khazanov, et al.B. Dimcheff, J. Beaver, P. Dresslar, J. Nerothin, H. A. Carlson posted to binding-affinity database protein-ligand by massivemayhem on 2008-01-18 10:08:30 as along with 6 people medic0747 pauldobson reyez nickolay higueruelo guhjy
	AffinDB: a freely accessible database of affinities for protein-ligand complexes from the PDB. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006), pp. 522-526. by P. Block, C. A. Sotriffer, I. Dramburg, G. Klebe posted to binding-affinity database protein-ligand by massivemayhem on 2008-01-18 10:07:06 as
	Setting up a large set of protein-ligand PDB complexes for the development and validation of knowledge-based docking algorithms. [My Copy] BMC bioinformatics, Vol. 8 (25 August 2007), 310. by L. A. Diago, P. Morell, L. Aguilera, E. Moreno posted to database protein-ligand by massivemayhem on 2008-01-09 18:16:15 as along with 3 people mijogiffin flbarroso mdimmic
	STITCH: interaction networks of chemicals and proteins. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (11 January 2008), pp. 684-688. by Michael Kuhn, Christian von Mering, Monica Campillos, Lars, Peer Bork posted to database networks protein-ligand by massivemayhem on 2008-01-09 10:14:20 as along with 10 people and 1 group richardbickerton medic0747 mitko Cortel guhjy balicea bootsy sobolevnrm larsjuhljensen higueruelo baker-group
	Protein Ligand Database (PLD): additional understanding of the nature and specificity of protein-ligand complexes [My Copy] Bioinformatics, Vol. 19, No. 14. (22 September 2003), pp. 1856-1857. by Dushyanthan Puvanendrampillai, John B. Mitchell posted to database protein-ligand by massivemayhem on 2008-01-08 13:57:10 as along with 1 person nickolay
	Comparison of protein active site structures for functional annotation of proteins and drug design [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 65, No. 1. (2006), pp. 124-135. by Robert Powers, Jennifer C. Copeland, Katherine Germer, Kelly A. Mercier, Viswanathan Ramanathan, Peter Revesz posted to database protein-ligand by massivemayhem on 2007-12-04 11:26:50 as along with 2 people barmak7282 conkymacro
	PDBLIG: Classification of Small Molecular Protein Binding in the Protein Data Bank [My Copy] J. Med. Chem., Vol. 47, No. 15. (15 July 2004), pp. 3807-3816. by A. J. Chalk, C. L. Worth, J. P. Overington, A. W. E. Chan posted to protein-ligand by massivemayhem on 2007-11-30 12:14:59 as along with 2 people nickolay higueruelo
	Cognate Ligand Domain Mapping for Enzymes. [My Copy] J Mol Biol (20 September 2006) by Matthew Bashton, Irene Nobeli, Janet M M. Thornton posted to cognate-ligand database protein-ligand by massivemayhem on 2007-11-30 10:30:12 as along with 3 people drastic cdallett grottenolm
	MSDsite: A database search and retrieval system for the analysis and viewing of bound ligands and active sites [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 58, No. 1. (2005), pp. 190-199. by Adel Golovin, Dimitris Dimitropoulos, Tom Oldfield, Abdelkrim Rachedi, Kim Henrick posted to database protein-ligand by massivemayhem on 2007-06-20 15:08:51 as along with 2 people and 1 group nickolay caporaso biomedical-nlp
	Prediction of Protein-Ligand Interactions. Docking and Scoring: Successes and Gaps. [My Copy] J Med Chem, Vol. 49, No. 20. (5 October 2006), pp. 5851-5855. by Andrew R. Leach, Brian K. Shoichet, Catherine E. Peishoff posted to protein-ligand by massivemayhem on 2007-06-20 14:56:24 as along with 4 people ucbcjbm BragilMassoud dgruiz kazemi
	Relibase: Design and Development of a Database for Comprehensive Analysis of Protein-Ligand Interactions [My Copy] Journal of Molecular Biology, Vol. 326, No. 2. (14 February 2003), pp. 607-620. by M. Hendlich, A. Bergner, J. Gunther, G. Klebe posted to database protein-ligand by massivemayhem on 2007-06-20 14:00:04 as along with 1 person P2324548
	FireDB--a database of functionally important residues from proteins of known structure. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by G. Lopez, A. Valencia, M. Tress posted to protein-ligand protein-function database by massivemayhem on 2007-01-24 13:04:15 as
	BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007), pp. 198-201. by T. Liu, Y. Lin, X. Wen, R. N. Jorissen, M. K. Gilson posted to virtual-screening protein-ligand database binding-affinity by massivemayhem on 2007-01-15 16:58:16 as along with 1 person jfr

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protein-ligand	29
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networks	27
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systems-biology	21
protein-function	16
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genetics	13
cancer	13
protein-structure	13
association-studies	12
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human-genome	2
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protein-stability	2
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structure-based	2
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journal-club	2
weak-hbonds	2
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synonymous	1
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chemical_biology	1
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transmembrane	1
protein-drug	1
visualization	1
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structural-variation	1
insulin	1
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credo	1
graph-theory	1
ligands	1
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ligand	1
python	1
quality-assessment	1
blast	1
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epidemiology	1
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ring-interactions	1
interfaces	1
genotype	1
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molecule-shapes	1
cognate-ligand	1
x-ray	1
training-data	1
sequence	1
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function-prediction	1
structural-interactomics	1
imatinib	1
interactions	1
clinical	1
ligand-based-virtual-screening	1
orm	1
protein-restraints	1
geometry	1
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massivemayhem's protein-ligand [29 articles] Export Sort

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