CEAS: cis-regulatory element annotation system Export

@article{citeulike:5493830, abstract = {Summary: We present a tool designed to characterize genome-wide protein-DNA interaction patterns from ChIP-chip and ChIP-Seq data. This stand-alone extension of our web application CEAS (cis-regulatory element annotation system) provides summary statistics on ChIP enrichment in important genomic regions such as individual chromosomes, promoters, gene bodies or exons, and infers the genes most likely to be regulated by the binding factor under study. CEAS also enables biologists to visualize the average ChIP enrichment signals over specific genomic regions, particularly allowing observation of continuous and broad ChIP enrichment that might be too subtle to detect from ChIP peaks alone. Availability: The CEAS Python package is publicly available at http://liulab.dfci.harvard.edu/CEAS. Contact: shin@jimmy.harvard.edu; xsliu@jimmy.harvard.edu Supplementary information: Supplementary data are available at Bioinformatics online. 10.1093/bioinformatics/btp479}, author = {Shin, Hyunjin and Liu, Tao and Manrai, Arjun K. and Liu, X. Shirley}, citeulike-article-id = {5493830}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/bioinformatics/btp479}, citeulike-linkout-1 = {http://bioinformatics.oxfordjournals.org/content/25/19/2605.abstract}, citeulike-linkout-2 = {http://bioinformatics.oxfordjournals.org/content/25/19/2605.full.pdf}, citeulike-linkout-3 = {http://view.ncbi.nlm.nih.gov/pubmed/19689956}, citeulike-linkout-4 = {http://www.hubmed.org/display.cgi?uids=19689956}, day = {1}, doi = {10.1093/bioinformatics/btp479}, issn = {1460-2059}, journal = {Bioinformatics}, keywords = {chipseq, websites}, month = {October}, number = {19}, pages = {2605--2606}, posted-at = {2009-11-04 13:41:58}, priority = {2}, title = {CEAS: cis-regulatory element annotation system}, url = {http://dx.doi.org/10.1093/bioinformatics/btp479}, volume = {25}, year = {2009} }

TY - JOUR ID - citeulike:5493830 L3 - citeulike-article-id:5493830 N2 - Summary: We present a tool designed to characterize genome-wide protein-DNA interaction patterns from ChIP-chip and ChIP-Seq data. This stand-alone extension of our web application CEAS (cis-regulatory element annotation system) provides summary statistics on ChIP enrichment in important genomic regions such as individual chromosomes, promoters, gene bodies or exons, and infers the genes most likely to be regulated by the binding factor under study. CEAS also enables biologists to visualize the average ChIP enrichment signals over specific genomic regions, particularly allowing observation of continuous and broad ChIP enrichment that might be too subtle to detect from ChIP peaks alone. Availability: The CEAS Python package is publicly available at http://liulab.dfci.harvard.edu/CEAS. Contact: shin@jimmy.harvard.edu; xsliu@jimmy.harvard.edu Supplementary information: Supplementary data are available at Bioinformatics online. 10.1093/bioinformatics/btp479 IS - 19 JF - Bioinformatics SN - 1460-2059 EP - 2606 TI - CEAS: cis-regulatory element annotation system VL - 25 SP - 2605 KW - chipseq KW - websites AU - Shin, Hyunjin AU - Liu, Tao AU - Manrai, Arjun AU - Liu, Shirley PY - 2009/10/01/ UR - http://dx.doi.org/10.1093/bioinformatics/btp479 ER -