maximilianh's Eisen:MB [10 articles] Export

Recent papers posted to maximilianh's library by the author Eisen:MB. You can also see everyone's Eisen:MB.

	A condensin-like dosage compensation complex acts at a distance to control expression throughout the genome. [My Copy] Genes & development, Vol. 23, No. 5. (1 March 2009), pp. 602-618. by J. Jans, J. M. Gladden, E. J. Ralston, et al.C. S. Pickle, A. H. Michel, R. R. Pferdehirt, M. B. Eisen, B. J. Meyer posted to discovery motif whole by maximilianh on 2009-03-11 08:36:32 as
	Big Genomes Facilitate the Comparative Identification of Regulatory Elements [My Copy] PLoS ONE, Vol. 4, No. 3. (4 March 2009), e4688. by Brant K. Peterson, Emily E. Hare, Venky N. Iyer, et al.Steven Storage, Laura Conner, Daniel R. Papaj, Rick Kurashima, Eric Jang, Michael B. Eisen posted to cns-differences conservation cross-species-enhancer inter-cns-distances by maximilianh on 2009-03-10 13:55:36 as along with 8 people and 2 groups natstreet lusk dpollard JustinCrocker daveGerrard emmahe trfield idoerg RockmanLab BergmanLab
	Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation [My Copy] PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106. by Emily E. Hare, Brant K. Peterson, Venky N. Iyer, Rudolf Meier, Michael B. Eisen posted to cns-differences cns-similarity combination composition cross-species-enhancer drosophila noalignment notconserved by maximilianh on 2008-09-05 10:47:36 as along with 8 people and 2 groups lusk Stew emptyhb djkt stajich pradiptaray cisevol caseybrown Mycology cis-regulatory-evolution
	Tools for neuroanatomy and neurogenetics in Drosophila [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 28. (15 July 2008), pp. 9715-9720. by Barret D. Pfeiffer, Arnim Jenett, Ann S. Hammonds, et al.Teri-T B. Ngo, Sima Misra, Christine Murphy, Audra Scully, Joseph W. Carlson, Kenneth H. Wan, Todd R. Laverty, Chris Mungall, Rob Svirskas, James T. Kadonaga, Chris Q. Doe, Michael B. Eisen, Susan E. Celniker, Gerald M. Rubin posted to enhancer-screen promoter-minimal by maximilianh on 2008-09-05 09:40:58 as
	Determining physical constraints in transcriptional initiation complexes using DNA sequence analysis. [My Copy] PLoS ONE, Vol. 2, No. 11. (2007) by R. K. Shultzaberger, D. Y. Chiang, A. M. Moses, M. B. Eisen posted to cns-similarity combination pwm by maximilianh on 2008-08-25 15:03:56 as
	Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura. [My Copy] Genome Biol, Vol. 5, No. 9. (2004) by B. P. Berman, B. D. Pfeiffer, T. R. Laverty, et al.S. L. Salzberg, G. M. Rubin, M. B. Eisen, S. E. Celniker posted to enhancerprediction by maximilianh on 2008-06-12 12:17:31 as along with 9 people and 3 groups emptyhb cajunsushi mbeisen indigoviolet adepace Stew nklee cisevol Auger EisenLab cis-regulatory-evolution Dead 60's
	Use of an evolutionary model to provide evidence for a wide heterogeneity of required affinities between transcription factors and their binding sites in yeast. [My Copy] Pac Symp Biocomput (2008), pp. 489-500. by R. W. Lusk, M. B. Eisen posted to pwmimprovement by maximilianh on 2008-03-14 17:21:40 as along with 3 people and 2 groups lusk dpollard caseybrown EisenLab cis-regulatory-evolution
	In vivo enhancer analysis of human conserved non-coding sequences [My Copy] Nature by Len A. Pennacchio, Nadav Ahituv, Alan M. Moses, et al.Shyam Prabhakar, Marcelo A. Nobrega, Malak Shoukry, Simon Minovitsky, Inna Dubchak, Amy Holt, Keith D. Lewis, Ingrid Plajzer-Frick, Jennifer Akiyama, Sarah De Val, Veena Afzal, Brian L. Black, Olivier Couronne, Michael B. Eisen, Axel Visel, Edward M. Rubin posted to conserved enhancerprediction by maximilianh on 2008-02-29 17:30:33 as along with 5 people maximilianh_otx cisstem cckan heliopais gjuggler
	Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm. [My Copy] PLoS biology, Vol. 6, No. 2. (12 February 2008), e27. by X. Y. Li, S. MacArthur, R. Bourgon, et al.D. Nix, D. A. Pollard, V. N. Iyer, A. Hechmer, L. Simirenko, M. Stapleton, C. L. Luengo Hendriks, H. C. Chu, N. Ogawa, W. Inwood, V. Sementchenko, A. Beaton, R. Weiszmann, S. E. Celniker, D. W. Knowles, T. Gingeras, T. P. Speed, M. B. Eisen, M. D. Biggin posted to chipchip coding notconserved by maximilianh on 2008-02-16 17:47:48 as along with 8 people and 1 group gdb daveGerrard kengg caseybrown emptyhb brant isimpson Stew BergmanLab
	Large-scale turnover of functional transcription factor binding sites in Drosophila. [My Copy] PLoS Comput Biol, Vol. 2, No. 10. (October 2006) by A. M. Moses, D. A. Pollard, D. A. Nix, et al.V. N. Iyer, X. Y. Li, M. D. Biggin, M. B. Eisen posted to cns-differences by maximilianh on 2007-11-08 17:48:58 as along with 6 people and 2 groups caseybrown adepace eukfn lusk cisevol emptyhb EisenLab cis-regulatory-evolution

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fromconnotea	411
motif	177
discovery	129
duplicates	59
scanning	57
enhancer	56
synteny	56
tandem	53
syntenypaper	52
enhancerprediction	43
molecularbiologytechniques	41
combination	36
cns-differences	34
factors	32
cns	32
geneorder	30
cross-species-enhancer	28
noalignment	28
wnt	26
review	24
ncrna	22
conserved	22
phylogenomics	21
phylogeny	19
chipchip	19
alignment	19
transcription	18
promoter	17
ultraconserved	17
repeated	16
notconserved	16
rennes	16
cis-trans	15
otx	15
whole	14
genome	14
pcr	14
enhancerpromotercompatibility	12
insulator	12
cluster	12
disease	11
websites	11
pwm	11
tools	11
randombreakage	10
chromatin	10
mirna	10
cns-ranking	10
ciona	10
pwmimprovement	10
cns-enhancer-screen	10
dna	9
cns-collaboration	9
promoters	8
pitx	8
genome-papers	8
3dstructure	8
cns-similarity	8
genomicregulatoryblocks	8
conservation	7
snp	7
genes	7
syntenytools	7
promoterprediction	7
pwmcomparison	7
application	7
genomeregulatoryblocks	7
long-range	6
phenotype	6
enhancer-screen	6
enhanceosome	6
enhancer-vertebrate-invertebrate	6
bidirectionalpromoters	6
position	6
redundancy	6
orthology	6
similarity	5
structure	5
validated	5
expression	5
enhancer-and-repeats	5
enhancerdistances	5
chipseq	5
genecoregulation	5
textmining	5
methylation	5
microrna	5
comparative	5
energy_model	4
introns	4
wholegenomescanning	4
comparison	4
enhancerincodingregion	4
antisensetranscription	4
interchromosomal	4
enhancersharing	4
enhancer-prediction	4
otxpaper	4
interaction	4
recognition	4
silencer	4
footprinting	4
competition	4
region	4
regulatory	3
copy-number-variation	3
cionapopulationgenetics	3
rna-binding	3
ncrnas	3
regions	3
syntenyorientation	3
matrix	3
mirnaenhancer	3
model-species	3
replicationorigins	3
term_recognition	3
phylotypicstage	3
tf	3
evoluation	3
inter-cns-distances	3
promoter-minimal	3
encode	3
go	3
composition	3
coding	3
thermodynamicalmodels	3
genometrees	3
myarticles	3
factorclass	3
trainingset	3
mutations	3
protocols	2
ascidians	2
grn	2
genomiccontext	2
prediction	2
tfsynergy	2
cns-database	2
binding	2
pluripotency	2
factorinteractions	2
regulatory-flexibility	2
ciona-gene-annotation	2
ncrna-long	2
spacing	2
cellsortingbasedanalysis	2
mammals	2
strengthofmatch	2
microarray	2
enhancer-stage-specificity	2
pvalue-multiplicity	2
pituitary	2
whyconserved	2
drosophila	2
histones	2
molecularbiologytools	2
bullshitarticles	2
of	2
3putr	2
polymorphism	2
networks	2
codingconservation	2
core	2
site-prediction	2
assayscisregwetlab	2
rearrangement	2
jshypotheses	2
coexpression	2
ultraconserveddefinition	2
doublets	1
books	1
hmm	1
grns	1
bioinformatics	1
nomotif	1
olfactoryreceptors	1
fugu	1
sites	1
fastindexing	1
dlx	1
syntenypapers	1
generegulatorynetworks	1
degeneratesites	1
nucleosome	1
cell-cultures	1
enhancer-contextanalysis	1
duplicatese	1
ciona-gene-annotations	1
writing	1
smarts	1
gene_expression_databases	1
drosophia	1
intra-primate	1
genomeregulatoryblock	1
element	1
arx	1
factorsclass	1
insertionsdeletions	1
purificationfromdna	1
kernel	1
primers	1
statistics	1
igh	1
cns-enhancer	1
suppressor	1
generalregulation	1
positiveselection	1
word	1
genemodels	1
genefamilyfootprinting	1
tr-reviews	1
noaccess	1
impossible	1
cisregdatabase	1
turnover	1
cns-difference	1
autoregulation	1
cns-enhance	1
drosphila	1
pax6	1
applicationbioinf	1
phylogenytools	1
notconservedfunction	1
gibbs	1
microarray-analysis	1
decoy	1
transgenesis	1

maximilianh's Eisen:MB [10 articles] Export

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