maximilianh's Frith:M [5 articles] Export

Recent papers posted to maximilianh's library by the author Frith:M. You can also see everyone's Frith:M.

	MEME SUITE: tools for motif discovery and searching. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), pp. W202-208. by Timothy L. Bailey, Mikael Boden, Fabian A. Buske, et al.Martin Frith, Charles E. Grant, Luca Clementi, Jingyuan Ren, Wilfred W. Li, William S. Noble posted to websites tools motif by maximilianh on 2009-09-17 12:13:05 as along with 7 people bsamal suizifish jlike natstreet idonaldson nuin cassj
	Detection of cis -element clusters in higher eukaryotic DNA [My Copy] Bioinformatics, Vol. 17, No. 10. (1 October 2001), pp. 878-889. by Martin C. Frith, Ulla Hansen, Zhiping Weng posted to combination motif by maximilianh on 2009-04-28 13:29:14 as along with 2 people and 2 groups daveGerrard indigoviolet BergmanLab EisenLab
	Antisense transcription in the mammalian transcriptome. [My Copy] Science (New York, N.Y.), Vol. 309, No. 5740. (2 September 2005), pp. 1564-1566. by S. Katayama, Y. Tomaru, T. Kasukawa, et al.K. Waki, M. Nakanishi, M. Nakamura, H. Nishida, C. C. Yap, M. Suzuki, J. Kawai, H. Suzuki, P. Carninci, Y. Hayashizaki, C. Wells, M. Frith, T. Ravasi, K. C. Pang, J. Hallinan, J. Mattick, D. A. Hume, L. Lipovich, S. Batalov, P. G. Engström, Y. Mizuno, M. A. Faghihi, A. Sandelin, A. M. Chalk, S. Mottagui-Tabar, Z. Liang, B. Lenhard, C. Wahlestedt, RIKEN Genome Exploration Research Group, Genome Science Group (Genome Network Project Core Group), FANTOM Consortium posted to antisensetranscription by maximilianh on 2009-04-08 17:34:43 as along with 6 people rsaito mamitamura galka8_diploma daforerog xwbcn olympos
	The whole alignment and nothing but the alignment: the problem of spurious alignment flanks. [My Copy] Nucleic acids research (16 September 2008) by Martin C C. Frith, Yonil Park, Sergey L L. Sheetlin, John L L. Spouge posted to alignment by maximilianh on 2008-11-29 15:50:24 as along with 4 people and 1 group Neeperando cisevol sebastien_vigneau nuin BergmanLab
	A code for transcription initiation in mammalian genomes. [My Copy] Genome research, Vol. 18, No. 1. (21 January 2008), pp. 1-12. by M. C. Frith, E. Valen, A. Krogh, Y. Hayashizaki, P. Carninci, A. Sandelin posted to promoterprediction promoters by maximilianh on 2008-01-04 16:26:06 as along with 12 people megraw guhjy rpatward inesdesantiago myrtilus dchughes cabbagezs idonaldson oelemento gjuggler ohara gracio

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fromconnotea	411
motif	178
discovery	130
duplicates	59
scanning	57
synteny	56
enhancer	56
tandem	53
syntenypaper	52
enhancerprediction	43
molecularbiologytechniques	41
combination	37
cns-differences	34
factors	32
cns	32
geneorder	30
cross-species-enhancer	28
noalignment	28
wnt	26
review	24
conserved	22
ncrna	22
phylogenomics	21
phylogeny	20
alignment	19
chipchip	19
transcription	18
promoter	17
ultraconserved	17
repeated	16
notconserved	16
rennes	16
otx	15
cis-trans	15
genome	14
pcr	14
whole	14
enhancerpromotercompatibility	13
tools	12
insulator	12
cluster	12
disease	11
pwm	11
websites	11
cns-enhancer-screen	10
cns-ranking	10
chromatin	10
cns-collaboration	10
ciona	10
mirna	10
pwmimprovement	10
randombreakage	10
dna	9
3dstructure	8
genomicregulatoryblocks	8
pitx	8
genome-papers	8
cns-similarity	8
promoters	8
genomeregulatoryblocks	7
application	7
pwmcomparison	7
snp	7
redundancy	7
conservation	7
genes	7
syntenytools	7
promoterprediction	7
textmining	6
enhancer-vertebrate-invertebrate	6
long-range	6
bidirectionalpromoters	6
phenotype	6
enhancer-screen	6
position	6
enhanceosome	6
orthology	6
expression	5
structure	5
enhancersharing	5
microrna	5
methylation	5
enhancer-and-repeats	5
validated	5
similarity	5
genecoregulation	5
comparative	5
chipseq	5
enhancerdistances	5
footprinting	4
enhancer-prediction	4
recognition	4
interaction	4
wholegenomescanning	4
enhancerincodingregion	4
interchromosomal	4
otxpaper	4
silencer	4
antisensetranscription	4
energy_model	4
region	4
competition	4
comparison	4
introns	4
term_recognition	3
genometrees	3
encode	3
trainingset	3
factorclass	3
tf	3
evoluation	3
inter-cns-distances	3
enhancer-stage-specificity	3
composition	3
copy-number-variation	3
model-species	3
syntenyorientation	3
matrix	3
coding	3
myarticles	3
regions	3
mutations	3
rna-binding	3
mirnaenhancer	3
regulatory	3
cionapopulationgenetics	3
replicationorigins	3
phylotypicstage	3
ncrnas	3
promoter-minimal	3
thermodynamicalmodels	3
go	3
pluripotency	2
cns-database	2
binding	2
coexpression	2
ultraconserveddefinition	2
factorinteractions	2
grn	2
regulatory-flexibility	2
ciona-gene-annotation	2
spacing	2
ncrna-long	2
strengthofmatch	2
cellsortingbasedanalysis	2
mammals	2
pvalue-multiplicity	2
pituitary	2
whyconserved	2
prediction	2
tfsynergy	2
drosophila	2
microarray	2
molecularbiologytools	2
histones	2
of	2
3putr	2
polymorphism	2
bullshitarticles	2
networks	2
codingconservation	2
core	2
site-prediction	2
assayscisregwetlab	2
rearrangement	2
jshypotheses	2
genomiccontext	2
ascidians	2
protocols	2
doublets	1
books	1
genefamilyfootprinting	1
pax6	1
degeneratesites	1
syntenypapers	1
olfactoryreceptors	1
fugu	1
decoy	1
fastindexing	1
intra-primate	1
hmm	1
nomotif	1
enhancer-contextanalysis	1
element	1
gene_expression_databases	1
screening	1
sites	1
dlx	1
writing	1
nucleosome	1
transgenesis	1
drosophia	1
genomeregulatoryblock	1
duplicatese	1
microarray-analysis	1
word	1
factorsclass	1
insertionsdeletions	1
bioinformatics	1
kernel	1
primers	1
cns-enhancer	1
autoregulation	1
igh	1
statistics	1
cell-cultures	1
cns-enhance	1
smarts	1
suppressor	1
generalregulation	1
applicationbioinf	1
tr-reviews	1
ciona-gene-annotations	1
impossible	1
positiveselection	1
turnover	1
cns-difference	1
arx	1
drosphila	1
genemodels	1
grns	1
noaccess	1
phylogenytools	1
notconservedfunction	1
gibbs	1
cisregdatabase	1
generegulatorynetworks	1
purificationfromdna	1