CiteULike: maximilianh's Hallinan:J [1 article]

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fromconnotea	411
motif	178
discovery	130
duplicates	59
scanning	57
synteny	56
enhancer	56
tandem	53
syntenypaper	52
enhancerprediction	43
molecularbiologytechniques	41
combination	37
cns-differences	34
factors	32
cns	32
geneorder	30
cross-species-enhancer	28
noalignment	28
wnt	26
review	24
conserved	22
ncrna	22
phylogenomics	21
phylogeny	20
alignment	19
chipchip	19
transcription	18
promoter	17
ultraconserved	17
repeated	16
notconserved	16
rennes	16
otx	15
cis-trans	15
genome	14
pcr	14
whole	14
enhancerpromotercompatibility	13
tools	12
insulator	12
cluster	12
disease	11
pwm	11
websites	11
cns-enhancer-screen	10
cns-ranking	10
chromatin	10
cns-collaboration	10
ciona	10
mirna	10
pwmimprovement	10
randombreakage	10
dna	9
3dstructure	8
genomicregulatoryblocks	8
pitx	8
genome-papers	8
cns-similarity	8
promoters	8
genomeregulatoryblocks	7
application	7
pwmcomparison	7
snp	7
redundancy	7
conservation	7
genes	7
syntenytools	7
promoterprediction	7
textmining	6
enhancer-vertebrate-invertebrate	6
long-range	6
bidirectionalpromoters	6
phenotype	6
enhancer-screen	6
position	6
enhanceosome	6
orthology	6
expression	5
structure	5
enhancersharing	5
microrna	5
methylation	5
enhancer-and-repeats	5
validated	5
similarity	5
genecoregulation	5
comparative	5
chipseq	5
enhancerdistances	5
footprinting	4
enhancer-prediction	4
recognition	4
interaction	4
wholegenomescanning	4
enhancerincodingregion	4
interchromosomal	4
otxpaper	4
silencer	4
antisensetranscription	4
energy_model	4
region	4
competition	4
comparison	4
introns	4
term_recognition	3
genometrees	3
encode	3
trainingset	3
factorclass	3
tf	3
evoluation	3
inter-cns-distances	3
enhancer-stage-specificity	3
composition	3
copy-number-variation	3
model-species	3
syntenyorientation	3
matrix	3
coding	3
myarticles	3
regions	3
mutations	3
rna-binding	3
mirnaenhancer	3
regulatory	3
cionapopulationgenetics	3
replicationorigins	3
phylotypicstage	3
ncrnas	3
promoter-minimal	3
thermodynamicalmodels	3
go	3
pluripotency	2
cns-database	2
binding	2
coexpression	2
ultraconserveddefinition	2
factorinteractions	2
grn	2
regulatory-flexibility	2
ciona-gene-annotation	2
spacing	2
ncrna-long	2
strengthofmatch	2
cellsortingbasedanalysis	2
mammals	2
pvalue-multiplicity	2
pituitary	2
whyconserved	2
prediction	2
tfsynergy	2
drosophila	2
microarray	2
molecularbiologytools	2
histones	2
of	2
3putr	2
polymorphism	2
bullshitarticles	2
networks	2
codingconservation	2
core	2
site-prediction	2
assayscisregwetlab	2
rearrangement	2
jshypotheses	2
genomiccontext	2
ascidians	2
protocols	2
doublets	1
books	1
genefamilyfootprinting	1
pax6	1
degeneratesites	1
syntenypapers	1
olfactoryreceptors	1
fugu	1
decoy	1
fastindexing	1
intra-primate	1
hmm	1
nomotif	1
enhancer-contextanalysis	1
element	1
gene_expression_databases	1
screening	1
sites	1
dlx	1
writing	1
nucleosome	1
transgenesis	1
drosophia	1
genomeregulatoryblock	1
duplicatese	1
microarray-analysis	1
word	1
factorsclass	1
insertionsdeletions	1
bioinformatics	1
kernel	1
primers	1
cns-enhancer	1
autoregulation	1
igh	1
statistics	1
cell-cultures	1
cns-enhance	1
smarts	1
suppressor	1
generalregulation	1
applicationbioinf	1
tr-reviews	1
ciona-gene-annotations	1
impossible	1
positiveselection	1
turnover	1
cns-difference	1
arx	1
drosphila	1
genemodels	1
grns	1
noaccess	1
phylogenytools	1
notconservedfunction	1
gibbs	1
cisregdatabase	1
generegulatorynetworks	1
purificationfromdna	1

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