maximilianh's Lin [19 articles] Export

Recent papers posted to maximilianh's library by the author Lin. You can also see everyone's Lin.

	Profiling the Human Protein-DNA Interactome Reveals ERK2 as a Transcriptional Repressor of Interferon Signaling [My Copy] Cell, Vol. 139, No. 3. (30 October 2009), pp. 610-622. by Shaohui Hu, Zhi Xie, Akishi Onishi, et al.Xueping Yu, Lizhi Jiang, Jimmy Lin, Hee-sool Rho, Crystal Woodard, Hong Wang, Jun-Seop Jeong posted to pwmimprovement pwm matrix by maximilianh on 2009-11-10 17:48:51 as along with 3 people tmmurali renatomilani idonaldson
	Conservation and implications of eukaryote transcriptional regulatory regions across multiple species [My Copy] BMC Genomics, Vol. 9 (20 December 2008), 623. by Lin, Minping Qian posted to cns-ranking enhancerprediction by maximilianh on 2009-03-23 14:29:22 as
	Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues [My Copy] Nucleic Acids Research, Vol. 34, No. 17. (October 2006), pp. 4925-4936. by Yu, Xueping, Lin, et al. Jimmy, Zack, J. Donald, Qian, Jiang posted to factorinteractions by maximilianh on 2009-01-15 22:42:55 as along with 2 people olympos snow_dragon
	Ultraconserved coding regions outside the homeobox of mammalian Hox genes [My Copy] BMC Evolutionary Biology, Vol. 8 (24 September 2008), 260. by Zhenguo Lin, Hong Ma, Masatoshi Nei posted to ultraconserveddefinition by maximilianh on 2008-09-29 14:33:30 as along with 2 people jm12 agustinarce
	OGtree: a tool for creating genome trees of prokaryotes based on overlapping genes. [My Copy] Nucleic acids research (2 May 2008) by Li-Wei W. Jiang, Kuang-Lun L. Lin, Chin Lung L. Lu posted to synteny syntenypaper syntenytools by maximilianh on 2008-05-11 22:20:19 as
	Promoter targeting sequence mediates enhancer interference in the Drosophila embryo. [My Copy] Proc Natl Acad Sci U S A, Vol. 104, No. 9. (27 February 2007), pp. 3237-3242. by Q. Lin, Q. Chen, L. Lin, S. Smith, J. Zhou posted to competition enhancerpromotercompatibility promoter by maximilianh on 2008-02-18 15:01:15 as
	Distinguishing protein-coding and noncoding genes in the human genome [My Copy] Proceedings of the National Academy of Sciences In Proceedings of the National Academy of Sciences, Vol. 104, No. 49. (4 December 2007), pp. 19428-19433. by Michele Clamp, Ben Fry, Mike Kamal, et al.Xiaohui Xie, James Cuff, Michael F. Lin, Manolis Kellis, Kerstin Lindblad-Toh, Eric S. Lander posted to genes by maximilianh on 2007-12-03 17:50:00 as along with 18 people and 3 groups bpcusack antonkratz jo_davies tmmurali rvosa balicea sebastien_vigneau giovanni neils stajich cjeans cabbagezs oelemento gjuggler slroberd renatomilani gracio Ema EisenLab FAB-lab Mycology
	Transposase-Derived Transcription Factors Regulate Light Signaling in Arabidopsis [My Copy] Science, Vol. 318, No. 5854. (23 November 2007), pp. 1302-1305. by Rongcheng Lin, Lei Ding, Claudio Casola, Daniel R. Ripoll, Cedric Feschotte, Haiyang Wang posted to factors transcription by maximilianh on 2007-11-23 17:16:54 as
	Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (09 November 2007), 437. by Xueping Yu, Jimmy Lin, Donald Zack, Jiang Qian posted to cluster motif by maximilianh on 2007-11-16 17:48:33 as along with 10 people roys isimpson guhjy chad_davis mikaelhuss nklee idonaldson njcitulike bootsy snow_dragon
	Characterizing the cancer genome in lung adenocarcinoma [My Copy] Nature, Vol. advanced online publication (Nov 2007) by Barbara Weir, Michele Woo, Gad Getz, et al.Sven Perner, Li Ding, Rameen Beroukhim, William Lin, Michael Province, Aldi Kraja, Laura Johnson, Kinjal Shah, Mitsuo Sato, Roman Thomas, Justine Barletta, Ingrid Borecki, Stephen Broderick, Andrew Chang, Derek Chiang, Lucian Chirieac, Jeonghee Cho, Yoshitaka Fujii, Adi Gazdar, Thomas Giordano, Heidi Greulich, Megan Hanna, Bruce Johnson, Mark Kris, Alex Lash, Ling Lin, Neal Lindeman, Elaine Mardis, John Mcpherson, John Minna, Margaret Morgan, Mark Nadel, Mark Orringer, John Osborne, Brad Ozenberger, Alex Ramos, James Robinson, Jack Roth, Valerie Rusch, Hidefumi Sasaki, Frances Shepherd, Carrie Sougnez, Margaret Spitz, Ming S. Tsao, David Twomey, Roel Verhaak, George Weinstock, David Wheeler, Wendy Winckler, Akihiko Yoshizawa, Soyoung Yu, Maureen Zakowski, Qunyuan Zhang, David Beer, Ignacio Wistuba, Mark Watson, Levi Garraway, Marc Ladanyi, William Travis, William Pao, Mark Rubin, Stacey Gabriel, Richard Gibbs, Harold Varmus, Richard Wilson, Eric Lander, Matthew Meyerson posted to genes tandem by maximilianh on 2007-11-05 18:22:02 as
	Identification and Characterization of Cell Type-Specific and Ubiquitous Chromatin Regulatory Structures in the Human Genome. [My Copy] PLoS Genet, Vol. 3, No. 8. (17 August 2007) by Hualin Xi, Hennady P P. Shulha, Jane M M. Lin, et al.Teresa R R. Vales, Yutao Fu, David M M. Bodine, Ronald D G D. McKay, Josh G G. Chenoweth, Paul J J. Tesar, Terrence S S. Furey, Bing Ren, Zhiping Weng, Gregory E E. Crawford posted to cns insulator by maximilianh on 2007-10-23 19:05:27 as along with 6 people and 2 groups caseybrown dchughes sebastien_vigneau zwang cabbagezs eviledv G4ID Genetics-of-Gambling
	Multiple upstream modules regulate zebrafish myf5 expression. [My Copy] BMC developmental biology, Vol. 7 (xx 2007), pp. 1-1. by Yau H. Chen, Yun H. Wang, Min Y. Chang, et al.Cheng Y. Lin, Chih W. Weng, Monte Westerfield, Huai J. Tsai posted to enhancer fromconnotea by maximilianh on 2007-09-23 12:59:14 as
	Overlapping genes in vertebrate genomes. [My Copy] Computational biology and chemistry, Vol. 29 (Feb 2005), pp. 1-2. by Izabela Makalowska, Chiao F. Lin, Wojciech Makalowski posted to genes fromconnotea by maximilianh on 2007-09-23 12:59:11 as
	Promoter targeting sequence mediates enhancer interference in the Drosophila embryo. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104 (Feb 2007), pp. 3237-3242. by Qing Lin, Qi Chen, Lan Lin, Sheryl Smith, Jumin Zhou posted to enhancer fromconnotea by maximilianh on 2007-09-23 12:59:10 as
	CTCF-Dependent Chromatin Boundary Element between the Latency-Associated Transcript and ICP0 Promoters in the Herpes Simplex Virus Type 1 Genome. [My Copy] Journal of virology, Vol. 81 (May 2007), pp. 5192-5201. by Qi Chen, Lan Lin, Sheryl Smith, Jing Huang, Shelley Berger, Jumin Zhou posted to silencer fromconnotea by maximilianh on 2007-09-23 12:59:10 as
	Whole-Genome Cartography of Estrogen Receptor alpha Binding Sites. [My Copy] PLoS Genet, Vol. 3 (Jun 2007), pp. 87-87. by Chin Y. Lin, Vinsensius Vega, Jane Thomsen, et al.Tao Zhang, Say Kong, Min Xie, Kuo Chiu, Leonard Lipovich, Daniel Barnett, Fabio Stossi, Ailing Yeo, Joshy George, Vladimir Kuznetsov, Yew Lee, Tze Charn, Nallasivam Palanisamy, Lance Miller, Edwin Cheung, Benita Katzenellenbogen, Yijun Ruan, Guillaume Bourque, Chia L. Wei, Edison Liu posted to cns-differences fromconnotea by maximilianh on 2007-09-23 12:59:08 as
	Systematic detection of statistically overrepresented DNA motif association rules. [My Copy] Genome informatics. International Conference on Genome Informatics, Vol. 17 (xx 2006), pp. 124-133. by Jane Lin, Zhiping Weng posted to discovery motif fromconnotea by maximilianh on 2007-09-23 12:59:04 as
	Transcription factor binding and modified histones in human bidirectional promoters. [My Copy] Genome research, Vol. 17 (Jun 2007), pp. 818-827. by Jane Lin, Patrick Collins, Nathan Trinklein, et al.Yutao Fu, Hualin Xi, Richard Myers, Zhiping Weng posted to bidirectionalpromoters fromconnotea by maximilianh on 2007-09-23 12:59:02 as
	Transcription factor binding and modified histones in human bidirectional promoters [My Copy] Genome Research, Vol. 17 (Jun 2007), pp. 818-827. by Jane Lin, Patrick Collins, Nathan Trinklein, et al.Yutao Fu, Hualin Xi, Richard Myers, Zhiping Weng posted to bidirectionalpromoters fromconnotea by maximilianh on 2007-09-23 12:59:01 as

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fromconnotea	411
motif	178
discovery	130
duplicates	59
scanning	57
synteny	56
enhancer	56
tandem	53
syntenypaper	52
enhancerprediction	43
molecularbiologytechniques	41
combination	37
cns-differences	34
factors	32
cns	32
geneorder	30
cross-species-enhancer	28
noalignment	28
wnt	26
review	24
conserved	22
ncrna	22
phylogenomics	21
phylogeny	20
alignment	19
chipchip	19
transcription	18
promoter	17
ultraconserved	17
repeated	16
notconserved	16
rennes	16
otx	15
cis-trans	15
genome	14
pcr	14
whole	14
enhancerpromotercompatibility	13
tools	12
insulator	12
cluster	12
disease	11
pwm	11
websites	11
cns-enhancer-screen	10
cns-ranking	10
chromatin	10
cns-collaboration	10
ciona	10
mirna	10
pwmimprovement	10
randombreakage	10
dna	9
3dstructure	8
genomicregulatoryblocks	8
pitx	8
genome-papers	8
cns-similarity	8
promoters	8
genomeregulatoryblocks	7
application	7
pwmcomparison	7
snp	7
redundancy	7
conservation	7
genes	7
syntenytools	7
promoterprediction	7
textmining	6
enhancer-vertebrate-invertebrate	6
long-range	6
bidirectionalpromoters	6
phenotype	6
enhancer-screen	6
position	6
enhanceosome	6
orthology	6
expression	5
structure	5
enhancersharing	5
microrna	5
methylation	5
enhancer-and-repeats	5
validated	5
similarity	5
genecoregulation	5
comparative	5
chipseq	5
enhancerdistances	5
footprinting	4
enhancer-prediction	4
recognition	4
interaction	4
wholegenomescanning	4
enhancerincodingregion	4
interchromosomal	4
otxpaper	4
silencer	4
antisensetranscription	4
energy_model	4
region	4
competition	4
comparison	4
introns	4
term_recognition	3
genometrees	3
encode	3
trainingset	3
factorclass	3
tf	3
evoluation	3
inter-cns-distances	3
enhancer-stage-specificity	3
composition	3
copy-number-variation	3
model-species	3
syntenyorientation	3
matrix	3
coding	3
myarticles	3
regions	3
mutations	3
rna-binding	3
mirnaenhancer	3
regulatory	3
cionapopulationgenetics	3
replicationorigins	3
phylotypicstage	3
ncrnas	3
promoter-minimal	3
thermodynamicalmodels	3
go	3
pluripotency	2
cns-database	2
binding	2
coexpression	2
ultraconserveddefinition	2
factorinteractions	2
grn	2
regulatory-flexibility	2
ciona-gene-annotation	2
spacing	2
ncrna-long	2
strengthofmatch	2
cellsortingbasedanalysis	2
mammals	2
pvalue-multiplicity	2
pituitary	2
whyconserved	2
prediction	2
tfsynergy	2
drosophila	2
microarray	2
molecularbiologytools	2
histones	2
of	2
3putr	2
polymorphism	2
bullshitarticles	2
networks	2
codingconservation	2
core	2
site-prediction	2
assayscisregwetlab	2
rearrangement	2
jshypotheses	2
genomiccontext	2
ascidians	2
protocols	2
doublets	1
books	1
genefamilyfootprinting	1
pax6	1
degeneratesites	1
syntenypapers	1
olfactoryreceptors	1
fugu	1
decoy	1
fastindexing	1
intra-primate	1
hmm	1
nomotif	1
enhancer-contextanalysis	1
element	1
gene_expression_databases	1
screening	1
sites	1
dlx	1
writing	1
nucleosome	1
transgenesis	1
drosophia	1
genomeregulatoryblock	1
duplicatese	1
microarray-analysis	1
word	1
factorsclass	1
insertionsdeletions	1
bioinformatics	1
kernel	1
primers	1
cns-enhancer	1
autoregulation	1
igh	1
statistics	1
cell-cultures	1
cns-enhance	1
smarts	1
suppressor	1
generalregulation	1
applicationbioinf	1
tr-reviews	1
ciona-gene-annotations	1
impossible	1
positiveselection	1
turnover	1
cns-difference	1
arx	1
drosphila	1
genemodels	1
grns	1
noaccess	1
phylogenytools	1
notconservedfunction	1
gibbs	1
cisregdatabase	1
generegulatorynetworks	1
purificationfromdna	1

maximilianh's Lin [19 articles] Export

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