maximilianh's Vingron:M [10 articles] Export Sort

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	CpG-depleted promoters harbor tissue-specific transcription factor binding signals--implications for motif overrepresentation analyses [My Copy] Nucl. Acids Res., Vol. 37, No. 19. (1 October 2009), pp. 6305-6315. by Helge G. Roider, Boris Lenhard, Aditi Kanhere, Stefan A. Haas, Martin Vingron posted to promoter enhancer-prediction by maximilianh on 2009-10-20 23:37:41 as along with 3 people and 1 group bmajoros daveGerrard idonaldson BergmanLab
	Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention. [My Copy] Genome research, Vol. 19, No. 11. (29 November 2009), pp. 2036-2051. by Andrew L. Hufton, Susanne Mathia, Helene Braun, et al.Udo Georgi, Hans Lehrach, Martin Vingron, Albert J. Poustka, Georgia Panopoulou posted to synteny pax6 noalignment genomeregulatoryblocks enhancer by maximilianh on 2009-08-27 10:37:09 as along with 4 people and 1 group provero djkt alhufton brant Journal picks
	PASTAA: identifying transcription factors associated with sets of co-regulated genes [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 4. (15 February 2009), pp. 435-442. by Helge G. Roider, Thomas Manke, Sean O'Keeffe, Martin Vingron, Stefan A. Haas posted to thermodynamicmodels scanning promoter-minimal promoter enhancerpromotercompatibility by maximilianh on 2009-03-25 19:34:47 as along with 11 people and 1 group bsamal TRHvidsten jimineep cassj idonaldson dswan djkt dolchan nuin natstreet druvus Bioinformatics
	Comparative 3'UTR analysis allows identification of regulatory clusters that drive Eph/ephrin expression in cancer cell lines. [My Copy] PLoS ONE, Vol. 3, No. 7. (2008) by J. Winter, S. Roepcke, S. Krause, et al.E. C. Müller, A. Otto, M. Vingron, S. Schweiger posted to 3putr by maximilianh on 2008-09-29 14:29:36 as along with 1 person jfr
	Statistical modeling of transcription factor binding affinities predicts regulatory interactions. [My Copy] PLoS Comput Biol, Vol. 4, No. 3. (March 2008) by T. Manke, H. G. Roider, M. Vingron posted to combination scanning tfsynergy by maximilianh on 2008-03-30 18:52:53 as along with 2 people jjray eskay
	Natural similarity measures between position frequency matrices with an application to clustering [My Copy] Bioinformatics In Bioinformatics, Vol. 24, No. 3. (1 February 2008), pp. 350-357. by Utz J. Pape, Sven Rahmann, Martin Vingron posted to pwmcomparison by maximilianh on 2008-01-06 10:48:52 as along with 5 people bsamal nklee mclarenv csdhwang kmdaily
	Incorporating evolution of transcription factor binding sites into annotated alignments. [My Copy] J Biosci, Vol. 32, No. 5. (August 2007), pp. 841-850. by A. S. Bais, S. Grossmann, M. Vingron posted to alignment by maximilianh on 2007-10-09 18:18:53 as along with 1 person and 2 groups dpollard EisenLab cis-regulatory-evolution
	Simultaneous alignment and annotation of cis-regulatory regions. [My Copy] Bioinformatics (Oxford, England), Vol. 23 (Jan 2007), pp. 44-49. by Abha Bais, Steffen Grossmann, Martin Vingron posted to alignment fromconnotea by maximilianh on 2007-09-23 12:59:11 as
	Predicting transcription factor affinities to DNA from a biophysical model. [My Copy] Bioinformatics (Oxford, England), Vol. 23 (Jan 2007), pp. 134-141. by Helge Roider, Aditi Kanhere, Thomas Manke, Martin Vingron posted to thermodynamicmodels scanning motif fromconnotea by maximilianh on 2007-09-23 12:59:11 as
	A new statistical model to select target sequences bound by transcription factors. [My Copy] Genome informatics. International Conference on Genome Informatics, Vol. 17 (xx 2006), pp. 134-140. by Utz Pape, Steffen Grossmann, Stefanie Hammer, Silke Sperling, Martin Vingron posted to motif scanning fromconnotea by maximilianh on 2007-09-23 12:59:09 as

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fromconnotea	411
motif	178
discovery	130
duplicates	59
scanning	57
enhancer	56
synteny	56
tandem	53
syntenypaper	52
enhancerprediction	43
molecularbiologytechniques	41
combination	37
cns-differences	34
factors	32
cns	32
geneorder	30
cross-species-enhancer	28
noalignment	28
wnt	26
review	24
ncrna	23
conserved	22
phylogenomics	21
phylogeny	20
alignment	19
chipchip	19
transcription	18
ultraconserved	18
promoter	17
notconserved	16
rennes	16
repeated	16
otx	15
cis-trans	15
whole	14
genome	14
pcr	14
tools	13
enhancerpromotercompatibility	13
insulator	12
cluster	12
disease	11
websites	11
pwm	11
mirna	10
chromatin	10
pwmimprovement	10
cns-collaboration	10
cns-enhancer-screen	10
randombreakage	10
cns-ranking	10
ciona	10
dna	9
thermodynamicmodels	9
3dstructure	8
pitx	8
promoters	8
genome-papers	8
genomicregulatoryblocks	8
cns-similarity	8
redundancy	7
pwmcomparison	7
snp	7
application	7
conservation	7
genomeregulatoryblocks	7
promoterprediction	7
genes	7
syntenytools	7
long-range	6
enhancer-screen	6
chipseq	6
enhancer-vertebrate-invertebrate	6
orthology	6
bidirectionalpromoters	6
position	6
phenotype	6
enhanceosome	6
textmining	6
similarity	5
structure	5
validated	5
expression	5
enhancer-and-repeats	5
enhancerdistances	5
genecoregulation	5
enhancersharing	5
methylation	5
microrna	5
comparative	5
introns	4
wholegenomescanning	4
enhancerincodingregion	4
silencer	4
enhancer-prediction	4
interchromosomal	4
antisensetranscription	4
comparison	4
otxpaper	4
competition	4
recognition	4
footprinting	4
interaction	4
region	4
mutations	3
regulatory	3
copy-number-variation	3
genometrees	3
rna-binding	3
ncrnas	3
phylotypicstage	3
regions	3
cionapopulationgenetics	3
mirnaenhancer	3
model-species	3
replicationorigins	3
syntenyorientation	3
term_recognition	3
matrix	3
encode	3
tf	3
evoluation	3
inter-cns-distances	3
trainingset	3
promoter-minimal	3
go	3
composition	3
myarticles	3
factorclass	3
enhancer-stage-specificity	3
coding	3
regulatory-flexibility	2
ascidians	2
ultraconserveddefinition	2
genomiccontext	2
grn	2
tfsynergy	2
cns-database	2
binding	2
factorinteractions	2
pluripotency	2
coexpression	2
ciona-gene-annotation	2
spacing	2
ncrna-long	2
cellsortingbasedanalysis	2
mammals	2
strengthofmatch	2
microarray	2
pvalue-multiplicity	2
pituitary	2
whyconserved	2
drosophila	2
histones	2
molecularbiologytools	2
bullshitarticles	2
of	2
3putr	2
polymorphism	2
networks	2
codingconservation	2
core	2
site-prediction	2
assayscisregwetlab	2
rearrangement	2
jshypotheses	2
prediction	2
protocols	2
hmm	1
doublets	1
books	1
nomotif	1
grns	1
bioinformatics	1
sites	1
olfactoryreceptors	1
fugu	1
dlx	1
fastindexing	1
degeneratesites	1
generegulatorynetworks	1
duplicatese	1
nucleosome	1
screening	1
smarts	1
word	1
ciona-gene-annotations	1
enhancer-contextanalysis	1
writing	1
intra-primate	1
gene_expression_databases	1
drosophia	1
element	1
genomeregulatoryblock	1
cns-enhancer	1
microarray-analysis	1
factorsclass	1
insertionsdeletions	1
statistics	1
kernel	1
primers	1
phylogenytools	1
igh	1
generalregulation	1
suppressor	1
positiveselection	1
transgenesis	1
purificationfromdna	1
genefamilyfootprinting	1
autoregulation	1
genemodels	1
cns-enhance	1
tr-reviews	1
noaccess	1
impossible	1
cisregdatabase	1
turnover	1
cns-difference	1
drosphila	1
decoy	1
applicationbioinf	1
pax6	1
cell-cultures	1
notconservedfunction	1
gibbs	1
arx	1
syntenypapers	1

maximilianh's Vingron:M [10 articles] Export Sort

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