maximilianh's 3dstructure [8 articles] Export

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	Connecting protein structure with predictions of regulatory sites [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 17. (24 April 2007), pp. 7068-7073. by Alexandre V. Morozov, Eric D. Siggia posted to 3dstructure site-prediction by maximilianh on 2009-03-23 16:34:54 as along with 7 people and 2 groups vingron nklee ana aalibes kaarsinogen johncumbers lusk structural_bioinformatics Bioinformatics
	Local DNA topography correlates with functional noncoding regions of the human genome. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5925. (17 April 2009), pp. 389-392. by Stephen C. Parker, Loren Hansen, Hatice Ozel O. Abaan, Thomas D. Tullius, Elliott H. Margulies posted to 3dstructure dna by maximilianh on 2009-03-17 21:13:54 as along with 40 people and 6 groups provero rsaito daveGerrard operon sujaikumar antonkratz pradiptaray roys gjuggler benjaminsb gdb hagechouchin443 tomtullius scjparker psique orzenil emptyhb ilyashl coela VGreiff APRegier myzhang pkonings akundaje athma absterga rpatward timflutre stajich bpcusack jbhiatt djkt dhlbh friendpine dpollard inesdesantiago JustinCrocker aprasad idonaldson kshundyak BergmanLab Mycology structural_bioinformatics RockmanLab EisenLab cis-regulatory-evolution
	Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites. [My Copy] Cell, Vol. 133, No. 7. (27 June 2008), pp. 1277-1289. by M. B. Noyes, R. G. Christensen, A. Wakabayashi, G. D. Stormo, M. H. Brodsky, S. A. Wolfe posted to 3dstructure factors recognition by maximilianh on 2008-12-12 09:45:16 as along with 6 people austin_mcdonald lusk maximilianh_otx emptyhb isimpson icq242500260
	Predicting transcription factor specificity with all-atom models. [My Copy] Nucleic acids research (1 October 2008) by Sahand Jamal J. Rahi, Peter Virnau, Leonid A A. Mirny, Mehran Kardar posted to 3dstructure factors by maximilianh on 2008-11-11 16:55:50 as along with 6 people Jporci chrn reyez lptolik zwang aalibes
	Global Chromatin Domain Organization of the Drosophila Genome [My Copy] PLoS Genet, Vol. 4, No. 3. (28 March 2008), e1000045. by Elzo de Wit, Ulrich Braunschweig, Frauke Greil, Harmen J. Bussemaker, Bas van Steensel posted to 3dstructure chromatin dna by maximilianh on 2008-05-07 15:55:50 as along with 4 people caseybrown emptyhb Garamonfok oelemento
	Determinants of a transcriptionally competent environment at the GM-CSF promoter [My Copy] Nucl. Acids Res., Vol. 36, No. 8. (1 May 2008), pp. 2639-2653. by K. H. Brettingham-Moore, O. R. Sprod, X. Chen, P. Oakford, M. F. Shannon, A. F. Holloway posted to 3dstructure chromatin histones promoter by maximilianh on 2008-05-06 15:25:04 as
	Connecting protein structure with predictions of regulatory sites. [My Copy] Proc Natl Acad Sci U S A (Apr 2007) by Alexandre Morozov, Eric Siggia posted to 3dstructure fromconnotea by maximilianh on 2007-09-23 12:59:10 as
	Connecting protein structure with predictions of regulatory sites [My Copy] Proceedings of the National Academy of Sciences, Vol. 104 (Apr 2007), pp. 7068-7073. by Alexandre Morozov, Eric Siggia posted to 3dstructure fromconnotea by maximilianh on 2007-09-23 12:59:10 as

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fromconnotea	411
motif	177
discovery	129
duplicates	59
scanning	57
enhancer	56
synteny	56
tandem	53
syntenypaper	52
enhancerprediction	43
molecularbiologytechniques	41
combination	36
cns-differences	34
factors	32
cns	32
geneorder	30
cross-species-enhancer	28
noalignment	28
wnt	26
review	24
ncrna	22
conserved	22
phylogenomics	21
phylogeny	19
chipchip	19
alignment	19
transcription	18
promoter	17
ultraconserved	17
repeated	16
notconserved	16
rennes	16
cis-trans	15
otx	15
whole	14
genome	14
pcr	14
enhancerpromotercompatibility	12
insulator	12
cluster	12
disease	11
websites	11
pwm	11
tools	11
randombreakage	10
chromatin	10
mirna	10
cns-ranking	10
ciona	10
pwmimprovement	10
cns-enhancer-screen	10
dna	9
cns-collaboration	9
promoters	8
pitx	8
genome-papers	8
3dstructure	8
cns-similarity	8
genomicregulatoryblocks	8
conservation	7
snp	7
genes	7
syntenytools	7
pwmcomparison	7
application	7
genomeregulatoryblocks	7
orthology	6
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promoterprediction	6
enhancer-screen	6
enhanceosome	6
long-range	6
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position	6
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similarity	5
structure	5
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enhancerdistances	5
chipseq	5
genecoregulation	5
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methylation	5
microrna	5
comparative	5
wholegenomescanning	4
comparison	4
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silencer	4
enhancersharing	4
interchromosomal	4
enhancer-prediction	4
antisensetranscription	4
otxpaper	4
interaction	4
recognition	4
footprinting	4
introns	4
competition	4
region	4
trainingset	3
mutations	3
regulatory	3
copy-number-variation	3
cionapopulationgenetics	3
rna-binding	3
ncrnas	3
regions	3
syntenyorientation	3
matrix	3
mirnaenhancer	3
model-species	3
replicationorigins	3
term_recognition	3
phylotypicstage	3
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of	2
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syntenypapers	1
generegulatorynetworks	1
degeneratesites	1
nucleosome	1
cell-cultures	1
enhancer-contextanalysis	1
duplicatese	1
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writing	1
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igh	1
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generalregulation	1
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word	1
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tr-reviews	1
noaccess	1
impossible	1
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cns-difference	1
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applicationbioinf	1
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notconservedfunction	1
gibbs	1
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