maximilianh's chipchip [17 articles] Export

Recent papers added to maximilianh's library classified by the tag chipchip. You can also see everyone's chipchip.

	Distinguishing direct versus indirect transcription factorâDNA interactions [My Copy] Genome Research, Vol. 19, No. 11. (3 November 2009), pp. 2090-2100. by Raluca GordÃ¢n, Alexander J. Hartemink, Martha L. Bulyk posted to chipchip by maximilianh on 2009-08-05 22:04:54 as along with 11 people oannes nklee djkt vingron venancio owhitney tmmurali emptyhb idonaldson jbhiatt frohike
	A Bayesian Hidden Markov Model for Motif Discovery Through Joint Modeling of Genomic Sequence and ChIP-Chip Data [My Copy] Biometrics, Vol. 9999, No. 9999. (2009) by Jonathan A. L. Gelfond, Mayetri Gupta, Joseph G. Ibrahim posted to chipchip discovery motif by maximilianh on 2009-02-16 11:11:16 as along with 2 people wowalz idonaldson
	Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif. [My Copy] Genome research (25 September 2008) by Yong Cheng, David C C. King, Louis C C. Dore, et al.Xinmin Zhang, Yuepin Zhou, Ying Zhang, Christine M M. Dorman, Demesew Abebe, Swathi A A. Kumar, Francesca Chiaromonte, Webb Miller, Roland D D. Green, Mitchell J J. Weiss, Ross C C. Hardison posted to chipchip chipseq conserved notconserved by maximilianh on 2008-10-07 09:31:26 as
	Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm. [My Copy] PLoS biology, Vol. 6, No. 2. (12 February 2008), e27. by X. Y. Li, S. MacArthur, R. Bourgon, et al.D. Nix, D. A. Pollard, V. N. Iyer, A. Hechmer, L. Simirenko, M. Stapleton, C. L. Luengo Hendriks, H. C. Chu, N. Ogawa, W. Inwood, V. Sementchenko, A. Beaton, R. Weiszmann, S. E. Celniker, D. W. Knowles, T. Gingeras, T. P. Speed, M. B. Eisen, M. D. Biggin posted to chipchip coding notconserved by maximilianh on 2008-02-16 17:47:48 as along with 8 people and 1 group gdb daveGerrard kengg caseybrown emptyhb brant isimpson Stew BergmanLab
	High-throughput Biochemical Analysis of in-vivo Location Data Reveals Novel Classes of POU5F1(Oct4)/DNA complexes. [My Copy] Genome Res (22 January 2008) by Dean Tantin, Matt Gemberling, Catherine Callister, Will Fairbrother posted to chipchip discovery enhanceosome motif by maximilianh on 2008-01-25 10:39:53 as along with 2 people caseybrown xingxu
	Integrating quantitative information from ChIP-chip experiments into motif finding. [My Copy] Biostatistics (28 May 2007) by Heejung Shim, Sündüz Keles posted to chipchip discovery motif by maximilianh on 2007-12-17 12:28:53 as along with 5 people and 1 group sebastien_vigneau bryankr kt kengg nklee Plantandetc
	Learning position weight matrices from sequence and expression data. [My Copy] Comput Syst Bioinformatics Conf, Vol. 6 (2007), pp. 249-260. by X. Chen, L. Guo, Z. Fan, T. Jiang posted to chipchip discovery motif by maximilianh on 2007-10-25 15:08:37 as
	Genomic mapping of Suppressor of Hairy-wing binding sites in Drosophila [My Copy] Genome Biology, Vol. 8 (16 August 2007), R167. by Boris Adryan, Gertrud Woerfel, Ian Birch-Machin, et al.Shan Gao, Marie Quick, Lisa Meadows, Steven Russell, Robert White posted to chipchip cns enhancer insulator by maximilianh on 2007-09-26 16:52:07 as
	A core transcriptional network for early mesoderm development in Drosophila melanogaster [My Copy] Genes and Development, Vol. 21 (Feb 2007), pp. 436-449. by Thomas Sandmann, Charles Girardot, Marc Brehme, Waraporn Tongprasit, Viktor Stolc, Eileen Furlong posted to chipchip fromconnotea by maximilianh on 2007-09-23 12:59:11 as
	Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. [My Copy] Nat Genet, Vol. 39 (Mar 2007), pp. 311-318. by Nathaniel Heintzman, Rhona Stuart, Gary Hon, et al.Yutao Fu, Christina Ching, R. Hawkins, Leah Barrera, Sara Van Calcar, Chunxu Qu, Keith Ching, Wei Wang, Zhiping Weng, Roland Green, Gregory Crawford, Bing Ren posted to chipchip fromconnotea by maximilianh on 2007-09-23 12:59:11 as
	Genomic characterization of Gli-activator targets in sonic hedgehog-mediated neural patterning. [My Copy] Development (Apr 2007) by Steven Vokes, Hongkai Ji, Scott Mccuine, et al.Toyoaki Tenzen, Shane Giles, Sheng Zhong, William Longabaugh, Eric Davidson, Wing Wong, Andrew Mcmahon posted to chipchip fromconnotea by maximilianh on 2007-09-23 12:59:10 as
	Serial analysis of binding elements for human transcription factors. [My Copy] Nature protocols, Vol. 1 (xx 2006), pp. 1481-1493. by Jiguo Chen posted to chipchip fromconnotea by maximilianh on 2007-09-23 12:59:10 as
	PREDICTION OF TRANSCRIPTION FACTOR BINDING SITES USING ChIP-chip AND PHYLOGENETIC FOOTPRINTING DATA. [My Copy] Journal of bioinformatics and computational biology, Vol. 5 (Feb 2007), pp. 105-116. by Markus Friberg posted to chipchip fromconnotea by maximilianh on 2007-09-23 12:59:10 as
	Discriminative discovery of transcription factor binding sites from location data. [My Copy] Proceedings / IEEE Computational Systems Bioinformatics Conference, CSB. IEEE Computational Systems Bioinformatics Conference (xx 2005), pp. 86-89. by Yuji Kawada, Yasubumi Sakakibara posted to chipchip fromconnotea by maximilianh on 2007-09-23 12:59:10 as
	Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo. [My Copy] Genes & development, Vol. 21 (Feb 2007), pp. 385-390. by Julia Zeitlinger, Robert Zinzen, Alexander Stark, et al.Manolis Kellis, Hailan Zhang, Richard Young, Michael Levine posted to chipchip fromconnotea by maximilianh on 2007-09-23 12:59:09 as
	Identification and analysis of functional elements in 1\% of the human genome by the ENCODE pilot project. [My Copy] Nature, Vol. 447 (Jun 2007), pp. 799-816. posted to chipchip fromconnotea by maximilianh on 2007-09-23 12:59:08 as
	A physical model for tiling array analysis -- Chung et al. 23 (13): i80 -- Bioinformatics [My Copy] posted to chipchip fromconnotea by maximilianh on 2007-09-23 12:59:04 as

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fromconnotea	411
motif	172
discovery	125
duplicates	59
scanning	57
synteny	56
enhancer	55
tandem	53
syntenypaper	52
enhancerprediction	43
molecularbiologytechniques	41
combination	36
cns-differences	34
factors	32
cns	31
geneorder	29
cross-species-enhancer	28
noalignment	28
wnt	26
review	23
ncrna	22
conserved	21
phylogenomics	21
alignment	19
phylogeny	18
transcription	18
chipchip	17
promoter	17
ultraconserved	17
notconserved	16
rennes	16
repeated	16
cis-trans	15
otx	15
genome	14
pcr	14
whole	14
cluster	12
enhancerpromotercompatibility	12
insulator	12
disease	11
pwm	11
tools	11
websites	11
chromatin	10
ciona	10
cns-enhancer-screen	10
cns-ranking	10
mirna	10
pwmimprovement	10
randombreakage	10
cns-collaboration	9
dna	9
3dstructure	8
cns-similarity	8
genome-papers	8
pitx	8
promoters	8
application	7
conservation	7
genes	7
genomeregulatoryblocks	7
genomicregulatoryblocks	7
pwmcomparison	7
syntenytools	7
bidirectionalpromoters	6
enhanceosome	6
enhancer-screen	6
enhancer-vertebrate-invertebrate	6
long-range	6
orthology	6
phenotype	6
position	6
promoterprediction	6
redundancy	6
snp	6
chipseq	5
comparative	5
enhancer-and-repeats	5
enhancerdistances	5
genecoregulation	5
methylation	5
microrna	5
similarity	5
structure	5
textmining	5
validated	5
antisensetranscription	4
comparison	4
competition	4
enhancersharing	4
expression	4
footprinting	4
interchromosomal	4
introns	4
otxpaper	4
recognition	4
region	4
silencer	4
wholegenomescanning	4
cionapopulationgenetics	3
coding	3
composition	3
copy-number-variation	3
encode	3
enhancerincodingregion	3
enhancer-prediction	3
evoluation	3
factorclass	3
genometrees	3
go	3
interaction	3
inter-cns-distances	3
matrix	3
mirnaenhancer	3
model-species	3
mutations	3
myarticles	3
ncrnas	3
phylotypicstage	3
promoter-minimal	3
regions	3
regulatory	3
rna-binding	3
syntenyorientation	3
term_recognition	3
tf	3
thermodynamicalmodels	3
trainingset	3
3putr	2
ascidians	2
assayscisregwetlab	2
binding	2
bullshitarticles	2
cellsortingbasedanalysis	2
ciona-gene-annotation	2
cns-database	2
codingconservation	2
core	2
drosophila	2
enhancer-stage-specificity	2
factorinteractions	2
genomiccontext	2
grn	2
histones	2
jshypotheses	2
mammals	2
microarray	2
molecularbiologytools	2
ncrna-long	2
networks	2
of	2
pituitary	2
pluripotency	2
polymorphism	2
prediction	2
protocols	2
pvalue-multiplicity	2
rearrangement	2
regulatory-flexibility	2
replicationorigins	2
site-prediction	2
spacing	2
strengthofmatch	2
tfsynergy	2
ultraconserveddefinition	2
whyconserved	2
applicationbioinf	1
arx	1
autoregulation	1
bioinformatics	1
books	1
cell-cultures	1
ciona-gene-annotations	1
cisregdatabase	1
cns-difference	1
cns-enhance	1
cns-enhancer	1
decoy	1
degeneratesites	1
dlx	1
doublets	1
drosophia	1
drosphila	1
duplicatese	1
element	1
enhancer-contextanalysis	1
factorsclass	1
fastindexing	1
fugu	1
genefamilyfootprinting	1
genemodels	1
generalregulation	1
generegulatorynetworks	1
gibbs	1
grns	1
hmm	1
igh	1
impossible	1
insertionsdeletions	1
intra-primate	1
kernel	1
noaccess	1
nomotif	1
notconservedfunction	1
nucleosome	1
olfactoryreceptors	1
pax6	1
phylogenytools	1
positiveselection	1
primers	1
purificationfromdna	1
sites	1
smarts	1
statistics	1
suppressor	1
syntenypapers	1
transgenesis	1
tr-reviews	1
turnover	1
word	1
writing	1

maximilianh's chipchip [17 articles] Export

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