maximilianh's cluster [12 articles] Export

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	Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions [My Copy] Genome Biology, Vol. 10, No. 7. (23 July 2009), R80. by Stewart MacArthur, Xiao Y. Li, Jingyi Li, et al.James Brown, Hou C. Chu, Lucy Zeng, Brandi Grondona, Aaron Hechmer, Lisa Simirenko, Soile Keranen, David Knowles, Mark Stapleton, Peter Bickel, Mark Biggin, Michael Eisen posted to cluster combination by maximilianh on 2009-07-28 17:57:22 as along with 12 people and 2 groups bsamal venancio aalibes fenghezi idonaldson daveGerrard megraw scjparker djkt isimpson Stew druvus BergmanLab Bioinformatics - CRUK
	TFBScluster web server for the identification of mammalian composite regulatory elements [My Copy] Nucleic Acids Res In Nucl. Acids Res., Vol. 34, No. suppl_2. (1 July 2006), pp. W524-528. by Ian J. Donaldson, Berthold Gottgens posted to cluster scanning by maximilianh on 2009-04-02 16:47:32 as along with 2 people bsamal idonaldson
	Identification of sparsely distributed clusters of cis-regulatory elements in sets of co-expressed genes. [My Copy] Nucleic acids research, Vol. 32, No. 9. (2004), pp. 2889-2900. by G. Kreiman posted to cluster by maximilianh on 2009-04-02 16:45:42 as along with 1 person nuin
	Homotypic regulatory clusters in Drosophila. [My Copy] Genome Res, Vol. 13, No. 4. (April 2003), pp. 579-588. by A. P. Lifanov, V. J. Makeev, A. G. Nazina, D. A. Papatsenko posted to cluster combination motif by maximilianh on 2009-04-02 16:27:21 as along with 3 people and 1 group isimpson indigoviolet tresch EisenLab
	The SV40 enhancer contains two distinct levels of organization. [My Copy] Nature, Vol. 333, No. 6168. (5 May 1988), pp. 40-45. by B. Ondek, L. Gloss, W. Herr posted to cluster by maximilianh on 2008-11-26 13:56:33 as along with 1 person maximilianh_otx
	Functional Architecture and Evolution of Transcriptional Elements That Drive Gene Coexpression [My Copy] Science, Vol. 317, No. 5844. (14 September 2007), pp. 1557-1560. by Christopher D. Brown, David S. Johnson, Arend Sidow posted to ciona cis-trans cluster cns-differences combination enhanceosome pwm by maximilianh on 2008-02-29 17:27:57 as along with 10 people and 2 groups pradiptaray dpollard djkt joepickrell zwang Garamonfok Stew mimulus_99 cisevol emptyhb EisenLab cis-regulatory-evolution
	Prediction of synergistic transcription factors by function conservation [My Copy] Genome Biology, Vol. 8, No. 12. (2007) by Zihua Hu, Boyu Hu, James Collins posted to cluster factors noalignment tfsynergy transcription by maximilianh on 2007-12-08 15:12:16 as along with 3 people and 1 group cjeans nklee ale cis-regulatory-evolution
	Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (09 November 2007), 437. by Xueping Yu, Jimmy Lin, Donald Zack, Jiang Qian posted to cluster motif by maximilianh on 2007-11-16 17:48:33 as along with 10 people roys isimpson guhjy chad_davis mikaelhuss nklee idonaldson njcitulike bootsy snow_dragon
	TREMOR a tool for retrieving transcriptional modules by incorporating motif covariance [My Copy] Nucl. Acids Res. In Nucl. Acids Res., Vol. 35, No. 21. (18 December 2007), pp. 7360-7371. by Larry N. Singh, Li-San Wang, Sridhar Hannenhalli posted to cluster motif pwmcomparison scanning by maximilianh on 2007-10-27 23:30:07 as along with 2 people bsamal tmmurali
	Modeling DNA-binding of Escherichia coli sigma70 exhibits a characteristic energy landscape around strong promoters [My Copy] Nucl. Acids Res. (16 October 2007), gkm720. by Johanna Weindl, Pavol Hanus, Zaher Dawy, Juergen Zech, Joachim Hagenauer, Jakob C. Mueller posted to cluster by maximilianh on 2007-10-23 18:50:11 as along with 3 people and 1 group jjray operon dpollard EisenLab
	A clustering property of highly-degenerate transcription factor binding sites in the mammalian genome. [My Copy] Nucleic Acids Res, Vol. 34, No. 8. (2006), pp. 2238-2246. by C. Zhang, Z. Xuan, S. Otto, et al.J. R. Hover, S. R. McCorkle, G. Mandel, M. Q. Zhang posted to cluster by maximilianh on 2007-10-10 09:40:54 as along with 4 people and 2 groups polivares gpalidwor emptyhb Auger BergmanLab Dead 60's
	Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo. [My Copy] BMC bioinformatics, Vol. 3 (Oct 2002), pp. 30-30. by Nikolaus Rajewsky, Massimo Vergassola, Ulrike Gaul, Eric Siggia posted to cluster scanning fromconnotea by maximilianh on 2007-09-23 12:59:15 as

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fromconnotea	411
motif	174
discovery	127
duplicates	59
scanning	57
synteny	56
enhancer	55
tandem	53
syntenypaper	52
enhancerprediction	43
molecularbiologytechniques	41
combination	36
cns-differences	34
factors	32
cns	31
geneorder	30
cross-species-enhancer	28
noalignment	28
wnt	26
review	23
ncrna	22
phylogenomics	21
conserved	21
alignment	19
chipchip	19
phylogeny	18
transcription	18
promoter	17
ultraconserved	17
notconserved	16
repeated	16
rennes	16
cis-trans	15
otx	15
whole	14
genome	14
pcr	14
enhancerpromotercompatibility	12
insulator	12
cluster	12
tools	11
pwm	11
websites	11
disease	11
randombreakage	10
mirna	10
ciona	10
cns-ranking	10
chromatin	10
pwmimprovement	10
cns-enhancer-screen	10
dna	9
cns-collaboration	9
genome-papers	8
promoters	8
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3dstructure	8
genomicregulatoryblocks	8
pitx	8
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syntenytools	7
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conservation	7
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snp	6
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position	6
enhanceosome	6
promoterprediction	6
enhancer-vertebrate-invertebrate	6
bidirectionalpromoters	6
redundancy	6
comparative	5
methylation	5
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genecoregulation	5
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similarity	5
textmining	5
chipseq	5
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structure	5
microrna	5
footprinting	4
recognition	4
comparison	4
introns	4
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otxpaper	4
expression	4
antisensetranscription	4
interaction	4
ncrnas	3
phylotypicstage	3
copy-number-variation	3
go	3
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regulatory	3
thermodynamicalmodels	3
regions	3
coding	3
matrix	3
mutations	3
model-species	3
mirnaenhancer	3
promoter-minimal	3
cionapopulationgenetics	3
genometrees	3
rna-binding	3
term_recognition	3
tf	3
evoluation	3
inter-cns-distances	3
composition	3
factorclass	3
trainingset	3
syntenyorientation	3
myarticles	3
encode	3
ascidians	2
whyconserved	2
polymorphism	2
ultraconserveddefinition	2
binding	2
3putr	2
of	2
cellsortingbasedanalysis	2
histones	2
replicationorigins	2
drosophila	2
cns-database	2
codingconservation	2
pluripotency	2
tfsynergy	2
bullshitarticles	2
strengthofmatch	2
networks	2
mammals	2
ciona-gene-annotation	2
regulatory-flexibility	2
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enhancer-stage-specificity	2
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assayscisregwetlab	2
factorinteractions	2
spacing	2
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core	2
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protocols	2
pituitary	2
grn	2
syntenypapers	1
coexpression	1
microarray-analysis	1
arx	1
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smarts	1
word	1
factorsclass	1
genomeregulatoryblock	1
cell-cultures	1
degeneratesites	1
bioinformatics	1
drosphila	1
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positiveselection	1
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element	1
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duplicatese	1
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grns	1
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hmm	1
pax6	1
tr-reviews	1
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books	1
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writing	1
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kernel	1
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igh	1
suppressor	1
genemodels	1
noaccess	1
cisregdatabase	1
ciona-gene-annotations	1
enhancer-contextanalysis	1
nucleosome	1

maximilianh's cluster [12 articles] Export

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