maximilianh's cns-similarity [8 articles] Export

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	One thousand and one ways of making functionally similar transcriptional enhancers. [My Copy] BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 30, No. 11-12. (November 2008), pp. 1052-1057. by R. A. Veitia posted to cns-differences cns-similarity by maximilianh on 2008-12-17 22:40:21 as along with 1 person coldmeadow
	Human-specific gain of function in a developmental enhancer. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5894. (5 September 2008), pp. 1346-1350. by Shyam Prabhakar, Axel Visel, Jennifer A. Akiyama, et al.Malak Shoukry, Keith D. Lewis, Amy Holt, Ingrid Plajzer-Frick, Harris Morrison, David R. Fitzpatrick, Veena Afzal, Len A. Pennacchio, Edward M. Rubin, James P. Noonan posted to cns-differences cns-similarity mutations notconserved by maximilianh on 2008-09-05 10:48:07 as along with 14 people and 1 group paulrigor Annab jfr Stew shoshin bpcusack emptyhb Zephyrus sebastien_vigneau djkt natstreet isimpson caseybrown eskay Roswell Cancer Crosstalk
	Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation [My Copy] PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106. by Emily E. Hare, Brant K. Peterson, Venky N. Iyer, Rudolf Meier, Michael B. Eisen posted to cns-differences cns-similarity combination composition cross-species-enhancer drosophila noalignment notconserved by maximilianh on 2008-09-05 10:47:36 as along with 8 people and 2 groups lusk Stew emptyhb djkt stajich pradiptaray cisevol caseybrown Mycology cis-regulatory-evolution
	Determining physical constraints in transcriptional initiation complexes using DNA sequence analysis. [My Copy] PLoS ONE, Vol. 2, No. 11. (2007) by R. K. Shultzaberger, D. Y. Chiang, A. M. Moses, M. B. Eisen posted to cns-similarity combination pwm by maximilianh on 2008-08-25 15:03:56 as
	MOPAT: a graph-based method to predict recurrent cis-regulatory modules from known motifs [My Copy] Nucl. Acids Res. (7 July 2008), gkn407. by Jianfei Hu, Haiyan Hu, Xiaoman Li posted to cns-similarity combination motif noalignment scanning by maximilianh on 2008-07-07 17:15:10 as along with 2 people fenghezi wowalz
	The words of the regulatory code are arranged in a variable manner in highly conserved enhancers. [My Copy] Developmental biology, Vol. 318, No. 2. (15 June 2008), pp. 366-377. by Sepand Rastegar, Isabell Hess, Thomas Dickmeis, et al.Jean Christophe C. Nicod, Raymond Ertzer, Yavor Hadzhiev, Wolf-Gerolf G. Thies, Gerd Scherer, Uwe Strähle posted to cns-differences cns-enhancer-screen cns-similarity core notconserved by maximilianh on 2008-05-06 23:57:24 as along with 3 people and 1 group lusk brant cisevol cis-regulatory-evolution
	Short sequence motifs, overrepresented in mammalian conserved non-coding sequences. [My Copy] BMC genomics, Vol. 8 (18 October 2007), 378. by Simon Minovitsky, Philip Stegmaier, Alexander Kel, Alexey S. Kondrashov, Inna Dubchak posted to cns cns-similarity by maximilianh on 2007-10-23 16:22:38 as
	A statistical method for alignment-free comparison of regulatory sequences. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 13. (1 July 2007), pp. i249-255. by Miriam R. Kantorovitz, Gene E. Robinson, Saurabh Sinha posted to trainingset noalignment cns-similarity cns-differences by maximilianh on 2007-09-25 15:13:07 as along with 2 people and 1 group CharlesM cisevol cis-regulatory-evolution

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fromconnotea	411
motif	169
discovery	122
duplicates	59
scanning	57
enhancer	55
synteny	54
tandem	53
syntenypaper	52
enhancerprediction	43
molecularbiologytechniques	41
combination	36
cns-differences	34
factors	32
cns	31
geneorder	29
cross-species-enhancer	27
noalignment	27
wnt	26
review	23
ncrna	22
conserved	21
phylogenomics	21
alignment	19
phylogeny	18
transcription	18
chipchip	17
promoter	17
ultraconserved	17
notconserved	16
rennes	16
repeated	16
otx	15
cis-trans	14
genome	14
pcr	14
whole	14
cluster	12
enhancerpromotercompatibility	12
insulator	12
disease	11
pwm	11
chromatin	10
ciona	10
cns-enhancer-screen	10
cns-ranking	10
mirna	10
pwmimprovement	10
randombreakage	10
websites	10
cns-collaboration	9
dna	9
tools	9
3dstructure	8
cns-similarity	8
genome-papers	8
pitx	8
promoters	8
application	7
conservation	7
genes	7
genomeregulatoryblocks	7
genomicregulatoryblocks	7
pwmcomparison	7
bidirectionalpromoters	6
enhanceosome	6
enhancer-screen	6
enhancer-vertebrate-invertebrate	6
long-range	6
orthology	6
phenotype	6
position	6
promoterprediction	6
redundancy	6
snp	6
syntenytools	6
comparative	5
enhancer-and-repeats	5
enhancerdistances	5
genecoregulation	5
methylation	5
microrna	5
similarity	5
structure	5
textmining	5
validated	5
antisensetranscription	4
chipseq	4
comparison	4
competition	4
enhancersharing	4
expression	4
footprinting	4
interchromosomal	4
introns	4
otxpaper	4
recognition	4
region	4
silencer	4
wholegenomescanning	4
cionapopulationgenetics	3
coding	3
composition	3
copy-number-variation	3
encode	3
enhancerincodingregion	3
evoluation	3
factorclass	3
genometrees	3
go	3
interaction	3
inter-cns-distances	3
matrix	3
mirnaenhancer	3
model-species	3
mutations	3
myarticles	3
ncrnas	3
phylotypicstage	3
promoter-minimal	3
regions	3
regulatory	3
rna-binding	3
syntenyorientation	3
term_recognition	3
tf	3
thermodynamicalmodels	3
trainingset	3
3putr	2
ascidians	2
assayscisregwetlab	2
binding	2
bullshitarticles	2
cellsortingbasedanalysis	2
ciona-gene-annotation	2
cns-database	2
core	2
drosophila	2
enhancer-prediction	2
enhancer-stage-specificity	2
factorinteractions	2
genomiccontext	2
grn	2
histones	2
jshypotheses	2
mammals	2
microarray	2
molecularbiologytools	2
ncrna-long	2
networks	2
of	2
pituitary	2
pluripotency	2
polymorphism	2
prediction	2
protocols	2
pvalue-multiplicity	2
rearrangement	2
regulatory-flexibility	2
replicationorigins	2
site-prediction	2
spacing	2
strengthofmatch	2
tfsynergy	2
ultraconserveddefinition	2
whyconserved	2
applicationbioinf	1
arx	1
autoregulation	1
bioinformatics	1
books	1
cell-cultures	1
ciona-gene-annotations	1
cisregdatabase	1
cns-difference	1
cns-enhance	1
cns-enhancer	1
codingconservation	1
decoy	1
degeneratesites	1
dlx	1
doublets	1
drosophia	1
drosphila	1
duplicatese	1
element	1
enhancer-contextanalysis	1
factorsclass	1
fastindexing	1
fugu	1
genefamilyfootprinting	1
genemodels	1
generalregulation	1
generegulatorynetworks	1
gibbs	1
grns	1
hmm	1
igh	1
impossible	1
insertionsdeletions	1
intra-primate	1
kernel	1
noaccess	1
nomotif	1
notconservedfunction	1
nucleosome	1
olfactoryreceptors	1
pax6	1
phylogenytools	1
positiveselection	1
primers	1
purificationfromdna	1
sites	1
smarts	1
statistics	1
suppressor	1
syntenypapers	1
transgenesis	1
tr-reviews	1
turnover	1
word	1
writing	1

maximilianh's cns-similarity [8 articles] Export

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