maximilianh's cns-differences [34 articles] Export

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	Conserved regulatory sequences in Atoh7 mediate non-conserved regulatory responses in retina ontogenesis. [My Copy] Development (Cambridge, England), Vol. 136, No. 22. (November 2009), pp. 3767-3777. by Dorota Skowronska-Krawczyk, Florence Chiodini, Martin Ebeling, et al.Christine Alliod, Adam Kundzewicz, Diogo Castro, Marc Ballivet, François Guillemot, Lidia Matter-Sadzinski, Jean-Marc M. Matter posted to notconservedfunction notconserved cns-differences by maximilianh on 2009-11-03 15:57:07 as along with 1 person emptyhb
	Organization of developmental enhancers in the Drosophila embryo [My Copy] Nucl. Acids Res., Vol. 37, No. 17. (1 September 2009), pp. 5665-5677. by Dmitri Papatsenko, Yury Goltsev, Michael Levine posted to cns-differences combination enhancerprediction noalignment notconserved regulatory-flexibility by maximilianh on 2009-08-05 22:03:48 as along with 3 people and 1 group inesdesantiago bmajoros al2na Journal picks
	Big Genomes Facilitate the Comparative Identification of Regulatory Elements [My Copy] PLoS ONE, Vol. 4, No. 3. (4 March 2009), e4688. by Brant K. Peterson, Emily E. Hare, Venky N. Iyer, et al.Steven Storage, Laura Conner, Daniel R. Papaj, Rick Kurashima, Eric Jang, Michael B. Eisen posted to cns-differences conservation cross-species-enhancer inter-cns-distances by maximilianh on 2009-03-10 13:55:36 as along with 8 people and 2 groups natstreet lusk dpollard JustinCrocker daveGerrard emmahe trfield idoerg RockmanLab BergmanLab
	One thousand and one ways of making functionally similar transcriptional enhancers. [My Copy] BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 30, No. 11-12. (November 2008), pp. 1052-1057. by R. A. Veitia posted to cns-differences cns-similarity by maximilianh on 2008-12-17 22:40:21 as along with 1 person coldmeadow
	Functional importance of evolutionally conserved Tbx6 binding sites in the presomitic mesoderm-specific enhancer of Mesp2. [My Copy] Development (Cambridge, England), Vol. 135, No. 21. (November 2008), pp. 3511-3519. by Y. Yasuhiko, S. Kitajima, Y. Takahashi, et al.M. Oginuma, H. Kagiwada, J. Kanno, Y. Saga posted to cns-differences cross-species-enhancer by maximilianh on 2008-10-16 09:20:00 as along with 1 person agonzale
	Human-specific gain of function in a developmental enhancer. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5894. (5 September 2008), pp. 1346-1350. by Shyam Prabhakar, Axel Visel, Jennifer A. Akiyama, et al.Malak Shoukry, Keith D. Lewis, Amy Holt, Ingrid Plajzer-Frick, Harris Morrison, David R. Fitzpatrick, Veena Afzal, Len A. Pennacchio, Edward M. Rubin, James P. Noonan posted to cns-differences cns-similarity mutations notconserved by maximilianh on 2008-09-05 10:48:07 as along with 14 people and 1 group paulrigor Annab jfr Stew shoshin bpcusack emptyhb Zephyrus sebastien_vigneau djkt natstreet isimpson caseybrown eskay Roswell Cancer Crosstalk
	Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation [My Copy] PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106. by Emily E. Hare, Brant K. Peterson, Venky N. Iyer, Rudolf Meier, Michael B. Eisen posted to cns-differences cns-similarity combination composition cross-species-enhancer drosophila noalignment notconserved by maximilianh on 2008-09-05 10:47:36 as along with 8 people and 2 groups lusk Stew emptyhb djkt stajich pradiptaray cisevol caseybrown Mycology cis-regulatory-evolution
	Selective Constraints in Experimentally Defined Primate Regulatory Regions [My Copy] PLoS Genet, Vol. 4, No. 8. (2008), e1000157. by Daniel J. Gaffney, Ran Blekhman, Jacek Majewski posted to cns-differences positiveselection by maximilianh on 2008-08-18 09:17:40 as along with 10 people and 2 groups daveGerrard xianjun madreach alhufton djkt bpcusack aprasad pradiptaray caseybrown cisevol BergmanLab cis-regulatory-evolution
	Subfunctionalization of Duplicated Zebrafish pax6 Genes by cis-Regulatory Divergence [My Copy] PLoS Genetics, Vol. 4, No. 2. (1 February 2008), e29. by Dirk A. Kleinjan, Ruth M. Bancewicz, Philippe Gautier, et al.Ralf Dahm, Helia B. Schonthaler, Giuseppe Damante, Anne Seawright, Ann M. Hever, Patricia L. Yeyati, Veronica van Heyningen, Pedro Coutinho posted to cns-differences duplicates synteny tandem by maximilianh on 2008-06-05 23:41:15 as along with 5 people JustinCrocker brant gjuggler emptyhb Stew
	The words of the regulatory code are arranged in a variable manner in highly conserved enhancers. [My Copy] Developmental biology, Vol. 318, No. 2. (15 June 2008), pp. 366-377. by Sepand Rastegar, Isabell Hess, Thomas Dickmeis, et al.Jean Christophe C. Nicod, Raymond Ertzer, Yavor Hadzhiev, Wolf-Gerolf G. Thies, Gerd Scherer, Uwe Strähle posted to cns-differences cns-enhancer-screen cns-similarity core notconserved by maximilianh on 2008-05-06 23:57:24 as along with 3 people and 1 group lusk brant cisevol cis-regulatory-evolution
	Conserved non-coding sequences and transcriptional regulation. [My Copy] Brain Res Bull, Vol. 75, No. 2-4. (18 March 2008), pp. 225-230. by U. Strähle, S. Rastegar posted to cns-differences notconserved whyconserved by maximilianh on 2008-03-13 13:51:43 as
	The Evolution of Combinatorial Gene Regulation in Fungi [My Copy] PLoS Biol, Vol. 6, No. 2. (26 February 2008), e38. by Brian B. Tuch, David J. Galgoczy, Aaron D. Hernday, Hao Li, Alexander D. Johnson posted to cns-differences cross-species-enhancer notconserved by maximilianh on 2008-03-01 21:12:57 as along with 5 people kiekyon fenghezi emptyhb lusk tmmurali
	Functional Architecture and Evolution of Transcriptional Elements That Drive Gene Coexpression [My Copy] Science, Vol. 317, No. 5844. (14 September 2007), pp. 1557-1560. by Christopher D. Brown, David S. Johnson, Arend Sidow posted to ciona cis-trans cluster cns-differences combination enhanceosome pwm by maximilianh on 2008-02-29 17:27:57 as along with 10 people and 2 groups pradiptaray dpollard djkt joepickrell zwang Garamonfok Stew mimulus_99 cisevol emptyhb EisenLab cis-regulatory-evolution
	Evolutionary plasticity of developmental gene regulatory network architecture [My Copy] Proceedings of the National Academy of Sciences (27 November 2007), 0709994104. by Veronica F. Hinman, Eric H. Davidson posted to cns-differences generegulatorynetworks grns by maximilianh on 2007-12-02 21:20:58 as along with 3 people tmmurali zwang roys
	Frequent gain and loss of functional transcription factor binding sites. [My Copy] PLoS computational biology, Vol. 3, No. 5. (1 May 2007), e99. by Scott W. Doniger, Justin C. Fay posted to cns-differences by maximilianh on 2007-11-08 17:50:54 as along with 12 people and 2 groups roys fenghezi lusk JustinCrocker pradiptaray brant dpollard sebastien_vigneau zwang cisevol xili03 emptyhb EisenLab cis-regulatory-evolution
	Divergence of Transcription Factor Binding Sites Across Related Yeast Species [My Copy] Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819. by Anthony R. Borneman, Tara A. Gianoulis, Zhengdong D. Zhang, et al.Haiyuan Yu, Joel Rozowsky, Michael R. Seringhaus, Lu Y. Wang, Mark Gerstein, Michael Snyder posted to cns-differences by maximilianh on 2007-11-08 17:50:25 as along with 22 people and 2 groups pradiptaray gdb fenghezi dbensasson caseybrown bryankr aalibes chad_davis dpollard djkt mikaelhuss lusk cjeans sujaikumar zwang GustavoLacerda Jporci cisevol njcitulike emptyhb nklee anka EisenLab cis-regulatory-evolution
	Tissue-specific transcriptional regulation has diverged significantly between human and mouse. [My Copy] Nature genetics, Vol. 39, No. 6. (21 June 2007), pp. 730-732. by Duncan T. Odom, Robin D. Dowell, Elizabeth S. Jacobsen, et al.William Gordon, Timothy W. Danford, Kenzie D. MacIsaac, P. Alexander Rolfe, Caitlin M. Conboy, David K. Gifford, Ernest Fraenkel posted to cns-differences by maximilianh on 2007-11-08 17:49:04 as along with 13 people and 4 groups vingron ajaymalik fenghezi dpollard gpalidwor dchughes cwbrown djkt cjeans fpattyn caseybrown yevishere gdb EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution
	Large-scale turnover of functional transcription factor binding sites in Drosophila. [My Copy] PLoS Comput Biol, Vol. 2, No. 10. (October 2006) by A. M. Moses, D. A. Pollard, D. A. Nix, et al.V. N. Iyer, X. Y. Li, M. D. Biggin, M. B. Eisen posted to cns-differences by maximilianh on 2007-11-08 17:48:58 as along with 6 people and 2 groups caseybrown adepace eukfn lusk cisevol emptyhb EisenLab cis-regulatory-evolution
	Ancient duplicated conserved noncoding elements in vertebrates: A genomic and functional analysis. [My Copy] Genome Res (13 March 2006) by Gayle K K. McEwen, Adam Woolfe, Debbie Goode, Tanya Vavouri, Heather Callaway, Greg Elgar posted to cns cns-differences duplicates by maximilianh on 2007-10-08 13:35:01 as along with 4 people and 3 groups dpollard dchughes tabu sujaikumar EisenLab G4ID Genetics-of-Gambling
	A statistical method for alignment-free comparison of regulatory sequences. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 13. (1 July 2007), pp. i249-255. by Miriam R. Kantorovitz, Gene E. Robinson, Saurabh Sinha posted to trainingset noalignment cns-similarity cns-differences by maximilianh on 2007-09-25 15:13:07 as along with 2 people and 1 group CharlesM cisevol cis-regulatory-evolution
	Transgenic analysis of Dlx regulation in fish tooth development reveals evolutionary retention of enhancer function despite organ loss. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103 (Dec 2006), pp. 19390-19395. by William Jackman, David Stock posted to cns-differences fromconnotea by maximilianh on 2007-09-23 12:59:11 as
	Plasticity of the cis-Regulatory Input Function of a Gene [My Copy] PLoS Biology, Vol. 4 (Apr 2006) by Avraham Mayo, Yaakov Setty, Seagull Shavit, Alon Zaslaver, Uri Alon posted to cns-differences fromconnotea by maximilianh on 2007-09-23 12:59:11 as
	A novel element regulates expression of the proximal human proglucagon promoter in islet cells. [My Copy] General and comparative endocrinology, Vol. 151 (Apr 2007), pp. 230-239. by Brian Tsai, Shijun Yue, David Irwin posted to cns-differences fromconnotea by maximilianh on 2007-09-23 12:59:09 as
	Evolution at two levels in humans and chimpanzees. [My Copy] Science (New York, N.Y.), Vol. 188 (Apr 1975), pp. 107-116. by M. C. King, A. C. Wilson posted to cns-differences fromconnotea by maximilianh on 2007-09-23 12:59:08 as
	Frequent gain and loss of functional transcription factor binding sites. [My Copy] PLoS computational biology, Vol. 3 (May 2007), pp. 99-99. by Scott Doniger, Justin Fay posted to cns-differences fromconnotea by maximilianh on 2007-09-23 12:59:08 as
	Tissue-specific transcriptional regulation has diverged significantly between human and mouse. [My Copy] Nat Genet (May 2007) by Duncan Odom, Robin Dowell, Elizabeth Jacobsen, et al.William Gordon, Timothy Danford, Kenzie Macisaac, P. Rolfe, Caitlin Conboy, David Gifford, Ernest Fraenkel posted to cns-differences fromconnotea by maximilianh on 2007-09-23 12:59:08 as
	Shuffling of cis-regulatory elements is a pervasive feature of the vertebrate lineage. [My Copy] Genome biology, Vol. 7 (xx 2006), pp. 56-56. by Remo Sanges, Eva Kalmar, Pamela Claudiani, Maria D'Amato, Ferenc Muller, Elia Stupka posted to cns-differences fromconnotea by maximilianh on 2007-09-23 12:59:08 as
	Whole-Genome Cartography of Estrogen Receptor alpha Binding Sites. [My Copy] PLoS Genet, Vol. 3 (Jun 2007), pp. 87-87. by Chin Y. Lin, Vinsensius Vega, Jane Thomsen, et al.Tao Zhang, Say Kong, Min Xie, Kuo Chiu, Leonard Lipovich, Daniel Barnett, Fabio Stossi, Ailing Yeo, Joshy George, Vladimir Kuznetsov, Yew Lee, Tze Charn, Nallasivam Palanisamy, Lance Miller, Edwin Cheung, Benita Katzenellenbogen, Yijun Ruan, Guillaume Bourque, Chia L. Wei, Edison Liu posted to cns-differences fromconnotea by maximilianh on 2007-09-23 12:59:08 as
	Identifying pattern-defined regulatory islands in mammalian genomes [My Copy] Proceedings of the National Academy of Sciences, Vol. 104 (Jun 2007), pp. 10116-10121. by Tom Cheung, Kristen Barthel, Yin Kwan, Xuedong Liu posted to cns-differences fromconnotea by maximilianh on 2007-09-23 12:59:08 as
	Cis-regulation of the amphioxus engrailed gene: Insights into evolution of a muscle-specific enhancer. [My Copy] Mech Dev (Jun 2007) by Laura B. Jones, Michael Schubert, Linda Holland posted to cns-differences fromconnotea by maximilianh on 2007-09-23 12:59:05 as
	Divergent Evolution of Human p53 Binding Sites: Cell Cycle Versus Apoptosis [My Copy] PLoS Genetics, Vol. 3 (Jul 2007), pp. 127-127. by Monica Horvath, Xuting Wang, Michael Resnick, Douglas Bell posted to cns-differences fromconnotea by maximilianh on 2007-09-23 12:59:04 as
	EVOLUTION: An Embarrassment of Switches [My Copy] Science, Vol. 317 (Aug 2007), pp. 758-759. by Leonid Kruglyak, David Stern posted to cns-differences fromconnotea by maximilianh on 2007-09-23 12:59:02 as
	Morphological evolution through multiple cis-regulatory mutations at a single gene [My Copy] Nature, Vol. 448 (Aug 2007), pp. 587-590. by Alistair Mcgregor, Virginie Orgogozo, Isabelle Delon, et al.Jennifer Zanet, Dayalan Srinivasan, Francois Payre, David Stern posted to cns-differences fromconnotea by maximilianh on 2007-09-23 12:59:02 as
	Tissue-specific transcriptional regulation has diverged significantly between human and mouse. [My Copy] Nature genetics, Vol. 39 (Jun 2007), pp. 730-732. by Duncan Odom, Robin Dowell, Elizabeth Jacobsen, et al.William Gordon, Timothy Danford, Kenzie Macisaac, P. Rolfe, Caitlin Conboy, David Gifford, Ernest Fraenkel posted to cns-differences fromconnotea by maximilianh on 2007-09-23 12:59:02 as

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fromconnotea	411
motif	171
discovery	124
duplicates	59
scanning	57
synteny	56
enhancer	55
tandem	53
syntenypaper	52
enhancerprediction	43
molecularbiologytechniques	41
combination	36
cns-differences	34
factors	32
cns	31
geneorder	29
cross-species-enhancer	28
noalignment	28
wnt	26
review	23
ncrna	22
conserved	21
phylogenomics	21
alignment	19
phylogeny	18
transcription	18
chipchip	17
promoter	17
ultraconserved	17
notconserved	16
rennes	16
repeated	16
cis-trans	15
otx	15
genome	14
pcr	14
whole	14
cluster	12
enhancerpromotercompatibility	12
insulator	12
disease	11
pwm	11
tools	11
websites	11
chromatin	10
ciona	10
cns-enhancer-screen	10
cns-ranking	10
mirna	10
pwmimprovement	10
randombreakage	10
cns-collaboration	9
dna	9
3dstructure	8
cns-similarity	8
genome-papers	8
pitx	8
promoters	8
application	7
conservation	7
genes	7
genomeregulatoryblocks	7
genomicregulatoryblocks	7
pwmcomparison	7
syntenytools	7
bidirectionalpromoters	6
enhanceosome	6
enhancer-screen	6
enhancer-vertebrate-invertebrate	6
long-range	6
orthology	6
phenotype	6
position	6
promoterprediction	6
redundancy	6
snp	6
comparative	5
enhancer-and-repeats	5
enhancerdistances	5
genecoregulation	5
methylation	5
microrna	5
similarity	5
structure	5
textmining	5
validated	5
antisensetranscription	4
chipseq	4
comparison	4
competition	4
enhancersharing	4
expression	4
footprinting	4
interchromosomal	4
introns	4
otxpaper	4
recognition	4
region	4
silencer	4
wholegenomescanning	4
cionapopulationgenetics	3
coding	3
composition	3
copy-number-variation	3
encode	3
enhancerincodingregion	3
enhancer-prediction	3
evoluation	3
factorclass	3
genometrees	3
go	3
interaction	3
inter-cns-distances	3
matrix	3
mirnaenhancer	3
model-species	3
mutations	3
myarticles	3
ncrnas	3
phylotypicstage	3
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regions	3
regulatory	3
rna-binding	3
syntenyorientation	3
term_recognition	3
tf	3
thermodynamicalmodels	3
trainingset	3
3putr	2
ascidians	2
assayscisregwetlab	2
binding	2
bullshitarticles	2
cellsortingbasedanalysis	2
ciona-gene-annotation	2
cns-database	2
codingconservation	2
core	2
drosophila	2
enhancer-stage-specificity	2
factorinteractions	2
genomiccontext	2
grn	2
histones	2
jshypotheses	2
mammals	2
microarray	2
molecularbiologytools	2
ncrna-long	2
networks	2
of	2
pituitary	2
pluripotency	2
polymorphism	2
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rearrangement	2
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replicationorigins	2
site-prediction	2
spacing	2
strengthofmatch	2
tfsynergy	2
ultraconserveddefinition	2
whyconserved	2
applicationbioinf	1
arx	1
autoregulation	1
bioinformatics	1
books	1
cell-cultures	1
ciona-gene-annotations	1
cisregdatabase	1
cns-difference	1
cns-enhance	1
cns-enhancer	1
decoy	1
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dlx	1
doublets	1
drosophia	1
drosphila	1
duplicatese	1
element	1
enhancer-contextanalysis	1
factorsclass	1
fastindexing	1
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gibbs	1
grns	1
hmm	1
igh	1
impossible	1
insertionsdeletions	1
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kernel	1
noaccess	1
nomotif	1
notconservedfunction	1
nucleosome	1
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pax6	1
phylogenytools	1
positiveselection	1
primers	1
purificationfromdna	1
sites	1
smarts	1
statistics	1
suppressor	1
syntenypapers	1
transgenesis	1
tr-reviews	1
turnover	1
word	1
writing	1

maximilianh's cns-differences [34 articles] Export

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