maximilianh's conservation [7 articles] Export

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	Distinct class of putative ânon-conservedâ promoters in humans: Comparative studies of alternative promoters of human and mouse genes [My Copy] Genome Research, Vol. 17, No. 7. (1 July 2007), pp. 1005-1014. by Katsuki Tsuritani, Takuma Irie, Riu Yamashita, et al.Yuta Sakakibara, Hiroyuki Wakaguri, Akinori Kanai, Junko Mizushima-Sugano, Sumio Sugano, Kenta Nakai, Yutaka Suzuki posted to promoter conservation by maximilianh on 2009-09-20 01:11:22 as along with 7 people and 2 groups nickluscombe djkt cabbagezs toshiaki_katayama kmdaily antonkratz cisevol EBI-regulation cis-regulatory-evolution
	Evolution of Transcription Factor Binding Sites in Mammalian Gene Regulatory Regions: Handling Counterintuitive Results [My Copy] Journal of Molecular Evolution by James Balmer, Rune Blomhoff posted to conservation notconserved by maximilianh on 2009-06-02 00:14:59 as along with 3 people and 1 group leemond31 cisevol nuin cis-regulatory-evolution
	Sampling motifs on phylogenetic trees. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 27. (5 July 2005), pp. 9481-9486. by X. Li, W. H. Wong posted to conservation discovery by maximilianh on 2009-04-02 09:41:04 as
	Genome-wide discovery of functional transcription factor binding sites by comparative genomics: The case of Stat3 [My Copy] Proceedings of the National Academy of Sciences (12 March 2009) by Francesco Vallania, Davide Schiavone, Sarah Dewilde, et al.Emanuela Pupo, Serge Garbay, Raffaele Calogero, Marco Pontoglio, Paolo Provero, Valeria Poli posted to conservation enhancerprediction scanning by maximilianh on 2009-03-17 17:55:40 as along with 2 people idonaldson merpublic
	Alignment and Prediction of cis-Regulatory Modules Based on a Probabilistic Model of Evolution [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (13 March 2009), e1000299. by Xin He, Xu Ling, Saurabh Sinha posted to conservation noalignment by maximilianh on 2009-03-16 16:14:17 as along with 9 people roys megraw lusk TRHvidsten kieran101 nuin djkt mhamada druvus
	Big Genomes Facilitate the Comparative Identification of Regulatory Elements [My Copy] PLoS ONE, Vol. 4, No. 3. (4 March 2009), e4688. by Brant K. Peterson, Emily E. Hare, Venky N. Iyer, et al.Steven Storage, Laura Conner, Daniel R. Papaj, Rick Kurashima, Eric Jang, Michael B. Eisen posted to cns-differences conservation cross-species-enhancer inter-cns-distances by maximilianh on 2009-03-10 13:55:36 as along with 8 people and 2 groups natstreet lusk dpollard JustinCrocker daveGerrard emmahe trfield idoerg RockmanLab BergmanLab
	CompMoby: comparative MobyDick for detection of cis-regulatory motifs. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Christina Chaivorapol, Collin Melton, Grace Wei, et al.Ru-Fang F. Yeh, Miguel Ramalho-Santos, Robert Blelloch, Hao Li posted to comparative conservation discovery motif by maximilianh on 2008-10-28 12:55:52 as along with 5 people guhjy heliopais djkt xili03 druvus

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fromconnotea	411
motif	178
discovery	130
duplicates	59
scanning	57
enhancer	56
synteny	56
tandem	53
syntenypaper	52
enhancerprediction	43
molecularbiologytechniques	41
combination	36
cns-differences	34
cns	32
factors	32
geneorder	30
noalignment	28
cross-species-enhancer	28
wnt	26
review	24
ncrna	22
conserved	22
phylogenomics	21
phylogeny	20
chipchip	19
alignment	19
transcription	18
ultraconserved	17
promoter	17
repeated	16
rennes	16
notconserved	16
otx	15
cis-trans	15
pcr	14
whole	14
genome	14
enhancerpromotercompatibility	13
cluster	12
insulator	12
tools	12
pwm	11
disease	11
websites	11
randombreakage	10
pwmimprovement	10
cns-enhancer-screen	10
mirna	10
ciona	10
chromatin	10
cns-ranking	10
cns-collaboration	9
dna	9
promoters	8
pitx	8
genomicregulatoryblocks	8
genome-papers	8
3dstructure	8
cns-similarity	8
snp	7
pwmcomparison	7
application	7
conservation	7
genes	7
syntenytools	7
promoterprediction	7
genomeregulatoryblocks	7
position	6
long-range	6
enhanceosome	6
orthology	6
phenotype	6
textmining	6
enhancer-vertebrate-invertebrate	6
bidirectionalpromoters	6
redundancy	6
enhancer-screen	6
structure	5
similarity	5
expression	5
microrna	5
comparative	5
chipseq	5
validated	5
enhancerdistances	5
methylation	5
genecoregulation	5
enhancer-and-repeats	5
footprinting	4
enhancer-prediction	4
recognition	4
interaction	4
wholegenomescanning	4
enhancersharing	4
enhancerincodingregion	4
interchromosomal	4
otxpaper	4
silencer	4
antisensetranscription	4
energy_model	4
region	4
competition	4
comparison	4
introns	4
go	3
term_recognition	3
genometrees	3
copy-number-variation	3
encode	3
trainingset	3
tf	3
evoluation	3
inter-cns-distances	3
factorclass	3
composition	3
model-species	3
syntenyorientation	3
matrix	3
coding	3
myarticles	3
regions	3
mutations	3
phylotypicstage	3
mirnaenhancer	3
regulatory	3
cionapopulationgenetics	3
replicationorigins	3
rna-binding	3
ncrnas	3
promoter-minimal	3
thermodynamicalmodels	3
pluripotency	2
cns-database	2
binding	2
jshypotheses	2
ultraconserveddefinition	2
factorinteractions	2
grn	2
regulatory-flexibility	2
ciona-gene-annotation	2
spacing	2
coexpression	2
ncrna-long	2
strengthofmatch	2
cellsortingbasedanalysis	2
enhancer-stage-specificity	2
mammals	2
pvalue-multiplicity	2
pituitary	2
whyconserved	2
prediction	2
tfsynergy	2
drosophila	2
microarray	2
molecularbiologytools	2
histones	2
of	2
3putr	2
polymorphism	2
bullshitarticles	2
networks	2
codingconservation	2
core	2
site-prediction	2
assayscisregwetlab	2
rearrangement	2
genomiccontext	2
ascidians	2
protocols	2
doublets	1
books	1
genefamilyfootprinting	1
pax6	1
intra-primate	1
syntenypapers	1
olfactoryreceptors	1
fugu	1
decoy	1
fastindexing	1
enhancer-contextanalysis	1
hmm	1
nomotif	1
element	1
screening	1
gene_expression_databases	1
purificationfromdna	1
sites	1
dlx	1
writing	1
nucleosome	1
word	1
drosophia	1
genomeregulatoryblock	1
duplicatese	1
microarray-analysis	1
factorsclass	1
cns-enhancer	1
insertionsdeletions	1
positiveselection	1
kernel	1
primers	1
arx	1
autoregulation	1
igh	1
statistics	1
cell-cultures	1
suppressor	1
cns-enhance	1
generalregulation	1
ciona-gene-annotations	1
smarts	1
tr-reviews	1
transgenesis	1
impossible	1
genemodels	1
turnover	1
cns-difference	1
applicationbioinf	1
drosphila	1
noaccess	1
grns	1
cisregdatabase	1
phylogenytools	1
notconservedfunction	1
gibbs	1
bioinformatics	1
generegulatorynetworks	1
degeneratesites	1