maximilianh's conserved [21 articles] Export

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	COMPUTATIONAL METHODS FOR IDENTIFYING AND CHARACTERIZING THE HUMAN GENE REGULATORY REGIONS AND CIS -ELEMENTS [My Copy] by W. Huang posted to conserved discovery motif regulatory by maximilianh on 2009-05-15 16:54:53 as
	Embryonic epsilon and gamma globin genes of a prosimian primate (Galago crassicaudatus). Nucleotide and amino acid sequences, developmental regulation and phylogenetic footprints. [My Copy] Journal of molecular biology, Vol. 203, No. 2. (20 September 1988), pp. 439-455. by D. A. Tagle, B. F. Koop, M. Goodman, J. L. Slightom, D. L. Hess, R. T. Jones posted to comparative conserved footprinting by maximilianh on 2009-04-23 14:08:28 as
	Evolutionary Conserved Motif Finder (ECMFinder) for genome-wide identification of clustered YY1- and CTCF-binding sites [My Copy] Nucl. Acids Res. (10 February 2009), gkp077. by Keunsoo Kang, Jae H. Chung, Joomyeong Kim posted to conserved discovery motif by maximilianh on 2009-02-11 09:49:19 as along with 3 people idonaldson nklee wowalz
	CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008), 495. by Matthew S. Hestand, Michiel van Galen, Michel P. Villerius, Gert-Jan J. van Ommen, Johan T. den Dunnen, Peter A. 't Hoen posted to conserved motif scanning tools websites by maximilianh on 2008-11-27 09:21:41 as along with 9 people and 1 group farhat avilella heliopais lptolik nklee nuin GustavoLacerda natstreet druvus Ensembl Compara citations
	Combining phylogenetic data with co-regulated genes to identify regulatory motifs. [My Copy] Bioinformatics, Vol. 19, No. 18. (12 December 2003), pp. 2369-2380. by T. Wang, G. D. Stormo posted to conserved discovery motif pwmcomparison by maximilianh on 2008-10-28 17:27:48 as along with 5 people coldmeadow balajis eckart_bindewald dquest natstreet
	Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif. [My Copy] Genome research (25 September 2008) by Yong Cheng, David C C. King, Louis C C. Dore, et al.Xinmin Zhang, Yuepin Zhou, Ying Zhang, Christine M M. Dorman, Demesew Abebe, Swathi A A. Kumar, Francesca Chiaromonte, Webb Miller, Roland D D. Green, Mitchell J J. Weiss, Ross C C. Hardison posted to chipchip chipseq conserved notconserved by maximilianh on 2008-10-07 09:31:26 as
	ConTra: a promoter alignment analysis tool for identification of transcription factor binding sites across species [My Copy] Nucl. Acids Res. (3 May 2008), gkn195. by Bart Hooghe, Paco Hulpiau, Frans van Roy, Pieter De Bleser posted to alignment conserved motif promoter by maximilianh on 2008-05-06 15:56:53 as along with 4 people isimpson idonaldson maralena guhjy
	Using PhyloCon to identify conserved regulatory motifs. [My Copy] Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.], Vol. Chapter 2 (September 2007) by T. Wang posted to conserved discovery motif by maximilianh on 2008-04-24 08:42:26 as
	In vivo enhancer analysis of human conserved non-coding sequences [My Copy] Nature by Len A. Pennacchio, Nadav Ahituv, Alan M. Moses, et al.Shyam Prabhakar, Marcelo A. Nobrega, Malak Shoukry, Simon Minovitsky, Inna Dubchak, Amy Holt, Keith D. Lewis, Ingrid Plajzer-Frick, Jennifer Akiyama, Sarah De Val, Veena Afzal, Brian L. Black, Olivier Couronne, Michael B. Eisen, Axel Visel, Edward M. Rubin posted to conserved enhancerprediction by maximilianh on 2008-02-29 17:30:33 as along with 5 people maximilianh_otx cisstem cckan heliopais gjuggler
	Computation-based discovery of related transcriptional regulatory modules and motifs using an experimentally validated combinatorial model. [My Copy] Genome Res, Vol. 12, No. 7. (July 2002), pp. 1019-1028. by M. S. Halfon, Y. Grad, G. M. Church, A. M. Michelson posted to combination conserved enhancerprediction motif scanning by maximilianh on 2008-02-29 13:02:28 as along with 2 people maximilianh_otx isimpson
	Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 10. (2007), S2. by Xiaoyu Chen, Mathieu Blanchette posted to conserved enhancerprediction by maximilianh on 2008-02-28 09:48:55 as along with 2 people jxl roys
	A Caenorhabditis motif compendium for studying transcriptional gene regulation [My Copy] BMC Genomics, Vol. 9 (23 January 2008), 30. by Christoph Dieterich, Ralf J. Sommer posted to conserved discovery motif whole by maximilianh on 2008-01-26 10:23:21 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites [My Copy] PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e7. by Daniela Raijman, Ron Shamir, Amos Tanay posted to conserved cross-species-enhancer evoluation noalignment by maximilianh on 2008-01-17 08:14:34 as along with 8 people and 1 group marck xili03 aalibes sebastien_vigneau lusk Garamonfok nklee emptyhb BioinfoCIPF
	Fine-Tuning Enhancer Models to Predict Transcriptional Targets across Multiple Genomes. [My Copy] PLoS ONE, Vol. 2, No. 11. (2007) by S. Aerts, J. van Helden, O. Sand, B. A. Hassan posted to cns conserved drosophila enhancerprediction scanning by maximilianh on 2007-12-08 15:34:13 as along with 5 people and 1 group operon brant idonaldson barwil isimpson cis-regulatory-evolution
	Comparative Genomics-Based Orthologous Promoter Analysis Using the DoOP Database and the DoOPSearch Web Tool. [My Copy] Methods Mol Biol, Vol. 395 (2007), pp. 319-328. by E. Barta posted to alignment conserved footprinting scanning by maximilianh on 2007-11-27 13:04:18 as
	Vertebrate conserved non coding DNA regions have a high persistence length and a short persistence time [My Copy] BMC Genomics, Vol. 8, No. 1. (2007) by Dorota Retelska, Emmanuel Beaudoing, Cedric Notredame, Victor C. Jongeneel, Philipp Bucher posted to cns conserved by maximilianh on 2007-11-06 08:09:34 as along with 2 people and 1 group sujaikumar cisevol cis-regulatory-evolution
	Multiple conserved regulatory elements with overlapping functions determine Sox10 expression in mouse embryogenesis. [My Copy] Nucleic Acids Res (26 September 2007) by Torsten Werner, Alexander Hammer, Mandy Wahlbuhl, Michael R R. Bösl, Michael Wegner posted to conserved enhancer by maximilianh on 2007-10-02 14:47:41 as along with 1 person brant
	Identification of novel Regulatory Factor X (RFX) target genes by comparative genomics in Drosophila species [My Copy] Genome Biology, Vol. 8 (17 September 2007), R195. by Anne C. Laurencon, Raphaelle Dubruille, Evgeni Efimenko, et al.Guillaume Grenier, Ryan E. Bissett, Elisabeth Cortier, Vivien Rolland, Peter Swoboda, Benedicte Durand posted to cns conserved genome scanning by maximilianh on 2007-09-26 18:30:23 as along with 3 people and 1 group isimpson thegoose2 tharris C. elegans / WormBase
	Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes. [My Copy] BMC genomics, Vol. 5 (xx 2004), pp. 99-99. by Albin Sandelin, Peter Bailey, Sara Bruce, et al.Pär Engström, Joanna Klos, Wyeth Wasserman, Johan Ericson, Boris Lenhard posted to conserved fromconnotea genomicregulatoryblocks ultraconserved by maximilianh on 2007-09-23 12:59:15 as
	Identification of Cis-regulatory elements in the mouse Pax9/Nkx2-9 genomic region: implication for evolutionary conserved synteny. [My Copy] Genetics, Vol. 165 (Sep 2003), pp. 235-242. by Fabio Santagati, Kuniya Abe, Volker Schmidt, et al.Thomas S. John, Misao Suzuki, Ken I. Yamamura, Kenji Imai posted to conserved regions fromconnotea by maximilianh on 2007-09-23 12:59:15 as
	Integrating transcription factor binding site information with gene expression datasets -- Jeffery et al. 23 (3): 298 -- Bioinformatics [My Copy] posted to conserved regions fromconnotea by maximilianh on 2007-09-23 12:59:12 as

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fromconnotea	411
motif	169
discovery	122
duplicates	59
scanning	57
enhancer	55
synteny	54
tandem	53
syntenypaper	52
enhancerprediction	43
molecularbiologytechniques	41
combination	36
cns-differences	34
factors	32
cns	31
geneorder	29
cross-species-enhancer	27
noalignment	27
wnt	26
review	23
ncrna	22
conserved	21
phylogenomics	21
alignment	19
phylogeny	18
transcription	18
chipchip	17
promoter	17
ultraconserved	17
notconserved	16
rennes	16
repeated	16
otx	15
cis-trans	14
genome	14
pcr	14
whole	14
cluster	12
enhancerpromotercompatibility	12
insulator	12
disease	11
pwm	11
chromatin	10
ciona	10
cns-enhancer-screen	10
cns-ranking	10
mirna	10
pwmimprovement	10
randombreakage	10
websites	10
cns-collaboration	9
dna	9
tools	9
3dstructure	8
cns-similarity	8
genome-papers	8
pitx	8
promoters	8
application	7
conservation	7
genes	7
genomeregulatoryblocks	7
genomicregulatoryblocks	7
pwmcomparison	7
bidirectionalpromoters	6
enhanceosome	6
enhancer-screen	6
enhancer-vertebrate-invertebrate	6
long-range	6
orthology	6
phenotype	6
position	6
promoterprediction	6
redundancy	6
snp	6
syntenytools	6
comparative	5
enhancer-and-repeats	5
enhancerdistances	5
genecoregulation	5
methylation	5
microrna	5
similarity	5
structure	5
textmining	5
validated	5
antisensetranscription	4
chipseq	4
comparison	4
competition	4
enhancersharing	4
expression	4
footprinting	4
interchromosomal	4
introns	4
otxpaper	4
recognition	4
region	4
silencer	4
wholegenomescanning	4
cionapopulationgenetics	3
coding	3
composition	3
copy-number-variation	3
encode	3
enhancerincodingregion	3
evoluation	3
factorclass	3
genometrees	3
go	3
interaction	3
inter-cns-distances	3
matrix	3
mirnaenhancer	3
model-species	3
mutations	3
myarticles	3
ncrnas	3
phylotypicstage	3
promoter-minimal	3
regions	3
regulatory	3
rna-binding	3
syntenyorientation	3
term_recognition	3
tf	3
thermodynamicalmodels	3
trainingset	3
3putr	2
ascidians	2
assayscisregwetlab	2
binding	2
bullshitarticles	2
cellsortingbasedanalysis	2
ciona-gene-annotation	2
cns-database	2
core	2
drosophila	2
enhancer-prediction	2
enhancer-stage-specificity	2
factorinteractions	2
genomiccontext	2
grn	2
histones	2
jshypotheses	2
mammals	2
microarray	2
molecularbiologytools	2
ncrna-long	2
networks	2
of	2
pituitary	2
pluripotency	2
polymorphism	2
prediction	2
protocols	2
pvalue-multiplicity	2
rearrangement	2
regulatory-flexibility	2
replicationorigins	2
site-prediction	2
spacing	2
strengthofmatch	2
tfsynergy	2
ultraconserveddefinition	2
whyconserved	2
applicationbioinf	1
arx	1
autoregulation	1
bioinformatics	1
books	1
cell-cultures	1
ciona-gene-annotations	1
cisregdatabase	1
cns-difference	1
cns-enhance	1
cns-enhancer	1
codingconservation	1
decoy	1
degeneratesites	1
dlx	1
doublets	1
drosophia	1
drosphila	1
duplicatese	1
element	1
enhancer-contextanalysis	1
factorsclass	1
fastindexing	1
fugu	1
genefamilyfootprinting	1
genemodels	1
generalregulation	1
generegulatorynetworks	1
gibbs	1
grns	1
hmm	1
igh	1
impossible	1
insertionsdeletions	1
intra-primate	1
kernel	1
noaccess	1
nomotif	1
notconservedfunction	1
nucleosome	1
olfactoryreceptors	1
pax6	1
phylogenytools	1
positiveselection	1
primers	1
purificationfromdna	1
sites	1
smarts	1
statistics	1
suppressor	1
syntenypapers	1
transgenesis	1
tr-reviews	1
turnover	1
word	1
writing	1

maximilianh's conserved [21 articles] Export

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