maximilianh's cross-species-enhancer [27 articles] Export

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	Identification of regulatory elements in the Isl1 gene locus. [My Copy] The International journal of developmental biology, Vol. 53, No. 7. (2009), pp. 935-946. by Claudia Kappen, J. Michael Salbaum posted to cross-species-enhancer by maximilianh on 2009-10-20 13:44:09 as
	Conservation of core gene expression in vertebrate tissues [My Copy] Journal of Biology, Vol. 8, No. 3. (16 April 2009), 33. by Esther Chan, Gerald Quon, Gordon Chua, et al.Tomas Babak, Miles Trochesset, Ralph Zirngibl, Jane Aubin, Michael Ratcliffe, Andrew Wilde, Michael Brudno, Quaid Morris, Timothy Hughes posted to phylotypicstage expression cross-species-enhancer by maximilianh on 2009-08-25 17:24:38 as along with 4 people grahamc gdb robfsouza dswan
	Conservation of sequence and function in the Pax6 regulatory elements. [My Copy] Trends in genetics : TIG, Vol. 20, No. 7. (July 2004), pp. 283-287. by R. Morgan posted to cross-species-enhancer by maximilianh on 2009-05-25 10:11:09 as
	Big Genomes Facilitate the Comparative Identification of Regulatory Elements [My Copy] PLoS ONE, Vol. 4, No. 3. (4 March 2009), e4688. by Brant K. Peterson, Emily E. Hare, Venky N. Iyer, et al.Steven Storage, Laura Conner, Daniel R. Papaj, Rick Kurashima, Eric Jang, Michael B. Eisen posted to cns-differences conservation cross-species-enhancer inter-cns-distances by maximilianh on 2009-03-10 13:55:36 as along with 8 people and 2 groups natstreet lusk dpollard JustinCrocker daveGerrard emmahe trfield idoerg RockmanLab BergmanLab
	Functional diversification of sonic hedgehog paralog enhancers identified by phylogenomic reconstruction [My Copy] Genome Biology, Vol. 8 (08 June 2007), R106. by Yavor Hadzhiev, Michael Lang, Raymond Ertzer, Axel Meyer, Uwe Straehle, Ferenc Mueller posted to cns-difference cross-species-enhancer by maximilianh on 2009-01-06 15:26:35 as along with 4 people and 2 groups jochenG dpollard cjeans cisevol EisenLab cis-regulatory-evolution
	Multigenome DNA sequence conservation identifies Hox cis-regulatory elements. [My Copy] Genome research, Vol. 18, No. 12. (3 December 2008), pp. 1955-1968. by Steven G. Kuntz, Erich M. Schwarz, John A. DeModena, et al.Tristan De Buysscher, Diane Trout, Hiroaki Shizuya, Paul W. Sternberg, Barbara J. Wold posted to cross-species-enhancer enhancer-vertebrate-invertebrate enhancerdistances enhancerprediction noalignment by maximilianh on 2008-12-02 15:49:37 as along with 1 person rshe
	Patterning the ascidian nervous system: structure, expression and transgenic analysis of the CiHox3 gene. [My Copy] Development (Cambridge, England), Vol. 126, No. 21. (November 1999), pp. 4737-4748. by A. Locascio, F. Aniello, A. Amoroso, M. Manzanares, R. Krumlauf, M. Branno posted to cross-species-enhancer enhancer-vertebrate-invertebrate by maximilianh on 2008-10-24 18:23:57 as
	Functional importance of evolutionally conserved Tbx6 binding sites in the presomitic mesoderm-specific enhancer of Mesp2. [My Copy] Development (Cambridge, England), Vol. 135, No. 21. (November 2008), pp. 3511-3519. by Y. Yasuhiko, S. Kitajima, Y. Takahashi, et al.M. Oginuma, H. Kagiwada, J. Kanno, Y. Saga posted to cns-differences cross-species-enhancer by maximilianh on 2008-10-16 09:20:00 as along with 1 person agonzale
	Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation [My Copy] PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106. by Emily E. Hare, Brant K. Peterson, Venky N. Iyer, Rudolf Meier, Michael B. Eisen posted to cns-differences cns-similarity combination composition cross-species-enhancer drosophila noalignment notconserved by maximilianh on 2008-09-05 10:47:36 as along with 8 people and 2 groups lusk Stew emptyhb djkt stajich pradiptaray cisevol caseybrown Mycology cis-regulatory-evolution
	The Otx binding site is required for the activation of HpOtxL mRNA expression in the sea urchin, Hemicentrotus pulcherrimus. [My Copy] Development, growth & differentiation, Vol. 46, No. 1. (February 2004), pp. 61-67. by Y. Hayashibara, K. Mitsunaga-Nakatsubo, N. Sakamoto, T. Shimotori, K. Akasaka, T. Yamamoto posted to cross-species-enhancer enhancer-vertebrate-invertebrate by maximilianh on 2008-05-09 16:02:38 as
	Acetylated YY1 regulates Otx2 expression in anterior neuroectoderm at two cis-sites 90 kb apart [My Copy] The EMBO Journal, Vol. aop, No. current. (01 March 2007) by Nobuyoshi Takasaki, Daisuke Kurokawa, Rika Nakayama, Jun-Ichi Nakayama, Shinichi Aizawa posted to cross-species-enhancer enhancer-vertebrate-invertebrate by maximilianh on 2008-05-09 15:58:56 as
	ReXSpecies--a tool for the analysis of the evolution of gene regulation across species. [My Copy] BMC evolutionary biology, Vol. 8 (14 April 2008), 111. by Stephan Struckmann, Marcos J. Araúzo-Bravo, Hans R. Schöler, Rolland A. Reinbold, Georg Fuellen posted to alignment cross-species-enhancer motif by maximilianh on 2008-04-16 22:32:02 as along with 3 people and 1 group isimpson sim82 cisevol cis-regulatory-evolution
	A functional survey of the enhancer activity of conserved non-coding sequences from vertebrate Iroquois cluster gene deserts [My Copy] Genome Res., Vol. 15, No. 8. (1 August 2005), pp. 1061-1072. by de La, Carmen G. Feijoo, Miguel Manzanares, et al.Juan J. Tena, Elisa Rodriguez-Seguel, Annalisa Letizia, Miguel L. Allende, Jose L. Gomez-Skarmeta posted to cns-enhancer-screen cross-species-enhancer by maximilianh on 2008-04-07 15:59:50 as
	Cis-regulatory organization of the Pax6 gene in the ascidian Ciona intestinalis. [My Copy] Developmental biology (13 February 2008) by Steven Q Q. Irvine, Vera C C. Fonseca, Michael A A. Zompa, Rajee Antony posted to cross-species-enhancer by maximilianh on 2008-04-07 15:46:57 as
	Functional tests of enhancer conservation between distantly related species [My Copy] Development, Vol. 130, No. 21. (1 November 2003), pp. 5133-5142. by Ilya Ruvinsky, Gary Ruvkun posted to cross-species-enhancer by maximilianh on 2008-04-07 15:45:23 as along with 5 people and 2 groups thegoose2 tharris mikaelhuss cisevol emptyhb C. elegans / WormBase cis-regulatory-evolution
	Functional analysis of the sea urchin-derived arylsulfatase (Ars)-element in mammalian cells. [My Copy] Genes to cells : devoted to molecular & cellular mechanisms, Vol. 11, No. 9. (September 2006), pp. 1009-1021. by S. Watanabe, S. Watanabe, N. Sakamoto, M. Sato, K. Akasaka posted to cross-species-enhancer by maximilianh on 2008-04-07 15:43:40 as
	Conservation of RET Regulatory Function from Human to Zebrafish Without Sequence Similarity. [My Copy] Science (23 March 2006) by Shannon Fisher, Elizabeth A A. Grice, Ryan M M. Vinton, Seneca L L. Bessling, Andrew S S. McCallion posted to cns-enhancer-screen cross-species-enhancer notconserved by maximilianh on 2008-04-07 15:40:21 as along with 5 people and 3 groups aprasad adepace nickluscombe cisevol emptyhb EisenLab EBI-regulation cis-regulatory-evolution
	The Evolution of Combinatorial Gene Regulation in Fungi [My Copy] PLoS Biol, Vol. 6, No. 2. (26 February 2008), e38. by Brian B. Tuch, David J. Galgoczy, Aaron D. Hernday, Hao Li, Alexander D. Johnson posted to cns-differences cross-species-enhancer notconserved by maximilianh on 2008-03-01 21:12:57 as along with 5 people kiekyon fenghezi emptyhb lusk tmmurali
	Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites [My Copy] PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e7. by Daniela Raijman, Ron Shamir, Amos Tanay posted to conserved cross-species-enhancer evoluation noalignment by maximilianh on 2008-01-17 08:14:34 as along with 8 people and 1 group marck xili03 aalibes sebastien_vigneau lusk Garamonfok nklee emptyhb BioinfoCIPF
	Functional and bioinformatics analyses reveal conservation of cis-regulatory elements between sciaridae and drosophilidae. [My Copy] Genesis, Vol. 46, No. 1. (14 January 2008), pp. 43-51. by Matheus S S. Lecci, Tathiane M M. Malta, Vinícius T T. Flausino, Daniel L G L. Gitaí, Jerônimo C C. Ruiz, Nadia Monesi posted to cross-species-enhancer by maximilianh on 2008-01-17 08:11:24 as
	Identifying cis-regulatory elements by statistical analysis and phylogenetic footprinting and analyzing their coexistence and related gene ontology [My Copy] Physiol. Genomics, Vol. 31, No. 3. (14 November 2007), pp. 374-384. by Wei Shi, Wanlei Zhou, Dakang Xu posted to cross-species-enhancer discovery motif by maximilianh on 2007-11-15 16:53:04 as
	Transcriptional Regulation of Pituitary POMC Is Conserved at the Vertebrate Extremes Despite Great Promoter Sequence Divergence [My Copy] Mol Endocrinol, Vol. 21, No. 11. (1 November 2007), pp. 2738-2749. by Viviana F. Bumaschny, Flavio S. de Souza, Lopez, et al.Andrea M. Santangelo, Manfred Baetscher, Diego H. Levi, Malcolm J. Low, Marcelo Rubinstein posted to cross-species-enhancer enhancer noalignment pituitary by maximilianh on 2007-10-27 12:07:13 as along with 1 person and 1 group cisevol cis-regulatory-evolution
	Long-range downstream enhancers are essential for Pax6 expression. [My Copy] Dev Biol, Vol. 299, No. 2. (15 November 2006), pp. 563-581. by D. A. Kleinjan, A. Seawright, S. Mella, et al.C. B. Carr, D. A. Tyas, T. I. Simpson, J. O. Mason, D. J. Price, V. van Heyningen posted to cross-species-enhancer enhancer by maximilianh on 2007-10-08 11:14:03 as
	Functional analysis of the chicken {delta}1-crystallin enhancer activity in Drosophila reveals remarkable evolutionary conservation between chicken and fly -- Blanco et al. 132 (8): 1895 -- Development [My Copy] posted to cross-species-enhancer fromconnotea by maximilianh on 2007-09-23 12:59:13 as
	Functional analysis of the sea urchin-derived arylsulfatase (Ars)-element in mammalian cells. [My Copy] Genes to cells : devoted to molecular & cellular mechanisms, Vol. 11 (Sep 2006), pp. 1009-1021. by Satoshi Watanabe, Sachiko Watanabe, Naoaki Sakamoto, Masahiro Sato, Koji Akasaka posted to cross-species-enhancer fromconnotea by maximilianh on 2007-09-23 12:59:13 as
	Schnurri transcription factors from Drosophila and vertebrates can mediate Bmp signaling through a phylogenetically conserved mechanism. [My Copy] Development (Cambridge, England), Vol. 133 (Oct 2006), pp. 4025-4034. by Li C. Yao, Ira Blitz, Daniel Peiffer, et al.Sopheap Phin, Ying Wang, Souichi Ogata, Ken Cho, Kavita Arora, Rahul Warrior posted to cross-species-enhancer fromconnotea by maximilianh on 2007-09-23 12:59:13 as
	Functional tests of enhancer conservation between distantly related species -- Ruvinsky and Ruvkun 130 (21): 5133 -- Development [My Copy] posted to cross-species-enhancer fromconnotea by maximilianh on 2007-09-23 12:59:13 as

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fromconnotea	411
motif	170
discovery	123
duplicates	59
scanning	57
enhancer	55
synteny	54
tandem	53
syntenypaper	52
enhancerprediction	43
molecularbiologytechniques	41
combination	36
cns-differences	34
factors	32
cns	31
geneorder	29
cross-species-enhancer	27
noalignment	27
wnt	26
review	23
ncrna	22
conserved	21
phylogenomics	21
alignment	19
phylogeny	18
transcription	18
chipchip	17
promoter	17
ultraconserved	17
notconserved	16
rennes	16
repeated	16
otx	15
cis-trans	14
genome	14
pcr	14
whole	14
cluster	12
enhancerpromotercompatibility	12
insulator	12
disease	11
pwm	11
chromatin	10
ciona	10
cns-enhancer-screen	10
cns-ranking	10
mirna	10
pwmimprovement	10
randombreakage	10
websites	10
cns-collaboration	9
dna	9
tools	9
3dstructure	8
cns-similarity	8
genome-papers	8
pitx	8
promoters	8
application	7
conservation	7
genes	7
genomeregulatoryblocks	7
genomicregulatoryblocks	7
pwmcomparison	7
bidirectionalpromoters	6
enhanceosome	6
enhancer-screen	6
enhancer-vertebrate-invertebrate	6
long-range	6
orthology	6
phenotype	6
position	6
promoterprediction	6
redundancy	6
snp	6
syntenytools	6
comparative	5
enhancer-and-repeats	5
enhancerdistances	5
genecoregulation	5
methylation	5
microrna	5
similarity	5
structure	5
textmining	5
validated	5
antisensetranscription	4
chipseq	4
comparison	4
competition	4
enhancersharing	4
expression	4
footprinting	4
interchromosomal	4
introns	4
otxpaper	4
recognition	4
region	4
silencer	4
wholegenomescanning	4
cionapopulationgenetics	3
coding	3
composition	3
copy-number-variation	3
encode	3
enhancerincodingregion	3
evoluation	3
factorclass	3
genometrees	3
go	3
interaction	3
inter-cns-distances	3
matrix	3
mirnaenhancer	3
model-species	3
mutations	3
myarticles	3
ncrnas	3
phylotypicstage	3
promoter-minimal	3
regions	3
regulatory	3
rna-binding	3
syntenyorientation	3
term_recognition	3
tf	3
thermodynamicalmodels	3
trainingset	3
3putr	2
ascidians	2
assayscisregwetlab	2
binding	2
bullshitarticles	2
cellsortingbasedanalysis	2
ciona-gene-annotation	2
cns-database	2
core	2
drosophila	2
enhancer-prediction	2
enhancer-stage-specificity	2
factorinteractions	2
genomiccontext	2
grn	2
histones	2
jshypotheses	2
mammals	2
microarray	2
molecularbiologytools	2
ncrna-long	2
networks	2
of	2
pituitary	2
pluripotency	2
polymorphism	2
prediction	2
protocols	2
pvalue-multiplicity	2
rearrangement	2
regulatory-flexibility	2
replicationorigins	2
site-prediction	2
spacing	2
strengthofmatch	2
tfsynergy	2
ultraconserveddefinition	2
whyconserved	2
applicationbioinf	1
arx	1
autoregulation	1
bioinformatics	1
books	1
cell-cultures	1
ciona-gene-annotations	1
cisregdatabase	1
cns-difference	1
cns-enhance	1
cns-enhancer	1
codingconservation	1
decoy	1
degeneratesites	1
dlx	1
doublets	1
drosophia	1
drosphila	1
duplicatese	1
element	1
enhancer-contextanalysis	1
factorsclass	1
fastindexing	1
fugu	1
genefamilyfootprinting	1
genemodels	1
generalregulation	1
generegulatorynetworks	1
gibbs	1
grns	1
hmm	1
igh	1
impossible	1
insertionsdeletions	1
intra-primate	1
kernel	1
noaccess	1
nomotif	1
notconservedfunction	1
nucleosome	1
olfactoryreceptors	1
pax6	1
phylogenytools	1
positiveselection	1
primers	1
purificationfromdna	1
sites	1
smarts	1
statistics	1
suppressor	1
syntenypapers	1
transgenesis	1
tr-reviews	1
turnover	1
word	1
writing	1

maximilianh's cross-species-enhancer [27 articles] Export

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