maximilianh's factors [32 articles] Export

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	Experimentally based contact energies decode interactions responsible for protein-DNA affinity and the role of molecular waters at the binding interface. [My Copy] Nucleic acids research, Vol. 37, No. 12. (1 July 2009), pp. 4076-4088. by N. Alpay Temiz, Carlos J. Camacho posted to factorclass factors tf transcription by maximilianh on 2009-08-06 21:32:14 as along with 1 person aalibes
	TFCat: the curated catalog of mouse and human transcription factors. [My Copy] Genome biology, Vol. 10, No. 3. (2009) by Debra L. Fulton, Saravanan Sundararajan, Gwenael Badis, et al.Timothy R. Hughes, Wyeth W. Wasserman, Jared C. Roach, Rob Sladek posted to factors factorsclass by maximilianh on 2009-08-05 08:23:05 as along with 7 people and 1 group megraw natstreet idonaldson bmajoros dolchan cisevol druvus BergmanLab
	Sequence features of DNA binding sites reveal structural class of associated transcription factor. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 2. (15 January 2006), pp. 157-163. by L. Narlikar, A. J. Hartemink posted to factorclass factors structure by maximilianh on 2009-03-23 16:27:07 as
	An affinity-based scoring scheme for predicting DNA-binding activities of modularly assembled zinc-finger proteins [My Copy] Nucl. Acids Res., Vol. 37, No. 2. (1 February 2009), pp. 506-515. by Jeffry D. Sander, Peter Zaback, Keith J. Joung, Daniel F. Voytas, Drena Dobbs posted to factors prediction thermodynamicalmodels by maximilianh on 2009-01-30 13:42:06 as along with 1 person aalibes
	Predicting DNA recognition by Cys2His2 zinc finger proteins. [My Copy] Bioinformatics (Oxford, England) (13 November 2008) by Anton V V. Persikov, Robert Osada, Mona Singh posted to factors by maximilianh on 2008-12-25 22:10:24 as along with 5 people and 1 group lptolik wilbur hugowill kgutwin aalibes KeatingJClub
	Predicting the binding preference of transcription factors to individual DNA k-mers [My Copy] Bioinformatics, Vol. 25, No. 8. (15 April 2009), pp. 1012-1018. by Trevis M. Alleyne, Lourdes Pena-Castillo, Gwenael Badis, et al.Shaheynoor Talukder, Michael F. Berger, Andrew R. Gehrke, Anthony A. Philippakis, Martha L. Bulyk, Quaid D. Morris, Timothy R. Hughes posted to factors by maximilianh on 2008-12-19 10:59:14 as along with 6 people and 1 group absterga TRHvidsten bais djkt lptolik nuin BenosLab
	Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites. [My Copy] Cell, Vol. 133, No. 7. (27 June 2008), pp. 1277-1289. by M. B. Noyes, R. G. Christensen, A. Wakabayashi, G. D. Stormo, M. H. Brodsky, S. A. Wolfe posted to 3dstructure factors recognition by maximilianh on 2008-12-12 09:45:16 as along with 6 people austin_mcdonald lusk maximilianh_otx emptyhb isimpson icq242500260
	Predicting transcription factor specificity with all-atom models. [My Copy] Nucleic acids research (1 October 2008) by Sahand Jamal J. Rahi, Peter Virnau, Leonid A A. Mirny, Mehran Kardar posted to 3dstructure factors by maximilianh on 2008-11-11 16:55:50 as along with 6 people Jporci chrn reyez lptolik zwang aalibes
	Protein-DNA interactions: structural, thermodynamic and clustering patterns of conserved residues in DNA-binding proteins [My Copy] Nucl. Acids Res. (18 September 2008), gkn573. by Shandar Ahmad, Ozlem Keskin, Akinori Sarai, Ruth Nussinov posted to factors by maximilianh on 2008-09-22 23:01:49 as along with 2 people TOchi aalibes
	Specific DNA-binding by Apicomplexan AP2 transcription factors [My Copy] Proceedings of the National Academy of Sciences (9 June 2008), 0801993105. by Erandi K. De Silva, Andrew R. Gehrke, Kellen Olszewski, et al.Ilsa Leon, Jasdave S. Chahal, Martha L. Bulyk, Manuel Llinas posted to factors by maximilianh on 2008-06-12 09:12:15 as along with 1 person aalibes
	Uncovering cis regulatory codes using synthetic promoter shuffling. [My Copy] PLoS ONE, Vol. 3, No. 4. (2008) by A. Kinkhabwala, C. C. Guet posted to factors generalregulation transcription by maximilianh on 2008-05-30 15:24:56 as along with 2 people boko4ikameto lusk
	Nuclear Dvl, c-Jun, beta-catenin, and TCF form a complex leading to stabilization of beta-catenin-TCF interaction. [My Copy] The Journal of cell biology, Vol. 180, No. 6. (24 March 2008), pp. 1087-1100. by X. Q. Gan, J. Y. Wang, Y. Xi, Z. L. Wu, Y. P. Li, L. Li posted to combination factorinteractions factors by maximilianh on 2008-05-01 09:25:57 as
	Implementing arithmetic and other analytic operations by transcriptional regulation. [My Copy] PLoS computational biology, Vol. 4, No. 4. (April 2008) by S. M. Cory, T. J. Perkins posted to combination factors transcription by maximilianh on 2008-04-28 18:07:18 as along with 6 people and 1 group balabu bayesian jjray eskay dquest dbikard SynBioSys
	Complex genetic interactions underlying expression differences between Drosophila races: analysis of chromosome substitutions. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 17. (29 April 2008), pp. 6362-6367. by Hurng-Yi Y. Wang, Yonggui Fu, Mary Sara S. McPeek, et al.Xuemei Lu, Sergey Nuzhdin, Anlong Xu, Jian Lu, Mao-Lien L. Wu, Chung-I I. Wu posted to cis-trans factors motif by maximilianh on 2008-04-23 21:10:22 as along with 4 people daveGerrard roys djkt brant
	ZIFIBI: Prediction of DNA binding sites for zinc finger proteins. [My Copy] Biochem Biophys Res Commun (3 March 2008) by Soo Young Y. Cho, Myungguen Chung, Minyoung Park, Sungjin Park, Young Seek S. Lee posted to factors structure by maximilianh on 2008-03-09 00:40:03 as along with 2 people guhjy yevishere
	Predicting and understanding transcription factor interactions based on sequence level determinants of combinatorial control [My Copy] Bioinformatics, Vol. 24, No. 1. (1 January 2008), pp. 26-33. by A. D. J. van Dijk, Ter, R. G. Immink, G. C. Angenent, R. C. H. J. van Ham posted to combination factors scanning by maximilianh on 2008-01-18 14:20:23 as along with 3 people heliopais idonaldson isimpson
	Prediction of synergistic transcription factors by function conservation [My Copy] Genome Biology, Vol. 8, No. 12. (2007) by Zihua Hu, Boyu Hu, James Collins posted to cluster factors noalignment tfsynergy transcription by maximilianh on 2007-12-08 15:12:16 as along with 3 people and 1 group cjeans nklee ale cis-regulatory-evolution
	TFCONES: A database of vertebrate transcription factor-encoding genes and their associated conserved noncoding elements [My Copy] BMC Genomics, Vol. 8 (29 November 2007), 441. by Alison P. Lee, Yuchen Yang, Sydney Brenner, Byrappa Venkatesh posted to cns cns-ranking factors transcription by maximilianh on 2007-12-02 14:16:52 as along with 3 people nklee yevishere guhjy
	Universal patterns of purifying selection at noncoding positions in bacteria. [My Copy] Genome Res (21 November 2007) by Nacho Molina, Erik van Nimwegen posted to binding cns factors by maximilianh on 2007-11-27 08:58:07 as along with 3 people operon aaronsmith ardalby
	Transposase-Derived Transcription Factors Regulate Light Signaling in Arabidopsis [My Copy] Science, Vol. 318, No. 5854. (23 November 2007), pp. 1302-1305. by Rongcheng Lin, Lei Ding, Claudio Casola, Daniel R. Ripoll, Cedric Feschotte, Haiyang Wang posted to factors transcription by maximilianh on 2007-11-23 17:16:54 as
	Prediction of Specific Protein-DNA Recognition by Knowledge-based Two-body and Three-body Interaction Potentials. [My Copy] Conf Proc IEEE Eng Med Biol Soc, Vol. 1 (2007), pp. 5017-5020. by Guijun Zhao, Matthew B B. Carson, Hui Lu posted to factors transcription by maximilianh on 2007-11-17 10:01:59 as
	Discovering motifs with transcription factor domain knowledge. [My Copy] Pac Symp Biocomput (2007), pp. 472-483. by H. C. Leung, F. Y. Chin, B. M. Chan posted to discovery factors motif transcription by maximilianh on 2007-11-14 13:26:18 as along with 1 person idonaldson
	Loss of androgen receptor binding to selective androgen response elements causes a reproductive phenotype in a knockin mouse model [My Copy] Proceedings of the National Academy of Sciences, Vol. 104 (Mar 2007), pp. 4961-4966. by Kris Schauwaers, Karel De Gendt, Philippa Saunders, et al.Nina Atanassova, Annemie Haelens, Leen Callewaert, Udo Moehren, Johannes Swinnen, Guido Verhoeven, Guy Verrijdt, Frank Claessens posted to factors transcription fromconnotea by maximilianh on 2007-09-23 12:59:11 as
	Alternative routes and mutational robustness in complex regulatory networks. [My Copy] Bio Systems, Vol. 88 (Mar 2007), pp. 163-172. by Andreas Wagner, Jeremiah Wright posted to factors transcription fromconnotea by maximilianh on 2007-09-23 12:59:10 as
	Video: Seminar about the ETS family of transcription factors at Agilent [My Copy] posted to factors transcription fromconnotea by maximilianh on 2007-09-23 12:59:05 as
	Structure of IRF-3 bound to the PRDIII-I regulatory element of the human interferon-beta enhancer. [My Copy] Molecular cell, Vol. 26 (Jun 2007), pp. 703-716. by Carlos Escalante, Estanislao N. Villán, Leyi Shen, Adolfo G. Sastre, Aneel Aggarwal posted to factors transcription fromconnotea by maximilianh on 2007-09-23 12:59:05 as
	Prediction of DNA-binding residues from sequence -- Ofran et al. 23 (13): i347 -- Bioinformatics [My Copy] posted to factors transcription fromconnotea by maximilianh on 2007-09-23 12:59:04 as
	Inferring protein DNA dependencies using motif alignments and mutual information -- Mahony et al. 23 (13): i297 -- Bioinformatics [My Copy] posted to factors transcription fromconnotea by maximilianh on 2007-09-23 12:59:04 as
	Genome-wide analyses reveal properties of redundant and specific promoter occupancy within the ETS gene family [My Copy] Genes and Development, Vol. 21 (Aug 2007), pp. 1882-1894. by Peter Hollenhorst, Atul Shah, Christopher Hopkins, Barbara Graves posted to factors transcription fromconnotea by maximilianh on 2007-09-23 12:59:03 as
	Prediction of cis-regulatory elements for drug-activated transcription factors in the regulation of drug-metabolising enzymes and drug transporters. [My Copy] Expert opinion on drug metabolism & toxicology, Vol. 2 (Jun 2006), pp. 367-379. by Michael Podvinec, Urs Meyer posted to factors transcription fromconnotea by maximilianh on 2007-09-23 12:59:02 as
	Correlation between binding rate constants and individual information of E. coli Fis binding sites -- Shultzaberger et al. 35 (16): 5275 -- Nucleic Acids Research [My Copy] posted to factors transcription fromconnotea by maximilianh on 2007-09-23 12:59:01 as
	Transcriptional regulation by competing transcription factor modules. [My Copy] PLoS computational biology, Vol. 2 (Dec 2006), pp. 164-164. by Rutger Hermsen, Sander Tans, Pieter Ten posted to factors transcription fromconnotea by maximilianh on 2007-09-23 12:59:01 as

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fromconnotea	411
motif	171
discovery	124
duplicates	59
scanning	57
synteny	56
enhancer	55
tandem	53
syntenypaper	52
enhancerprediction	43
molecularbiologytechniques	41
combination	36
cns-differences	34
factors	32
cns	31
geneorder	29
cross-species-enhancer	28
noalignment	28
wnt	26
review	23
ncrna	22
conserved	21
phylogenomics	21
alignment	19
phylogeny	18
transcription	18
chipchip	17
promoter	17
ultraconserved	17
notconserved	16
rennes	16
repeated	16
cis-trans	15
otx	15
genome	14
pcr	14
whole	14
cluster	12
enhancerpromotercompatibility	12
insulator	12
disease	11
pwm	11
tools	11
websites	11
chromatin	10
ciona	10
cns-enhancer-screen	10
cns-ranking	10
mirna	10
pwmimprovement	10
randombreakage	10
cns-collaboration	9
dna	9
3dstructure	8
cns-similarity	8
genome-papers	8
pitx	8
promoters	8
application	7
conservation	7
genes	7
genomeregulatoryblocks	7
genomicregulatoryblocks	7
pwmcomparison	7
syntenytools	7
bidirectionalpromoters	6
enhanceosome	6
enhancer-screen	6
enhancer-vertebrate-invertebrate	6
long-range	6
orthology	6
phenotype	6
position	6
promoterprediction	6
redundancy	6
snp	6
comparative	5
enhancer-and-repeats	5
enhancerdistances	5
genecoregulation	5
methylation	5
microrna	5
similarity	5
structure	5
textmining	5
validated	5
antisensetranscription	4
chipseq	4
comparison	4
competition	4
enhancersharing	4
expression	4
footprinting	4
interchromosomal	4
introns	4
otxpaper	4
recognition	4
region	4
silencer	4
wholegenomescanning	4
cionapopulationgenetics	3
coding	3
composition	3
copy-number-variation	3
encode	3
enhancerincodingregion	3
enhancer-prediction	3
evoluation	3
factorclass	3
genometrees	3
go	3
interaction	3
inter-cns-distances	3
matrix	3
mirnaenhancer	3
model-species	3
mutations	3
myarticles	3
ncrnas	3
phylotypicstage	3
promoter-minimal	3
regions	3
regulatory	3
rna-binding	3
syntenyorientation	3
term_recognition	3
tf	3
thermodynamicalmodels	3
trainingset	3
3putr	2
ascidians	2
assayscisregwetlab	2
binding	2
bullshitarticles	2
cellsortingbasedanalysis	2
ciona-gene-annotation	2
cns-database	2
codingconservation	2
core	2
drosophila	2
enhancer-stage-specificity	2
factorinteractions	2
genomiccontext	2
grn	2
histones	2
jshypotheses	2
mammals	2
microarray	2
molecularbiologytools	2
ncrna-long	2
networks	2
of	2
pituitary	2
pluripotency	2
polymorphism	2
prediction	2
protocols	2
pvalue-multiplicity	2
rearrangement	2
regulatory-flexibility	2
replicationorigins	2
site-prediction	2
spacing	2
strengthofmatch	2
tfsynergy	2
ultraconserveddefinition	2
whyconserved	2
applicationbioinf	1
arx	1
autoregulation	1
bioinformatics	1
books	1
cell-cultures	1
ciona-gene-annotations	1
cisregdatabase	1
cns-difference	1
cns-enhance	1
cns-enhancer	1
decoy	1
degeneratesites	1
dlx	1
doublets	1
drosophia	1
drosphila	1
duplicatese	1
element	1
enhancer-contextanalysis	1
factorsclass	1
fastindexing	1
fugu	1
genefamilyfootprinting	1
genemodels	1
generalregulation	1
generegulatorynetworks	1
gibbs	1
grns	1
hmm	1
igh	1
impossible	1
insertionsdeletions	1
intra-primate	1
kernel	1
noaccess	1
nomotif	1
notconservedfunction	1
nucleosome	1
olfactoryreceptors	1
pax6	1
phylogenytools	1
positiveselection	1
primers	1
purificationfromdna	1
sites	1
smarts	1
statistics	1
suppressor	1
syntenypapers	1
transgenesis	1
tr-reviews	1
turnover	1
word	1
writing	1

maximilianh's factors [32 articles] Export

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