maximilianh's geneorder [29 articles] Export

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	Long-range regulation is a major driving force in maintaining genome integrity [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (15 August 2009), 203. by Emmanuel Mongin, Ken Dewar, Mathieu Blanchette posted to synteny genomeregulatoryblocks geneorder by maximilianh on 2009-08-25 16:49:10 as along with 8 people and 1 group klo mox daveGerrard mkotlyar xianjun cisevol JustinCrocker MickElliot BergmanLab
	Recovering genome rearrangements in the mammalian phylogeny [My Copy] Genome Research, Vol. 19, No. 5. (May 2009), pp. 934-942. by Hao Zhao, Guillaume Bourque posted to geneorder rearrangement by maximilianh on 2009-05-04 09:37:42 as along with 2 people shikin djkt
	Chromosomal clustering of genes controlled by the aire transcription factor. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 20. (17 May 2005), pp. 7233-7238. by J. B. Johnnidis, E. S. Venanzi, D. J. Taxman, J. P. Ting, C. O. Benoist, D. J. Mathis posted to genecoregulation geneorder synteny syntenypaper by maximilianh on 2008-09-13 16:05:26 as
	A genome-wide view of the spectrum of spontaneous mutations in yeast [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 27. (8 July 2008), pp. 9272-9277. by Michael Lynch, Way Sung, Krystalynne Morris, et al.Nicole Coffey, Christian R. Landry, Erik B. Dopman, W. Joseph Dickinson, Kazufusa Okamoto, Shilpa Kulkarni, Daniel L. Hartl, W. Kelley Thomas posted to duplicates geneorder mutations tandem by maximilianh on 2008-07-03 11:09:59 as along with 6 people operon pavitra gbloeb Annab druvus stevanspringer
	Reconstructing ordinal relationships in the Demospongiae using mitochondrial genomic data. [My Copy] Molecular phylogenetics and evolution (16 May 2008) by Dennis V V. Lavrov, Xiujuan Wang, Michelle Kelly posted to geneorder syntenypaper by maximilianh on 2008-06-30 09:08:20 as
	Non-random retention of protein-coding overlapping genes in Metazoa [My Copy] BMC Genomics, Vol. 9, No. 1. (16 April 2008), 174. by Giulia Solda, Mikita Suyama, Paride Pelucchi, et al.Silvia Boi, Alessandro Guffanti, Ermanno Rizzi, Peer Bork, Maria Tenchini, Francesca Ciccarelli posted to genecoregulation geneorder genes synteny syntenyorientation by maximilianh on 2008-06-23 23:59:43 as along with 2 people and 1 group daveGerrard cisevol BergmanLab
	Genome classification by gene distribution: an overlapping subspace clustering approach [My Copy] BMC Evolutionary Biology, Vol. 8 (23 April 2008), 116. by Jason Li, Saman K. Halgamuge, Sen-Lin Tang posted to geneorder synteny syntenypaper by maximilianh on 2008-04-28 10:28:20 as along with 1 person cmzmasek
	Highly conserved non-coding sequences and the 18q critical region for short stature: a common mechanism of disease? [My Copy] PLoS ONE, Vol. 3, No. 1. (2008) by F. Rizzolio, S. Bione, C. Sala, et al.C. Tribioli, R. Ciccone, O. Zuffardi, N. di Iorgi, M. Maghnie, D. Toniolo posted to disease geneorder by maximilianh on 2008-01-29 16:03:07 as
	How gene order is influenced by the biophysics of transcription regulation [My Copy] PNAS (20 August 2007), 0700672104. by Grigory Kolesov, Zeba Wunderlich, Olga N. Laikova, Mikhail S. Gelfand, Leonid A. Mirny posted to geneorder by maximilianh on 2008-01-23 20:08:04 as along with 6 people madhadron margaritis zwang Jporci lambda jjray
	The evolutionary dynamics of eukaryotic gene order. [My Copy] Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 299-310. by L. D. Hurst, C. Pál, M. J. Lercher posted to geneorder synteny syntenypaper by maximilianh on 2008-01-15 14:33:23 as along with 5 people operon timflutre olympos jpoyatos ArtemPankin
	Inversions and the dynamics of eukaryotic gene order. [My Copy] Trends Genet, Vol. 17, No. 6. (June 2001), pp. 304-306. by M. A. Huynen, B. Snel, P. Bork posted to geneorder synteny syntenyorientation syntenypaper by maximilianh on 2008-01-15 11:20:12 as
	Genomic Gene Clustering Analysis of Pathways in Eukaryotes [My Copy] Genome Res., Vol. 13, No. 5. (1 May 2003), pp. 875-882. by Jennifer M. Lee, Erik L. Sonnhammer posted to geneorder by maximilianh on 2008-01-15 11:13:06 as along with 6 people and 1 group thegoose2 tharris JeffR100 jpoyatos alhufton Garamonfok C. elegans / WormBase
	Cis- and Trans-Acting Elements Regulate the Mouse Psmb9 Meiotic Recombination Hotspot. [My Copy] PLoS Genet, Vol. 3, No. 6. (22 June 2007) by Frédéric Baudat, Bernard de Massy posted to geneorder randombreakage synteny syntenypaper by maximilianh on 2007-12-07 09:29:17 as along with 1 person and 1 group dpollard EisenLab
	On the association between chromosomal rearrangements and genic evolution in humans and chimpanzees [My Copy] Genome Biology, Vol. 8, No. 10. (2007) by Tomas M. Bonet, Jesus S. Ruiz, Lluis Armengol, et al.Razi Khaja, Jaume Bertranpetit, Mariano Rocchi, Elodie Gazave, Nuria L. Bigas, Arcadi Navarro posted to geneorder synteny syntenypaper by maximilianh on 2007-11-04 00:16:54 as along with 2 people and 1 group djkt hpaces Bioinformatics
	The random versus fragile breakage models of chromosome evolution: a matter of resolution. [My Copy] Mol Genet Genomics, Vol. 278, No. 5. (November 2007), pp. 487-491. by T. S. Becker, B. Lenhard posted to geneorder genomicregulatoryblocks synteny syntenypaper by maximilianh on 2007-11-02 18:36:01 as along with 2 people Heute boudinot
	Tandem repeats and morphological variation [My Copy] posted to geneorder genes tandem by maximilianh on 2007-11-01 22:18:38 as
	Natural history and evolutionary principles of gene duplication in fungi [My Copy] Nature, Vol. 449, No. 7158. (06 September 2007), pp. 54-61. by Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev posted to geneorder genometrees synteny by maximilianh on 2007-10-27 23:01:50 as along with 20 people and 4 groups Jporci bcondon GustavoLacerda biomcgary gdb schwartzjmc keb45 gjuggler aheilbut dpollard tny dchughes djkt stajich zwang lp2 tzhughes pkm bpcusack dandaman EisenLab G4ID Genetics-of-Gambling Mycology
	Recent developments in computational approaches for uncovering genomic homology. [My Copy] Bioessays, Vol. 26, No. 11. (November 2004), pp. 1225-1235. by C. Simillion, K. Vandepoele, Y. Van de Peer posted to geneorder synteny by maximilianh on 2007-10-08 11:17:25 as
	The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice. [My Copy] Genome Res, Vol. 12, No. 11. (November 2002), pp. 1792-1801. by K. Vandepoele, Y. Saeys, C. Simillion, J. Raes, Y. Van De Peer posted to geneorder synteny by maximilianh on 2007-10-02 10:24:40 as along with 2 people natstreet magusina
	Genome evolution in yeasts. [My Copy] Nature, Vol. 430, No. 6995. (1 July 2004), pp. 35-44. by B. Dujon, D. Sherman, G. Fischer, et al.P. Durrens, S. Casaregola, I. Lafontaine, J. De Montigny, C. Marck, C. Neuvéglise, E. Talla, N. Goffard, L. Frangeul, M. Aigle, V. Anthouard, A. Babour, V. Barbe, S. Barnay, S. Blanchin, J. M. Beckerich, E. Beyne, C. Bleykasten, A. Boisramé, J. Boyer, L. Cattolico, F. Confanioleri, A. De Daruvar, L. Despons, E. Fabre, C. Fairhead, H. Ferry-Dumazet, A. Groppi, F. Hantraye, C. Hennequin, N. Jauniaux, P. Joyet, R. Kachouri, A. Kerrest, R. Koszul, M. Lemaire, I. Lesur, L. Ma, H. Muller, J. M. Nicaud, M. Nikolski, S. Oztas, O. Ozier-Kalogeropoulos, S. Pellenz, S. Potier, G. F. Richard, M. L. Straub, A. Suleau, D. Swennen, F. Tekaia, M. Wésolowski-Louvel, E. Westhof, B. Wirth, M. Zeniou-Meyer, I. Zivanovic, M. Bolotin-Fukuhara, A. Thierry, C. Bouchier, B. Caudron, C. Scarpelli, C. Gaillardin, J. Weissenbach, P. Wincker, J. L. Souciet posted to geneorder genes synteny by maximilianh on 2007-10-01 12:20:15 as along with 6 people and 3 groups dbensasson evaf indigoviolet dchughes dbenn nklee EisenLab G4ID Genetics-of-Gambling
	Gapped permutation pattern discovery for gene order comparisons. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 14, pp. 45-55. by Laxmi Parida posted to geneorder fromconnotea by maximilianh on 2007-09-23 12:59:11 as
	Comprehensive Annotation of Bidirectional Promoters Identifies Co-Regulation among Breast and Ovarian Cancer Genes. [My Copy] PLoS Comput Biol, Vol. 3 (Apr 2007), pp. 72-72. by Mary Yang, Laura Koehly, Laura Elnitski posted to geneorder fromconnotea by maximilianh on 2007-09-23 12:59:10 as
	The evolutionary dynamics of eukaryotic gene order. [My Copy] Nature reviews. Genetics, Vol. 5 (Apr 2004), pp. 299-310. by Laurence Hurst, Csaba Pál, Martin Lercher posted to geneorder fromconnotea by maximilianh on 2007-09-23 12:59:10 as
	Organization of Hox genes in ascidians: Present, past, and future [My Copy] Developmental Dynamics, Vol. 233 (xx 2005), pp. 382-389. by Tetsuro Ikuta, Hidetoshi Saiga posted to geneorder fromconnotea by maximilianh on 2007-09-23 12:59:10 as
	Comparison of C. elegans and C. briggsae Genome Sequences Reveals Extensive Conservation of Chromosome Organization and Synteny [My Copy] PLoS Biology, Vol. 5 (Jul 2007), pp. 167-167. by Ladeana Hillier, Raymond Miller, Scott Baird, et al.Asif Chinwalla, Lucinda Fulton, Daniel Koboldt, Robert Waterston posted to geneorder fromconnotea by maximilianh on 2007-09-23 12:59:05 as
	Natural history and evolutionary principles of gene duplication in fungi [My Copy] Nature, Vol. 449 (Sep 2007), pp. 54-61. by Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev posted to geneorder fromconnotea by maximilianh on 2007-09-23 12:59:01 as
	Stability of rearrangement measures in the comparison of genome sequences. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 13 (Mar 2006), pp. 554-566. by Matthew Mazowita, Lani Haque, David Sankoff posted to geneorder fromconnotea by maximilianh on 2007-09-23 12:59:01 as
	Dynamics of Mammalian Chromosome Evolution Inferred from Multispecies Comparative Maps [My Copy] Science, Vol. 309 (Jul 2005), pp. 613-617. by William Murphy, Denis Larkin, Annelie Der, et al.Guillaume Bourque, Glenn Tesler, Loretta Auvil, Jonathan Beever, Bhanu Chowdhary, Francis Galibert, Lisa Gatzke, Christophe Hitte, Stacey Meyers, Denis Milan, Elaine Ostrander, Greg Pape, Heidi Parker, Terje Raudsepp, Margarita Rogatcheva, Lawrence Schook, Loren Skow, Michael Welge, James Womack, Stephen O'Brien, Pavel Pevzner, Harris Lewin posted to geneorder fromconnotea by maximilianh on 2007-09-23 12:59:01 as
	The evolutionary dynamics of eukaryotic gene order. [My Copy] Nature reviews. Genetics, Vol. 5 (Apr 2004), pp. 299-310. by Laurence Hurst, Csaba Pál, Martin Lercher posted to geneorder fromconnotea by maximilianh on 2007-09-23 12:59:01 as

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fromconnotea	411
motif	172
discovery	125
duplicates	59
scanning	57
synteny	56
enhancer	55
tandem	53
syntenypaper	52
enhancerprediction	43
molecularbiologytechniques	41
combination	36
cns-differences	34
factors	32
cns	31
geneorder	29
cross-species-enhancer	28
noalignment	28
wnt	26
review	23
ncrna	22
conserved	21
phylogenomics	21
alignment	19
phylogeny	18
transcription	18
chipchip	17
promoter	17
ultraconserved	17
notconserved	16
rennes	16
repeated	16
cis-trans	15
otx	15
genome	14
pcr	14
whole	14
cluster	12
enhancerpromotercompatibility	12
insulator	12
disease	11
pwm	11
tools	11
websites	11
chromatin	10
ciona	10
cns-enhancer-screen	10
cns-ranking	10
mirna	10
pwmimprovement	10
randombreakage	10
cns-collaboration	9
dna	9
3dstructure	8
cns-similarity	8
genome-papers	8
pitx	8
promoters	8
application	7
conservation	7
genes	7
genomeregulatoryblocks	7
genomicregulatoryblocks	7
pwmcomparison	7
syntenytools	7
bidirectionalpromoters	6
enhanceosome	6
enhancer-screen	6
enhancer-vertebrate-invertebrate	6
long-range	6
orthology	6
phenotype	6
position	6
promoterprediction	6
redundancy	6
snp	6
chipseq	5
comparative	5
enhancer-and-repeats	5
enhancerdistances	5
genecoregulation	5
methylation	5
microrna	5
similarity	5
structure	5
textmining	5
validated	5
antisensetranscription	4
comparison	4
competition	4
enhancersharing	4
expression	4
footprinting	4
interchromosomal	4
introns	4
otxpaper	4
recognition	4
region	4
silencer	4
wholegenomescanning	4
cionapopulationgenetics	3
coding	3
composition	3
copy-number-variation	3
encode	3
enhancerincodingregion	3
enhancer-prediction	3
evoluation	3
factorclass	3
genometrees	3
go	3
interaction	3
inter-cns-distances	3
matrix	3
mirnaenhancer	3
model-species	3
mutations	3
myarticles	3
ncrnas	3
phylotypicstage	3
promoter-minimal	3
regions	3
regulatory	3
rna-binding	3
syntenyorientation	3
term_recognition	3
tf	3
thermodynamicalmodels	3
trainingset	3
3putr	2
ascidians	2
assayscisregwetlab	2
binding	2
bullshitarticles	2
cellsortingbasedanalysis	2
ciona-gene-annotation	2
cns-database	2
codingconservation	2
core	2
drosophila	2
enhancer-stage-specificity	2
factorinteractions	2
genomiccontext	2
grn	2
histones	2
jshypotheses	2
mammals	2
microarray	2
molecularbiologytools	2
ncrna-long	2
networks	2
of	2
pituitary	2
pluripotency	2
polymorphism	2
prediction	2
protocols	2
pvalue-multiplicity	2
rearrangement	2
regulatory-flexibility	2
replicationorigins	2
site-prediction	2
spacing	2
strengthofmatch	2
tfsynergy	2
ultraconserveddefinition	2
whyconserved	2
applicationbioinf	1
arx	1
autoregulation	1
bioinformatics	1
books	1
cell-cultures	1
ciona-gene-annotations	1
cisregdatabase	1
cns-difference	1
cns-enhance	1
cns-enhancer	1
decoy	1
degeneratesites	1
dlx	1
doublets	1
drosophia	1
drosphila	1
duplicatese	1
element	1
enhancer-contextanalysis	1
factorsclass	1
fastindexing	1
fugu	1
genefamilyfootprinting	1
genemodels	1
generalregulation	1
generegulatorynetworks	1
gibbs	1
grns	1
hmm	1
igh	1
impossible	1
insertionsdeletions	1
intra-primate	1
kernel	1
noaccess	1
nomotif	1
notconservedfunction	1
nucleosome	1
olfactoryreceptors	1
pax6	1
phylogenytools	1
positiveselection	1
primers	1
purificationfromdna	1
sites	1
smarts	1
statistics	1
suppressor	1
syntenypapers	1
transgenesis	1
tr-reviews	1
turnover	1
word	1
writing	1

maximilianh's geneorder [29 articles] Export

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