maximilianh's synteny [56 articles] Export

Recent papers added to maximilianh's library classified by the tag synteny. You can also see everyone's synteny.

	DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes [My Copy] posted to tools syntenytools synteny by maximilianh on 2009-11-20 15:31:22 as
	CoGe: GEvo [My Copy] posted to websites tools synteny by maximilianh on 2009-11-20 15:30:12 as
	Conservation of enhancer location in divergent insects. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 34. (25 August 2009), pp. 14414-14419. by Jessica Cande, Yury Goltsev, Michael S. Levine posted to synteny by maximilianh on 2009-10-07 14:57:35 as along with 2 people and 1 group cisevol JustinCrocker cis-regulatory-evolution
	Cis-regulation and chromosomal rearrangement of the fgf8 locus after the Teleost/tetrapod split. [My Copy] Developmental biology (24 September 2009) by Anna Z. Komisarczuk, Koichi Kawakami, Thomas S. Becker posted to syntenypaper synteny by maximilianh on 2009-10-06 10:51:07 as
	Combinatorics of Genome Rearrangements - Table of Contents - The MIT Press [My Copy] posted to syntenytools syntenypapers syntenyorientation synteny by maximilianh on 2009-09-23 11:46:59 as
	Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention [My Copy] Genome Research, Vol. 19, No. 11. (29 November 2009), pp. 2036-2051. by Andrew L. Hufton, Susanne Mathia, Helene Braun, et al.Udo Georgi, Hans Lehrach, Martin Vingron, Albert J. Poustka, Georgia Panopoulou posted to synteny pax6 noalignment genomeregulatoryblocks enhancer by maximilianh on 2009-08-27 10:37:09 as along with 3 people and 1 group djkt alhufton brant Journal picks
	Long-range regulation is a major driving force in maintaining genome integrity [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (15 August 2009), 203. by Emmanuel Mongin, Ken Dewar, Mathieu Blanchette posted to synteny genomeregulatoryblocks geneorder by maximilianh on 2009-08-25 16:49:10 as along with 8 people and 1 group klo mox daveGerrard mkotlyar xianjun cisevol JustinCrocker MickElliot BergmanLab
	Operons in eukaryotes. [My Copy] Briefings in functional genomics & proteomics, Vol. 3, No. 3. (November 2004), pp. 199-211. by T. Blumenthal posted to synteny by maximilianh on 2009-07-10 09:54:21 as along with 3 people imouthesmp Eonwe mjoach
	Automated identification of conserved synteny after whole-genome duplication [My Copy] Genome Research, Vol. 19, No. 8. (22 August 2009), pp. 1497-1505. by Julian M. Catchen, John S. Conery, John H. Postlethwait posted to synteny syntenypaper syntenytools by maximilianh on 2009-05-26 22:58:36 as along with 4 people biomcgary djkt xianjun natstreet
	The impact of genomic neighborhood on the evolution of human and chimpanzee transcriptome [My Copy] Genome Research (1 January 2009) by Subhajyoti De, Sarah A. Teichmann, Madan M. Babu posted to synteny by maximilianh on 2009-05-04 09:33:52 as along with 12 people and 1 group mox natstreet clearbluespring djkt alweber jbhiatt xianjun cisevol inesdesantiago provero JustinCrocker medic0747 cis-regulatory-evolution
	Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories. [My Copy] Genome research (2 April 2009) by Denis M M. Larkin, Greg Pape, Ravikiran Donthu, Loretta Auvil, Michael Welge, Harris A A. Lewin posted to synteny by maximilianh on 2009-05-02 12:11:27 as along with 2 people xianjun davfre
	Cross-species mapping of bidirectional promoters enables prediction of unannotated 5' UTRs and identification of species-specific transcripts. [My Copy] BMC genomics, Vol. 10 (24 April 2009), 189. by H. Piontkivska, M. Q. Yang, D. M. Larkin, H. A. Lewin, J. Reecy, L. Elnitski posted to bidirectionalpromoters synteny by maximilianh on 2009-05-01 12:59:13 as along with 2 people guhjy JustinCrocker
	Dynamic reprogramming of transcription factors to and from the subtelomere. [My Copy] Genome research, Vol. 19, No. 6. (16 June 2009), pp. 1014-1025. by H. C. Mak, L. Pillus, T. Ideker posted to genecoregulation synteny by maximilianh on 2009-04-20 10:13:29 as along with 5 people and 1 group megraw HawkinsJohnC epigenetics idonaldson JustinCrocker BenosLab
	Systematic human/zebrafish comparative identification of cis-regulatory activity around vertebrate developmental transcription factor genes [My Copy] Developmental Biology (12 November 2008) by P. Navratilova, D. Fredman, T. Hawkins, K. Turner, B. Lenhard, T. Becker posted to genomeregulatoryblocks synteny by maximilianh on 2009-04-13 12:57:52 as along with 1 person isimpson
	Are There Rearrangement Hotspots in the Human Genome? [My Copy] PLoS Comput Biol, Vol. 3, No. 11. (9 November 2007) by Max A A. Alekseyev, Pavel A A. Pevzner posted to synteny by maximilianh on 2009-01-14 17:46:59 as along with 2 people ealloza stajich
	SynBlast: Assisting the analysis of conserved synteny information [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (24 August 2008), 351. by Jorg Lehmann, Peter Stadler, Sonja Prohaska posted to synteny syntenytools by maximilianh on 2008-12-17 22:33:07 as along with 6 people and 1 group avilella natstreet druvus grahamc nuin Neeperando Ensembl Compara citations
	Syntenator: multiple gene order alignments with a gene-specific scoring function. [My Copy] Algorithms for molecular biology : AMB, Vol. 3 (06 November 2008), 14. by Christian Rödelsperger, Christoph Dieterich posted to synteny syntenypaper by maximilianh on 2008-11-10 08:44:54 as along with 5 people and 2 groups avilella Neeperando treangen cisevol druvus Ensembl Compara citations BergmanLab
	Arx Is a Direct Target of Dlx2 and Thereby Contributes to the Tangential Migration of GABAergic Interneurons [My Copy] J. Neurosci., Vol. 28, No. 42. (15 October 2008), pp. 10674-10686. by Gaia Colasante, Patrick Collombat, Valentina Raimondi, et al.Dario Bonanomi, Carmelo Ferrai, Mario Maira, Kazuaki Yoshikawa, Ahmed Mansouri, Flavia Valtorta, John L. Rubenstein, Vania Broccoli posted to enhancer-vertebrate-invertebrate synteny syntenypaper by maximilianh on 2008-10-26 23:04:35 as along with 1 person tyrell_turing
	Chromosomal clustering of genes controlled by the aire transcription factor. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 20. (17 May 2005), pp. 7233-7238. by J. B. Johnnidis, E. S. Venanzi, D. J. Taxman, J. P. Ting, C. O. Benoist, D. J. Mathis posted to genecoregulation geneorder synteny syntenypaper by maximilianh on 2008-09-13 16:05:26 as
	Non-random retention of protein-coding overlapping genes in Metazoa [My Copy] BMC Genomics, Vol. 9, No. 1. (16 April 2008), 174. by Giulia Solda, Mikita Suyama, Paride Pelucchi, et al.Silvia Boi, Alessandro Guffanti, Ermanno Rizzi, Peer Bork, Maria Tenchini, Francesca Ciccarelli posted to genecoregulation geneorder genes synteny syntenyorientation by maximilianh on 2008-06-23 23:59:43 as along with 2 people and 1 group daveGerrard cisevol BergmanLab
	Subfunctionalization of Duplicated Zebrafish pax6 Genes by cis-Regulatory Divergence [My Copy] PLoS Genetics, Vol. 4, No. 2. (1 February 2008), e29. by Dirk A. Kleinjan, Ruth M. Bancewicz, Philippe Gautier, et al.Ralf Dahm, Helia B. Schonthaler, Giuseppe Damante, Anne Seawright, Ann M. Hever, Patricia L. Yeyati, Veronica van Heyningen, Pedro Coutinho posted to cns-differences duplicates synteny tandem by maximilianh on 2008-06-05 23:41:15 as along with 5 people JustinCrocker brant gjuggler emptyhb Stew
	Convergent evolution of clustering of Iroquois homeobox genes across metazoans. [My Copy] Molecular biology and evolution (9 May 2008) by Manuel Irimia, Ignacio Maeso, Jordi Garcia-Fernàndez posted to copy-number-variation duplicates synteny tandem by maximilianh on 2008-05-17 10:01:23 as along with 1 person fhsantanna
	OGtree: a tool for creating genome trees of prokaryotes based on overlapping genes. [My Copy] Nucleic acids research (2 May 2008) by Li-Wei W. Jiang, Kuang-Lun L. Lin, Chin Lung L. Lu posted to synteny syntenypaper syntenytools by maximilianh on 2008-05-11 22:20:19 as
	Genome classification by gene distribution: an overlapping subspace clustering approach [My Copy] BMC Evolutionary Biology, Vol. 8 (23 April 2008), 116. by Jason Li, Saman K. Halgamuge, Sen-Lin Tang posted to geneorder synteny syntenypaper by maximilianh on 2008-04-28 10:28:20 as along with 1 person cmzmasek
	Assessing the relative rate of (mitochondrial) genomic change. [My Copy] Genetics, Vol. 167, No. 2. (June 2004), pp. 1027-1030. by M. Dowton posted to synteny by maximilianh on 2008-04-15 17:57:05 as
	PSAT: A web tool to compare genomic neighborhoods of multiple prokaryotic genomes [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Christine Fong, Laurence Rohmer, Matthew Radey, Michael Wasnick, Mitchell Brittnacher posted to synteny syntenypaper syntenytools by maximilianh on 2008-03-31 08:44:47 as along with 4 people azazello druvus treangen neils
	Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates. [My Copy] Genome Res (25 July 2007) by Yoichiro Nakatani, Hiroyuki Takeda, Yuji Kohara, Shinichi Morishita posted to synteny syntenypaper by maximilianh on 2008-03-11 17:36:56 as along with 2 people and 2 groups dchughes grahamc G4ID Genetics-of-Gambling
	Reconstructing the genomic architecture of mammalian ancestors using multispecies comparative maps. [My Copy] Hum Genomics, Vol. 1, No. 1. (November 2003), pp. 30-40. by W. J. Murphy, G. Bourque, G. Tesler, P. Pevzner, S. J. O'Brien posted to randombreakage synteny syntenypaper by maximilianh on 2008-03-05 14:12:58 as along with 1 person balajis
	Conservation of the MHC-like region throughout evolution. [My Copy] Immunogenetics, Vol. 55, No. 3. (June 2003), pp. 141-148. by E. G. Danchin, L. Abi-Rached, A. Gilles, P. Pontarotti posted to synteny syntenypaper by maximilianh on 2008-03-05 10:34:18 as
	Mapping cis-regulatory domains in the human genome using multi-species conservation of synteny. [My Copy] Hum Mol Genet, Vol. 14, No. 20. (15 October 2005), pp. 3057-3063. by N. Ahituv, S. Prabhakar, F. Poulin, E. M. Rubin, O. Couronne posted to synteny syntenypaper by maximilianh on 2008-03-01 21:13:32 as along with 2 people ethkim aprasad
	Quantification of insect genome divergence. [My Copy] Trends Genet (8 November 2006) by Evgeny M M. Zdobnov, Peer Bork posted to phylogenomics synteny syntenypaper by maximilianh on 2008-01-17 16:59:34 as along with 3 people and 1 group nachtalp indigoviolet balicea EisenLab
	Comparison of Pax1/9 Locus Reveals 500-Myr-Old Syntenic Block and Evolutionary Conserved Noncoding Regions [My Copy] Molecular Biology and Evolution, Vol. 24, No. 3. (March 2007), pp. 784-791. by Wang, Wei, Zhong, et al. Jing, Su, Bing, Zhou, Yan, Wang, Yi-Quan posted to genomicregulatoryblocks synteny syntenypaper by maximilianh on 2008-01-15 19:50:49 as along with 1 person alhufton
	Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates [My Copy] Genome Res., Vol. 17, No. 5. (1 May 2007), pp. 545-555. by Hiroshi Kikuta, Mary Laplante, Pavla Navratilova, et al.Anna Z. Komisarczuk, Par G. Engstrom, David Fredman, Altuna Akalin, Mario Caccamo, Ian Sealy, Kerstin Howe, Julien Ghislain, Guillaume Pezeron, Philippe Mourrain, Staale Ellingsen, Andrew C. Oates, Christine Thisse, Bernard Thisse, Isabelle Foucher, Birgit Adolf, Andrea Geling, Boris Lenhard, Thomas S. Becker posted to genomicregulatoryblocks randombreakage synteny syntenypaper by maximilianh on 2008-01-15 17:38:19 as along with 3 people and 3 groups dchughes djkt boudinot Bioinformatics G4ID Genetics-of-Gambling
	The evolutionary dynamics of eukaryotic gene order. [My Copy] Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 299-310. by L. D. Hurst, C. Pál, M. J. Lercher posted to geneorder synteny syntenypaper by maximilianh on 2008-01-15 14:33:23 as along with 5 people operon timflutre olympos jpoyatos ArtemPankin
	Inversions and the dynamics of eukaryotic gene order. [My Copy] Trends Genet, Vol. 17, No. 6. (June 2001), pp. 304-306. by M. A. Huynen, B. Snel, P. Bork posted to geneorder synteny syntenyorientation syntenypaper by maximilianh on 2008-01-15 11:20:12 as
	Dynamics of Mammalian Chromosome Evolution Inferred from Multispecies Comparative Maps [My Copy] Science, Vol. 309, No. 5734. (22 July 2005), pp. 613-617. by William J. Murphy, Denis M. Larkin, Der, et al.Guillaume Bourque, Glenn Tesler, Loretta Auvil, Jonathan E. Beever, Bhanu P. Chowdhary, Francis Galibert, Lisa Gatzke, Christophe Hitte, Stacey N. Meyers, Denis Milan, Elaine A. Ostrander, Greg Pape, Heidi G. Parker, Terje Raudsepp, Margarita B. Rogatcheva, Lawrence B. Schook, Loren C. Skow, Michael Welge, James E. Womack, Stephen J. O'Brien, Pavel A. Pevzner, Harris A. Lewin posted to randombreakage synteny by maximilianh on 2008-01-15 10:45:54 as along with 2 people balajis mycitation
	Chromosome rearrangements in evolution: From gene order to genome sequence and back. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 20. (30 September 2003), pp. 11188-11189. by D. Sankoff, J. H. Nadeau posted to synteny syntenypaper by maximilianh on 2008-01-15 10:38:05 as along with 2 people and 1 group operon Auger Dead 60's
	Evidence for co-evolution of gene order and recombination rate. [My Copy] Nat Genet, Vol. 33, No. 3. (March 2003), pp. 392-395. by C. Pál, L. D. Hurst posted to randombreakage synteny syntenypaper by maximilianh on 2008-01-14 23:29:52 as along with 2 people lesander jpoyatos
	A new fast heuristic for computing the breakpoint phylogeny and experimental phylogenetic analyses of real and synthetic data. [My Copy] Proc Int Conf Intell Syst Mol Biol, Vol. 8 (2000), pp. 104-115. by M. E. Cosner, R. K. Jansen, B. M. Moret, et al.L. A. Raubeson, L. S. Wang, T. Warnow, S. Wyman posted to phylogenomics synteny syntenypaper by maximilianh on 2008-01-14 18:29:27 as
	Lengths of chromosomal segments conserved since divergence of man and mouse. [My Copy] Proc Natl Acad Sci U S A, Vol. 81, No. 3. (February 1984), pp. 814-818. by J. H. Nadeau, B. A. Taylor posted to randombreakage synteny syntenypaper by maximilianh on 2008-01-14 15:55:48 as along with 2 people Retchless AaronDarling
	The Fragile Breakage versus Random Breakage Models of Chromosome Evolution. [My Copy] PLoS Comput Biol, Vol. 2, No. 2. (24 February 2006) by Qian Peng, Pavel A A. Pevzner, Glenn Tesler posted to genomeregulatoryblocks randombreakage synteny syntenypaper by maximilianh on 2008-01-14 15:54:13 as along with 1 person AaronDarling
	Statistical evidence for a more than 800-million-year-old evolutionarily conserved genomic region in our genome. [My Copy] J Mol Evol, Vol. 59, No. 5. (November 2004), pp. 587-597. by E. G. Danchin, P. Pontarotti posted to synteny syntenypaper by maximilianh on 2008-01-14 12:16:51 as
	Cis- and Trans-Acting Elements Regulate the Mouse Psmb9 Meiotic Recombination Hotspot. [My Copy] PLoS Genet, Vol. 3, No. 6. (22 June 2007) by Frédéric Baudat, Bernard de Massy posted to geneorder randombreakage synteny syntenypaper by maximilianh on 2007-12-07 09:29:17 as along with 1 person and 1 group dpollard EisenLab
	The determinants of gene order conservation in yeasts [My Copy] Genome Biology, Vol. 8 (05 November 2007), R233. by Juan F. Poyatos, Laurence D. Hurst posted to genometrees synteny syntenypaper by maximilianh on 2007-12-02 21:42:13 as along with 3 people and 1 group stajich cjeans hpaces Mycology
	Inferring genome-scale rearrangement phylogeny and ancestral gene order: a Drosophila case study [My Copy] Genome Biology, Vol. 8, No. 11. (08 November 2007), R236. by Arjun Bhutkar, William Gelbart, Temple Smith posted to genometrees genomicregulatoryblocks phylogenomics synteny syntenypaper by maximilianh on 2007-11-22 18:12:13 as along with 7 people and 1 group daveGerrard operon indigoviolet dpollard balicea hpaces isimpson EisenLab
	Genomic regulatory blocks underlie extensive microsynteny conservation in insects [My Copy] Genome Research, Vol. 17, No. 12. (7 December 2007), pp. 1898-1908. by PÃ¤r G. EngstrÃ¶m, Shannan J. Ho Sui, Ãyvind Drivenes, Thomas S. Becker, Boris Lenhard posted to genomicregulatoryblocks synteny syntenypaper by maximilianh on 2007-11-13 18:20:24 as along with 1 person sujaikumar
	On the association between chromosomal rearrangements and genic evolution in humans and chimpanzees [My Copy] Genome Biology, Vol. 8, No. 10. (2007) by Tomas M. Bonet, Jesus S. Ruiz, Lluis Armengol, et al.Razi Khaja, Jaume Bertranpetit, Mariano Rocchi, Elodie Gazave, Nuria L. Bigas, Arcadi Navarro posted to geneorder synteny syntenypaper by maximilianh on 2007-11-04 00:16:54 as along with 2 people and 1 group djkt hpaces Bioinformatics
	The random versus fragile breakage models of chromosome evolution: a matter of resolution. [My Copy] Mol Genet Genomics, Vol. 278, No. 5. (November 2007), pp. 487-491. by T. S. Becker, B. Lenhard posted to geneorder genomicregulatoryblocks synteny syntenypaper by maximilianh on 2007-11-02 18:36:01 as along with 2 people Heute boudinot
	Natural history and evolutionary principles of gene duplication in fungi [My Copy] Nature, Vol. 449, No. 7158. (06 September 2007), pp. 54-61. by Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev posted to geneorder genometrees synteny by maximilianh on 2007-10-27 23:01:50 as along with 20 people and 4 groups Jporci bcondon GustavoLacerda biomcgary gdb schwartzjmc keb45 gjuggler aheilbut dpollard tny dchughes djkt stajich zwang lp2 tzhughes pkm bpcusack dandaman EisenLab G4ID Genetics-of-Gambling Mycology
	SHOT: a web server for the construction of genome phylogenies [My Copy] Trends in Genetics, Vol. 18, No. 3. (01 March 2002), pp. 158-162. by J. Korbel, B. Snel, M. Huynen, P. Bork posted to phylogenomics synteny by maximilianh on 2007-10-23 16:42:19 as along with 1 person calderonv

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fromconnotea	411
motif	171
discovery	124
duplicates	59
scanning	57
synteny	56
enhancer	55
tandem	53
syntenypaper	52
enhancerprediction	43
molecularbiologytechniques	41
combination	36
cns-differences	34
factors	32
cns	31
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wnt	26
review	23
ncrna	22
conserved	21
phylogenomics	21
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notconserved	16
rennes	16
repeated	16
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otx	15
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cluster	12
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insulator	12
disease	11
pwm	11
tools	11
websites	11
chromatin	10
ciona	10
cns-enhancer-screen	10
cns-ranking	10
mirna	10
pwmimprovement	10
randombreakage	10
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dna	9
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genome-papers	8
pitx	8
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application	7
conservation	7
genes	7
genomeregulatoryblocks	7
genomicregulatoryblocks	7
pwmcomparison	7
syntenytools	7
bidirectionalpromoters	6
enhanceosome	6
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position	6
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competition	4
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interchromosomal	4
introns	4
otxpaper	4
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region	4
silencer	4
wholegenomescanning	4
cionapopulationgenetics	3
coding	3
composition	3
copy-number-variation	3
encode	3
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evoluation	3
factorclass	3
genometrees	3
go	3
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matrix	3
mirnaenhancer	3
model-species	3
mutations	3
myarticles	3
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tf	3
thermodynamicalmodels	3
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ascidians	2
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binding	2
bullshitarticles	2
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of	2
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igh	1
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primers	1
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statistics	1
suppressor	1
syntenypapers	1
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tr-reviews	1
turnover	1
word	1
writing	1

maximilianh's synteny [56 articles] Export

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