maximilianh's tandem [53 articles] Export

Recent papers added to maximilianh's library classified by the tag tandem. You can also see everyone's tandem.

	Adaptive evolution of young gene duplicates in mammals. [My Copy] Genome research, Vol. 19, No. 5. (May 2009), pp. 859-867. by Mira V. Han, Jeffery P. Demuth, Casey L. McGrath, Claudio Casola, Matthew W. Hahn posted to duplicates tandem by maximilianh on 2009-05-04 09:35:57 as along with 4 people cmzmasek clearbluespring gjuggler djkt
	A genome-wide view of the spectrum of spontaneous mutations in yeast [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 27. (8 July 2008), pp. 9272-9277. by Michael Lynch, Way Sung, Krystalynne Morris, et al.Nicole Coffey, Christian R. Landry, Erik B. Dopman, W. Joseph Dickinson, Kazufusa Okamoto, Shilpa Kulkarni, Daniel L. Hartl, W. Kelley Thomas posted to duplicates geneorder mutations tandem by maximilianh on 2008-07-03 11:09:59 as along with 6 people operon pavitra gbloeb Annab druvus stevanspringer
	Subfunctionalization of Duplicated Zebrafish pax6 Genes by cis-Regulatory Divergence [My Copy] PLoS Genetics, Vol. 4, No. 2. (1 February 2008), e29. by Dirk A. Kleinjan, Ruth M. Bancewicz, Philippe Gautier, et al.Ralf Dahm, Helia B. Schonthaler, Giuseppe Damante, Anne Seawright, Ann M. Hever, Patricia L. Yeyati, Veronica van Heyningen, Pedro Coutinho posted to cns-differences duplicates synteny tandem by maximilianh on 2008-06-05 23:41:15 as along with 5 people JustinCrocker brant gjuggler emptyhb Stew
	Convergent evolution of clustering of Iroquois homeobox genes across metazoans. [My Copy] Molecular biology and evolution (9 May 2008) by Manuel Irimia, Ignacio Maeso, Jordi Garcia-Fernàndez posted to copy-number-variation duplicates synteny tandem by maximilianh on 2008-05-17 10:01:23 as along with 1 person fhsantanna
	Evidence that strong positive selection drives neofunctionalization in the tandemly duplicated polyhomeotic genes in Drosophila [My Copy] Proceedings of the National Academy of Sciences (1 April 2008), 0710892105. by Steffen Beisswanger, Wolfgang Stephan posted to duplicates tandem by maximilianh on 2008-04-09 14:44:35 as along with 4 people ilyashl oelemento gjuggler smbe2008
	Characterizing the cancer genome in lung adenocarcinoma [My Copy] Nature, Vol. advanced online publication (Nov 2007) by Barbara Weir, Michele Woo, Gad Getz, et al.Sven Perner, Li Ding, Rameen Beroukhim, William Lin, Michael Province, Aldi Kraja, Laura Johnson, Kinjal Shah, Mitsuo Sato, Roman Thomas, Justine Barletta, Ingrid Borecki, Stephen Broderick, Andrew Chang, Derek Chiang, Lucian Chirieac, Jeonghee Cho, Yoshitaka Fujii, Adi Gazdar, Thomas Giordano, Heidi Greulich, Megan Hanna, Bruce Johnson, Mark Kris, Alex Lash, Ling Lin, Neal Lindeman, Elaine Mardis, John Mcpherson, John Minna, Margaret Morgan, Mark Nadel, Mark Orringer, John Osborne, Brad Ozenberger, Alex Ramos, James Robinson, Jack Roth, Valerie Rusch, Hidefumi Sasaki, Frances Shepherd, Carrie Sougnez, Margaret Spitz, Ming S. Tsao, David Twomey, Roel Verhaak, George Weinstock, David Wheeler, Wendy Winckler, Akihiko Yoshizawa, Soyoung Yu, Maureen Zakowski, Qunyuan Zhang, David Beer, Ignacio Wistuba, Mark Watson, Levi Garraway, Marc Ladanyi, William Travis, William Pao, Mark Rubin, Stacey Gabriel, Richard Gibbs, Harold Varmus, Richard Wilson, Eric Lander, Matthew Meyerson posted to genes tandem by maximilianh on 2007-11-05 18:22:02 as
	All duplicates are not equal: the difference between small-scale and genome duplication. [My Copy] Genome Biol, Vol. 8, No. 10. (4 October 2007) by Luke Hakes, John W. Pinney, Simon C. Lovell, Steve G. Oliver, David L. Robertson posted to duplicates tandem by maximilianh on 2007-11-04 00:19:14 as along with 1 person dullhunk
	Tandem repeats and morphological variation [My Copy] posted to geneorder genes tandem by maximilianh on 2007-11-01 22:18:38 as
	Transcriptional similarities, dissimilarities, and conservation of cis-elements in duplicated genes of Arabidopsis. [My Copy] Plant physiology, Vol. 136 (Oct 2004), pp. 3009-3022. by Georg Haberer, Tobias Hindemitt, Blake Meyers, Klaus Mayer posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:07 as
	Making noise about silence: repression of repeated genes in animals. [My Copy] Current opinion in genetics & development, Vol. 10 (Apr 2000), pp. 211-216. by J. Birchler, M. Bhadra, U. Bhadra posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:07 as
	Evolution and divergence of sodium channel genes in vertebrates. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98 (Jun 2001), pp. 7588-7592. by G. Lopreato, Y. Lu, A. Southwell, et al.N. Atkinson, D. Hillis, T. Wilcox, H. Zakon posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:07 as
	Locational distribution of gene functional classes in Arabidopsis thaliana. [My Copy] BMC bioinformatics, Vol. 8 (xx 2007), pp. 112-112. by Michael Riley, Amanda Clare, Ross King posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:07 as
	The majority of recent short DNA insertions in the human genome are tandem duplications. [My Copy] Molecular biology and evolution, Vol. 24 (May 2007), pp. 1190-1197. by Philipp Messer, Peter Arndt posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:07 as
	HomologMiner: looking for homologous genomic groups in whole genomes. [My Copy] Bioinformatics (Oxford, England), Vol. 23 (Apr 2007), pp. 917-925. by Minmei Hou, Piotr Berman, Chih H. Hsu, Robert Harris posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:07 as
	Current topics in genome evolution: molecular mechanisms of new gene formation. [My Copy] Cellular and molecular life sciences : CMLS, Vol. 64 (Mar 2007), pp. 542-554. by D. Babushok, E. Ostertag, Jr H. Kazazian posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:07 as
	Does lack of recombination enhance asymmetric evolution among duplicate genes?: Insights from the Drosophila melanogaster genome. [My Copy] Gene, Vol. 385 (Dec 2006), pp. 89-95. by Yves Clément, Raquel Tavares, Gabriel Marais posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:07 as
	Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice. [My Copy] PLoS computational biology, Vol. 2 (Sep 2006), pp. 115-115. by Carene Rizzon, Loic Ponger, Brandon Gaut posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:07 as
	A roadmap of tandemly arrayed genes in the genomes of human, mouse, and rat. [My Copy] Molecular biology and evolution, Vol. 23 (Nov 2006), pp. 2134-2141. by Valia Shoja, Liqing Zhang posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:07 as
	High rate of recent intron gain and loss in simultaneously duplicated Arabidopsis genes. [My Copy] Molecular biology and evolution, Vol. 23 (Aug 2006), pp. 1548-1557. by David Knowles, Aoife Mclysaght posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:07 as
	Reorganization of adjacent gene relationships in yeast genomes by whole-genome duplication and gene deletion. [My Copy] Molecular biology and evolution, Vol. 23 (Jun 2006), pp. 1136-1143. by Jake Byrnes, Geoffrey Morris, Wen H. Li posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:07 as along with 1 person monkoflight
	Relationship between segmental duplications and repeat sequences in human chromosome 7. [My Copy] Genome informatics. International Conference on Genome Informatics, Vol. 16 (xx 2005), pp. 13-21. by Hiroo Murakami, Sachiyo Aburatani, Katsuhisa Horimoto posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:07 as
	A hotspot of gene order rearrangement by tandem duplication and random loss in the vertebrate mitochondrial genome. [My Copy] Molecular biology and evolution, Vol. 23 (Jan 2006), pp. 227-234. by Diego S. Mauro, David Gower, Rafael Zardoya, Mark Wilkinson posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:07 as
	Rates and patterns of gene duplication and loss in the human genome. [My Copy] Proceedings. Biological sciences / The Royal Society, Vol. 272 (Feb 2005), pp. 277-283. by James Cotton, Roderic Page posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:07 as
	Sequence turnover and tandem repeats in cis-regulatory modules in drosophila. [My Copy] Molecular biology and evolution, Vol. 22 (Apr 2005), pp. 874-885. by Saurabh Sinha, Eric Siggia posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:07 as
	Transcriptional similarities, dissimilarities, and conservation of cis-elements in duplicated genes of Arabidopsis. [My Copy] Plant physiology, Vol. 136 (Oct 2004), pp. 3009-3022. by Georg Haberer, Tobias Hindemitt, Blake Meyers, Klaus Mayer posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:07 as
	Selection for gene clustering by tandem duplication. [My Copy] Annual review of microbiology, Vol. 58 (xx 2004), pp. 119-142. by Andrew Reams, Ellen Neidle posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:07 as
	Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes. [My Copy] The Plant cell, Vol. 16 (Jul 2004), pp. 1667-1678. by Guillaume Blanc, Kenneth Wolfe posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:07 as
	The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. [My Copy] BMC plant biology, Vol. 4 (Jun 2004), pp. 10-10. by Steven Cannon, Arvind Mitra, Andrew Baumgarten, Nevin Young, Georgiana May posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:06 as
	Gene duplication and biased functional retention of paralogs in bacterial genomes. [My Copy] Trends in microbiology, Vol. 12 (Apr 2004), pp. 148-154. by Dirk Gevers, Klaas Vandepoele, Cedric Simillon, Yves van de Peer posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:06 as
	Evolutionary convergence of alternative splicing in ion channels. [My Copy] Trends in genetics : TIG, Vol. 20 (Apr 2004), pp. 171-176. by Richard Copley posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:06 as
	Recent segmental duplications in the working draft assembly of the brown Norway rat. [My Copy] Genome research, Vol. 14 (Apr 2004), pp. 493-506. by Eray Tuzun, Jeffrey Bailey, Evan Eichler posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:06 as
	Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101 (Feb 2004), pp. 1638-1643. by Klaas Vandepoele, Wouter de Vos, John Taylor, Axel Meyer, Yves van de Peer posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:06 as
	The structure and early evolution of recently arisen gene duplicates in the Caenorhabditis elegans genome. [My Copy] Genetics, Vol. 165 (Dec 2003), pp. 1793-1803. by Vaishali Katju, Michael Lynch posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:06 as
	Hox cluster duplications and the opportunity for evolutionary novelties. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100 (Dec 2003), pp. 14603-14606. by Gunte Wagner, Chris Amemiya, Frank Ruddle posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:06 as
	Greedy method for inferring tandem duplication history. [My Copy] Bioinformatics (Oxford, England), Vol. 19 (Aug 2003), pp. 1497-1504. by Louxin Zhang, Bin Ma, Lusheng Wang, Ying Xu posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:06 as
	Evidence for co-evolution of gene order and recombination rate. [My Copy] Nature genetics, Vol. 33 (Mar 2003), pp. 392-395. by Csaba Pál, Laurence Hurst posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:06 as
	Coexpression of neighboring genes in Caenorhabditis elegans is mostly due to operons and duplicate genes. [My Copy] Genome research, Vol. 13 (Feb 2003), pp. 238-243. by Martin Lercher, Thomas Blumenthal, Laurence Hurst posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:05 as
	Clustering of housekeeping genes provides a unified model of gene order in the human genome. [My Copy] Nature genetics, Vol. 31 (Jun 2002), pp. 180-183. by Martin Lercher, Araxi Urrutia, Laurence Hurst posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:05 as
	Reconstructing the duplication history of tandemly repeated genes. [My Copy] Molecular biology and evolution, Vol. 19 (Mar 2002), pp. 278-288. by Olivier Elemento, Olivier Gascuel, Marie P. Lefranc posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:05 as
	Does recombination shape the distribution and evolution of tandemly arrayed genes (TAGs) in the Arabidopsis thaliana genome? [My Copy] Genome research, Vol. 13 (Dec 2003), pp. 2533-2540. by Liqing Zhang, Brandon Gaut posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:05 as
	Extrachromosomal circular DNA of tandemly repeated genomic sequences in Drosophila. [My Copy] Genome research, Vol. 13 (Jun 2003), pp. 1133-1145. by Sarit Cohen, Keren Yacobi, Daniel Segal posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:05 as
	The altered evolutionary trajectories of gene duplicates. [My Copy] Trends in genetics : TIG, Vol. 20 (Nov 2004), pp. 544-549. by Michael Lynch, Vaishali Katju posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:05 as
	On the formation of novel genes by duplication in the Caenorhabditis elegans genome. [My Copy] Molecular biology and evolution, Vol. 23 (May 2006), pp. 1056-1067. by Vaishali Katju, Michael Lynch posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:05 as
	Loss of ancestral genes in the genomic evolution of Ciona intestinalis. [My Copy] Evolution & development, Vol. 7, pp. 196-200. by Austin Hughes, Robert Friedman posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:05 as
	The evolutionary demography of duplicate genes. [My Copy] Journal of structural and functional genomics, Vol. 3 (xx 2003), pp. 35-44. by Michael Lynch, John Conery posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:05 as
	The Evolutionary Fate and Consequences of Duplicate Genes [My Copy] Science, Vol. 290 (Nov 2000), pp. 1151-1155. by Michael Lynch, John Conery posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:05 as
	Sharing of transcription factors after gene duplication in the yeast Saccharomyces cerevisiae. [My Copy] Genetica, Vol. 129 (Mar 2007), pp. 301-308. by Austin Hughes, Robert Friedman posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:05 as
	Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice. [My Copy] PLoS computational biology, Vol. 2 (Sep 2006), pp. 115-115. by Carene Rizzon, Loic Ponger, Brandon Gaut posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:05 as
	Evolution by gene duplication: an update [My Copy] posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:04 as
	On the Formation of Novel Genes by Duplication in the Caenorhabditis elegans Genome -- Katju and Lynch 23 (5): 1056 -- Molecular Biology and Evolution [My Copy] posted to duplicates tandem fromconnotea by maximilianh on 2007-09-23 12:59:04 as

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fromconnotea	411
motif	171
discovery	124
duplicates	59
scanning	57
synteny	56
enhancer	55
tandem	53
syntenypaper	52
enhancerprediction	43
molecularbiologytechniques	41
combination	36
cns-differences	34
factors	32
cns	31
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cross-species-enhancer	28
noalignment	28
wnt	26
review	23
ncrna	22
conserved	21
phylogenomics	21
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phylogeny	18
transcription	18
chipchip	17
promoter	17
ultraconserved	17
notconserved	16
rennes	16
repeated	16
cis-trans	15
otx	15
genome	14
pcr	14
whole	14
cluster	12
enhancerpromotercompatibility	12
insulator	12
disease	11
pwm	11
tools	11
websites	11
chromatin	10
ciona	10
cns-enhancer-screen	10
cns-ranking	10
mirna	10
pwmimprovement	10
randombreakage	10
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dna	9
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genome-papers	8
pitx	8
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application	7
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genes	7
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genomicregulatoryblocks	7
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otxpaper	4
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cionapopulationgenetics	3
coding	3
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copy-number-variation	3
encode	3
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evoluation	3
factorclass	3
genometrees	3
go	3
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matrix	3
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myarticles	3
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tr-reviews	1
turnover	1
word	1
writing	1

maximilianh's tandem [53 articles] Export

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