maximilianh's ultraconserved [17 articles] Export

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	A predictive model for identifying mini-regulatory modules in the mouse genome. [My Copy] Bioinformatics (Oxford, England) (3 December 2008) by Mahesh Yaragatti, Ted Sandler, Lyle Ungar posted to enhancerprediction ultraconserved by maximilianh on 2008-12-06 00:08:04 as along with 6 people TRHvidsten cassj djkt idonaldson druvus operon
	Large number of ultraconserved elements were already present in the jawed vertebrate ancestor. [My Copy] Molecular biology and evolution (3 December 2008) by Jianli Wang, Alison P P. Lee, Rimantas Kodzius, Sydney Brenner, Byrappa Venkatesh posted to ultraconserved by maximilianh on 2008-12-05 13:59:37 as along with 2 people jmeppley djkt
	Identification and characterization of new long conserved noncoding sequences in vertebrates. [My Copy] Mammalian genome : official journal of the International Mammalian Genome Society (18 November 2008) by Yoshiyuki Sakuraba, Toru Kimura, Hiroshi Masuya, et al.Hideki Noguchi, Hideki Sezutsu, K R. Takahasi, Atsushi Toyoda, Ryutaro Fukumura, Takuya Murata, Yoshiyuki Sakaki, Masayuki Yamamura, Shigeharu Wakana, Tetsuo Noda, Toshihiko Shiroishi, Yoichi Gondo posted to ultraconserved ultraconserveddefinition by maximilianh on 2008-11-21 14:45:54 as along with 3 people operon treangen xianjun
	Ultraconserved Elements: Analyses of Dosage Sensitivity, Motifs, and Boundaries. [My Copy] Genetics (28 October 2008) by Charleston W K W. Chiang, Adnan Derti, Daniel Schwartz, Michael F F. Chou, Joel N N. Hirschhorn, Chao-Ting T. Wu posted to ultraconserved by maximilianh on 2008-11-11 16:58:25 as along with 2 people djkt treangen
	Widespread ultraconservation divergence in primates. [My Copy] Molecular biology and evolution, Vol. 25, No. 8. (August 2008), pp. 1668-1676. by I. Ovcharenko posted to ultraconserved by maximilianh on 2008-09-29 14:32:37 as
	Highly similar noncoding genomic DNA sequences: ultraconserved, or merely widespread? [My Copy] Genome / National Research Council Canada = Génome / Conseil national de recherches Canada, Vol. 51, No. 5. (May 2008), pp. 396-397. by D. A. Hickey posted to ultraconserved whyconserved by maximilianh on 2008-04-30 13:01:09 as along with 1 person jfr
	Ultraconservation identifies a small subset of extremely constrained developmental enhancers. [My Copy] Nat Genet (6 January 2008) by Axel Visel, Shyam Prabhakar, Jennifer A A. Akiyama, et al.Malak Shoukry, Keith D D. Lewis, Amy Holt, Ingrid Plajzer-Frick, Veena Afzal, Edward M M. Rubin, Len A A. Pennacchio posted to ultraconserved by maximilianh on 2008-01-09 17:39:02 as along with 6 people cisstem Stew gjuggler emptyhb bpcusack isimpson
	A short ultraconserved sequence drives transcription from an alternate FBN1 promoter. [My Copy] Int J Biochem Cell Biol (2 October 2007) by Gao Guo, Sebastian Bauer, Jochen Hecht, Marcel H H. Schulz, Andreas Busche, Peter N N. Robinson posted to ultraconserved by maximilianh on 2007-11-14 15:53:18 as along with 1 person gjuggler
	28-Way vertebrate alignment and conservation track in the UCSC Genome Browser [My Copy] Genome Res. (5 November 2007), gr.6761107. by Webb Miller, Kate Rosenbloom, Ross C. Hardison, et al.Minmei Hou, James Taylor, Brian Raney, Richard Burhans, David C. King, Robert Baertsch, Daniel Blankenberg, Kosakovsky, Anton Nekrutenko, Belinda Giardine, Robert S. Harris, Svitlana Tyekucheva, Mark Diekhans, Thomas H. Pringle, William J. Murphy, Arthur Lesk, George M. Weinstock, Kerstin Lindblad-Toh, Richard A. Gibbs, Eric S. Lander, Adam Siepel, David Haussler, James W. Kent posted to cns ultraconserved by maximilianh on 2007-11-08 17:57:17 as along with 11 people rschulz aprasad dchughes nklee idonaldson fpattyn gjuggler clearbluespring joavah AaronDarling guhjy
	Ultraconserved Regions Encoding ncRNAs Are Altered in Human Leukemias and Carcinomas. [My Copy] Cancer Cell, Vol. 12, No. 3. (September 2007), pp. 215-229. by G. A. Calin, C. G. Liu, M. Ferracin, et al.T. Hyslop, R. Spizzo, C. Sevignani, M. Fabbri, A. Cimmino, E. J. Lee, S. E. Wojcik, M. Shimizu, E. Tili, S. Rossi, C. Taccioli, F. Pichiorri, X. Liu, S. Zupo, V. Herlea, L. Gramantieri, G. Lanza, H. Alder, L. Rassenti, S. Volinia, T. D. Schmittgen, T. J. Kipps, M. Negrini, C. M. Croce posted to cns ncrna ultraconserved by maximilianh on 2007-11-06 08:09:06 as along with 5 people and 1 group galka8_diploma pengchy jfr andersbj fpattyn microRNA
	Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes. [My Copy] BMC genomics, Vol. 5 (xx 2004), pp. 99-99. by Albin Sandelin, Peter Bailey, Sara Bruce, et al.Pär Engström, Joanna Klos, Wyeth Wasserman, Johan Ericson, Boris Lenhard posted to conserved fromconnotea genomicregulatoryblocks ultraconserved by maximilianh on 2007-09-23 12:59:15 as
	The strength of selection on ultraconserved elements in the human genome. [My Copy] American journal of human genetics, Vol. 80 (Apr 2007), pp. 692-704. by C. T. Chen, J. C. Wang, B. A. Cohen posted to ultraconserved fromconnotea by maximilianh on 2007-09-23 12:59:11 as
	Ultraconserved elements in insect genomes: A highly conserved intronic sequence implicated in the control of homothorax mRNA splicing [My Copy] Genome Research, Vol. 15 (Jun 2005), pp. 800-808. by Evgeny Glazov, Michael Pheasant, Elizabeth Mcgraw, Gill Bejerano, John Mattick posted to ultraconserved fromconnotea by maximilianh on 2007-09-23 12:59:08 as
	Ultraconserved non-coding sequence element controls a subset of spatiotemporal GLI3 expression. [My Copy] Development, growth & differentiation, Vol. 49 (Aug 2007), pp. 543-553. by Zissis Paparidis, Amir Abbasi, Sajid Malik, et al.Debbie Goode, Heather Callaway, Greg Elgar, Esther Degraaff, Javier L. Rios, Rolf Zeller, Karl H. Grzeschik posted to ultraconserved fromconnotea by maximilianh on 2007-09-23 12:59:03 as
	Ultraconserved non-coding sequence element controls a subset of spatiotemporal GLI3 expression. [My Copy] Development, growth & differentiation, Vol. 49 (Aug 2007), pp. 543-553. by Zissis Paparidis, Amir Abbasi, Sajid Malik, et al.Debbie Goode, Heather Callaway, Greg Elgar, Esther Degraaff, Javier L. Rios, Rolf Zeller, Karl H. Grzeschik posted to ultraconserved fromconnotea by maximilianh on 2007-09-23 12:59:02 as
	Deletion of Ultraconserved Elements Yields Viable Mice. [My Copy] PLoS Biol, Vol. 5 (Sep 2007), pp. 234-234. by Nadav Ahituv, Yiwen Zhu, Axel Visel, et al.Amy Holt, Veena Afzal, Len Pennacchio, Edward Rubin posted to ultraconserved fromconnotea by maximilianh on 2007-09-23 12:59:02 as
	Ultraconserved Regions Encoding ncRNAs Are Altered in Human Leukemias and Carcinomas. [My Copy] Cancer cell, Vol. 12 (Sep 2007), pp. 215-229. by George Calin, Chang G. Liu, Manuela Ferracin, et al.Terry Hyslop, Riccardo Spizzo, Cinzia Sevignani, Muller Fabbri, Amelia Cimmino, Eun Lee, Sylwia Wojcik, Masayoshi Shimizu, Esmerina Tili, Simona Rossi, Cristian Taccioli, Flavia Pichiorri, Xiuping Liu, Simona Zupo, Vlad Herlea, Laura Gramantieri, Giovanni Lanza, Hansjuerg Alder, Laura Rassenti, Stefano Volinia, Thomas Schmittgen, Thomas Kipps, Massimo Negrini, Carlo Croce posted to ultraconserved fromconnotea by maximilianh on 2007-09-23 12:59:00 as

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fromconnotea	411
motif	173
discovery	126
duplicates	59
scanning	57
synteny	56
enhancer	55
tandem	53
syntenypaper	52
enhancerprediction	43
molecularbiologytechniques	41
combination	36
cns-differences	34
factors	32
cns	31
geneorder	30
cross-species-enhancer	28
noalignment	28
wnt	26
review	23
ncrna	22
conserved	21
phylogenomics	21
alignment	19
chipchip	18
phylogeny	18
transcription	18
promoter	17
ultraconserved	17
notconserved	16
rennes	16
repeated	16
cis-trans	15
otx	15
genome	14
pcr	14
whole	14
cluster	12
enhancerpromotercompatibility	12
insulator	12
disease	11
pwm	11
tools	11
websites	11
chromatin	10
ciona	10
cns-enhancer-screen	10
cns-ranking	10
mirna	10
pwmimprovement	10
randombreakage	10
cns-collaboration	9
dna	9
3dstructure	8
cns-similarity	8
genome-papers	8
pitx	8
promoters	8
application	7
conservation	7
genes	7
genomeregulatoryblocks	7
genomicregulatoryblocks	7
pwmcomparison	7
syntenytools	7
bidirectionalpromoters	6
enhanceosome	6
enhancer-screen	6
enhancer-vertebrate-invertebrate	6
long-range	6
orthology	6
phenotype	6
position	6
promoterprediction	6
redundancy	6
snp	6
chipseq	5
comparative	5
enhancer-and-repeats	5
enhancerdistances	5
genecoregulation	5
methylation	5
microrna	5
similarity	5
structure	5
textmining	5
validated	5
antisensetranscription	4
comparison	4
competition	4
enhancersharing	4
expression	4
footprinting	4
interchromosomal	4
introns	4
otxpaper	4
recognition	4
region	4
silencer	4
wholegenomescanning	4
cionapopulationgenetics	3
coding	3
composition	3
copy-number-variation	3
encode	3
enhancerincodingregion	3
enhancer-prediction	3
evoluation	3
factorclass	3
genometrees	3
go	3
interaction	3
inter-cns-distances	3
matrix	3
mirnaenhancer	3
model-species	3
mutations	3
myarticles	3
ncrnas	3
phylotypicstage	3
promoter-minimal	3
regions	3
regulatory	3
rna-binding	3
syntenyorientation	3
term_recognition	3
tf	3
thermodynamicalmodels	3
trainingset	3
3putr	2
ascidians	2
assayscisregwetlab	2
binding	2
bullshitarticles	2
cellsortingbasedanalysis	2
ciona-gene-annotation	2
cns-database	2
codingconservation	2
core	2
drosophila	2
enhancer-stage-specificity	2
factorinteractions	2
genomiccontext	2
grn	2
histones	2
jshypotheses	2
mammals	2
microarray	2
molecularbiologytools	2
ncrna-long	2
networks	2
of	2
pituitary	2
pluripotency	2
polymorphism	2
prediction	2
protocols	2
pvalue-multiplicity	2
rearrangement	2
regulatory-flexibility	2
replicationorigins	2
site-prediction	2
spacing	2
strengthofmatch	2
tfsynergy	2
ultraconserveddefinition	2
whyconserved	2
applicationbioinf	1
arx	1
autoregulation	1
bioinformatics	1
books	1
cell-cultures	1
ciona-gene-annotations	1
cisregdatabase	1
cns-difference	1
cns-enhance	1
cns-enhancer	1
coexpression	1
decoy	1
degeneratesites	1
dlx	1
doublets	1
drosophia	1
drosphila	1
duplicatese	1
element	1
enhancer-contextanalysis	1
factorsclass	1
fastindexing	1
fugu	1
genefamilyfootprinting	1
genemodels	1
generalregulation	1
generegulatorynetworks	1
gibbs	1
grns	1
hmm	1
igh	1
impossible	1
insertionsdeletions	1
intra-primate	1
kernel	1
noaccess	1
nomotif	1
notconservedfunction	1
nucleosome	1
olfactoryreceptors	1
pax6	1
phylogenytools	1
positiveselection	1
primers	1
purificationfromdna	1
sites	1
smarts	1
statistics	1
suppressor	1
syntenypapers	1
transgenesis	1
tr-reviews	1
turnover	1
word	1
writing	1

maximilianh's ultraconserved [17 articles] Export

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