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	Microbial community gene expression in ocean surface waters [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 10. (11 March 2008), pp. 3805-3810. by Jorge Frias-Lopez, Yanmei Shi, Gene W. Tyson, et al.Maureen L. Coleman, Stephan C. Schuster, Sallie W. Chisholm, Edward F. DeLong posted to bioinformatics community ecology expression marine metatranscriptomics ocean by mcox on 2008-09-29 18:46:27 as along with 10 people and 3 groups hwright druvus elbrodie idoerg bluto skembel tmmurali vaulot mjetten jlgreen microbiology_nijmegen Green Lab iSEEM
	Navigating gene expression using microarrays [mdash] a technology review [My Copy] Nat Cell Biol, Vol. 3, No. 8. (August 2001), pp. E190-E195. by Almut Schulze, Julian Downward posted to bioinformatics microarray review by mcox on 2008-05-19 22:34:31 as along with 8 people and 2 groups kentz ziquje numata alokm balicea dchughes jo_davies ale G4ID Genetics-of-Gambling
	Application of tetranucleotide frequencies for the assignment of genomic fragments [My Copy] Environmental Microbiology, Vol. 6, No. 9. (September 2004), pp. 938-947. by Hanno Teeling, Anke Meyerdierks, Margarete Bauer, Rudolf Amann, Frank O. Glöckner posted to bioinformatics genomics metagenomics methods tetranucleotide by mcox on 2008-05-19 22:15:07 as along with 7 people dakelley Thaverkamp azazello druvus michC bluto george_g
	Integration of Microbial Ecology and Statistics: a Test To Compare Gene Libraries [My Copy] Appl. Environ. Microbiol., Vol. 70, No. 9. (1 September 2004), pp. 5485-5492. by Patrick D. Schloss, Bret R. Larget, Jo Handelsman posted to bioinformatics clone library statistics by mcox on 2008-05-19 21:52:20 as along with 2 people and 1 group jmeppley djkt iSEEM
	Pandit: a database of protein and associated nucleotide domains with inferred trees. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 12. (12 August 2003), pp. 1556-1563. by S. Whelan, P. I. de Bakker, N. Goldman posted to bioinformatics database functional pandit phylogeny by mcox on 2008-05-19 21:49:21 as along with 1 person and 1 group rvosa FAB-lab
	Design of long oligonucleotide probes for functional gene detection in a microbial community [My Copy] Bioinformatics, Vol. 21, No. 22. (15 November 2005), pp. 4092-4100. by Won-Hyong Chung, Sung-Keun Rhee, Jin-Woo Bae, Zhe-Xue Quan, Yong-Ha Park posted to bioinformatics design functional hpd phylogeny probe by mcox on 2008-05-19 21:23:23 as along with 3 people stsaft cthachuk GeeSharpMinor
	Improvement of oligonucleotide probe design criteria for functional gene microarrays in environmental applications. [My Copy] Appl Environ Microbiol, Vol. 72, No. 2. (February 2006), pp. 1688-1691. by J. Liebich, C. W. Schadt, S. C. Chong, Z. He, S. K. Rhee, J. Zhou posted to bioinformatics diversity methods microarray phylochip by mcox on 2008-05-19 18:06:01 as along with 1 person GeeSharpMinor
	G-InforBIO: integrated system for microbial genomics [My Copy] BMC Bioinformatics, Vol. 7 (04 August 2006), 368. by Naoto Tanaka, Takashi Abe, Satoru Miyazaki, Hideaki Sugawara posted to bioinformatics genomics methods by mcox on 2008-05-19 17:54:15 as
	$My PDF lozupone_06_unifrac.pdf$ UniFrac - An online tool for comparing microbial community diversity in a phylogenetic context [My Copy] BMC Bioinformatics, Vol. 7 (07 August 2006), 371. by Catherine Lozupone, Micah Hamady, Rob Knight posted to bioinformatics methods phylogeny by mcox on 2008-05-19 17:45:39 as along with 3 people and 1 group esyoun skembel djkt iSEEM
	Divergence and Redundancy of 16S rRNA Sequences in Genomes with Multiple rrn Operons [My Copy] J. Bacteriol., Vol. 186, No. 9. (1 May 2004), pp. 2629-2635. by Silvia G. Acinas, Luisa A. Marcelino, Vanja Klepac-Ceraj, Martin F. Polz posted to 16s bioinformatics diversity genomics phylogeny by mcox on 2008-05-19 17:31:23 as along with 2 people rec3141 Olaf_Ilzins
	Bellerophon: a program to detect chimeric sequences in multiple sequence alignments [My Copy] Bioinformatics, Vol. 20, No. 14. (22 September 2004), pp. 2317-2319. by Thomas Huber, Geoffrey Faulkner, Philip Hugenholtz posted to 16s bioinformatics chimeras methods by mcox on 2008-05-15 16:08:27 as along with 3 people and 1 group ajsferreira esyoun djkt iSEEM
	Mining genomes and 'metagenomes' for novel catalysts. [My Copy] Current opinion in biotechnology, Vol. 16, No. 6. (December 2005), pp. 588-593. by M. Ferrer, F. Martínez-Abarca, P. N. Golyshin posted to bioinformatics metagenomics methods screening by mcox on 2008-05-15 16:05:06 as
	A quantitative map of nucleotide substitution rates in bacterial rRNA. [My Copy] Nucleic acids research, Vol. 24, No. 17. (1 September 1996), pp. 3381-3391. by Y. Van de Peer, S. Chapelle, R. De Wachter posted to 16s bioinformatics diversity rrna by mcox on 2008-05-15 16:02:49 as
	At Least 1 in 20 16S rRNA Sequence Records Currently Held in Public Repositories Is Estimated To Contain Substantial Anomalies [My Copy] Appl. Environ. Microbiol., Vol. 71, No. 12. (1 December 2005), pp. 7724-7736. by Kevin E. Ashelford, Nadia A. Chuzhanova, John C. Fry, Antonia J. Jones, Andrew J. Weightman posted to 16s bioinformatics chimeras database diversity by mcox on 2008-05-15 16:00:46 as along with 2 people esyoun nghoffma
	Phylogeny estimation: traditional and Bayesian approaches. [My Copy] Nat Rev Genet, Vol. 4, No. 4. (April 2003), pp. 275-284. by M. Holder, P. O. Lewis posted to bayesian bioinformatics comparative methods phylogeny trees by mcox on 2008-05-15 15:57:09 as along with 3 people operon balajis fhsantanna
	CDART: protein homology by domain architecture. [My Copy] Genome Res, Vol. 12, No. 10. (October 2002), pp. 1619-1623. by L. Y. Geer, M. Domrachev, D. J. Lipman, S. H. Bryant posted to bioinformatics domain methods protein by mcox on 2008-05-15 15:49:56 as along with 3 people druvus imouthesmp cjeans
	Application of a newly developed ARB software-integrated tool for in silico terminal restriction fragment length polymorphism analysis reveals the dominance of a novel pmoA cluster in a forest soil. [My Copy] Applied and environmental microbiology, Vol. 71, No. 3. (March 2005), pp. 1671-1673. by P. Ricke, S. Kolb, G. Braker posted to arb bioinformatics functional soil trflp by mcox on 2008-05-13 21:28:14 as
	NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes [My Copy] Nucl. Acids Res., Vol. 34, No. suppl_2. (1 July 2006), pp. W394-399. by T. Z. Desantis, P. Hugenholtz, K. Keller, et al.E. L. Brodie, N. Larsen, Y. M. Piceno, R. Phan, G. L. Andersen posted to 16s arb bioinformatics by mcox on 2008-05-13 21:24:28 as along with 5 people and 1 group sim82 esyoun jmeppley nghoffma djkt iSEEM
	Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB [My Copy] Appl. Environ. Microbiol., Vol. 72, No. 7. (1 July 2006), pp. 5069-5072. by T. Z. DeSantis, P. Hugenholtz, N. Larsen, et al.M. Rojas, E. L. Brodie, K. Keller, T. Huber, D. Dalevi, P. Hu, G. L. Andersen posted to 16s arb bioinformatics methods by mcox on 2008-05-13 21:21:19 as along with 3 people and 1 group esyoun idoerg djkt iSEEM
	Introducing TreeClimber, a test to compare microbial community structures. [My Copy] Applied and environmental microbiology, Vol. 72, No. 4. (April 2006), pp. 2379-2384. by P. D. Schloss, J. Handelsman posted to bioinformatics community diversity structure by mcox on 2008-05-12 21:05:50 as along with 2 people and 1 group esyoun djkt iSEEM
	Identification of Eukaryotic Open Reading Frames in Metagenomic cDNA Libraries Made from Environmental Samples [My Copy] Appl. Environ. Microbiol., Vol. 72, No. 1. (1 January 2006), pp. 135-143. by Susan Grant, William D. Grant, Don A. Cowan, et al.Brian E. Jones, Yanhe Ma, Antonio Ventosa, Shaun Heaphy posted to bioinformatics metagenomics methods by mcox on 2008-05-12 20:19:04 as along with 1 person wxg119
	Comparative Genomics of DNA Fragments from Six Antarctic Marine Planktonic Bacteria [My Copy] Appl. Environ. Microbiol., Vol. 72, No. 2. (1 February 2006), pp. 1532-1541. by Joseph J. Grzymski, Brandon J. Carter, Edward F. Delong, Robert A. Feldman, Amir Ghadiri, Alison E. Murray posted to bioinformatics diversity marine metagenomics screening by mcox on 2008-05-12 20:03:28 as along with 2 people jmeppley evodeva
	RNAmmer: consistent and rapid annotation of ribosomal RNA genes [My Copy] Nucl. Acids Res., Vol. 35, No. 9. (14 May 2007), pp. 3100-3108. by Karin Lagesen, Peter Hallin, Einar A. Rodland, Hans-Henrik Staerfeldt, Torbjorn Rognes, David W. Ussery posted to 16s bioinformatics methods by mcox on 2008-05-12 20:00:47 as along with 2 people tfuji timflutre
	ARB: a software environment for sequence data. [My Copy] Nucleic acids research, Vol. 32, No. 4. (25 February 2004), pp. 1363-1371. by Wolfgang Ludwig, Oliver Strunk, Ralf Westram, et al.Lothar Richter, Harald Meier, Yadhukumar, Arno Buchner, Tina Lai, Susanne Steppi, Gangolf Jobb, Wolfram Förster, Igor Brettske, Stefan Gerber, Anton W. Ginhart, Oliver Gross, Silke Grumann, Stefan Hermann, Ralf Jost, Andreas König, Thomas Liss, Ralph Lüssmann, Michael May, Björn Nonhoff, Boris Reichel, Robert Strehlow, Alexandros Stamatakis, Norbert Stuckmann, Alexander Vilbig, Michael Lenke, Thomas Ludwig, Arndt Bode, Karl-Heinz H. Schleifer posted to 16s arb bioinformatics functional methods by mcox on 2008-05-12 19:58:55 as along with 6 people michaelbarton sim82 stharward suzannevdVelde florisbuijzen Vincent_Rouilly
	Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. [My Copy] Applied and environmental microbiology, Vol. 71, No. 3. (March 2005), pp. 1501-1506. by P. D. Schloss, J. Handelsman posted to 16s bioinformatics clone diversity library statistics by mcox on 2008-05-12 19:57:30 as along with 4 people and 1 group idoerg melissa_wos sconlan djkt iSEEM
	Chimeric 16S rDNA sequences of diverse origin are accumulating in the public databases. [My Copy] International journal of systematic and evolutionary microbiology, Vol. 53, No. Pt 1. (January 2003), pp. 289-293. by P. Hugenholtzt, T. Huber posted to 16s bioinformatics chimeras phylogeny by mcox on 2008-05-12 19:41:39 as
	New approaches to analyzing microbial biodiversity data. [My Copy] Current opinion in microbiology, Vol. 6, No. 3. (June 2003), pp. 282-287. by B. J. Bohannan, J. Hughes posted to bioinformatics diversity ecology methods statistics by mcox on 2008-05-12 18:17:53 as along with 1 person liucun
	A computer analysis of primer and probe hybridization potential with bacterial small-subunit rRNA sequences. [My Copy] Applied and environmental microbiology, Vol. 62, No. 3. (March 1996), pp. 872-879. by C. F. Brunk, E. Avaniss-Aghajani, C. A. Brunk posted to 16s bioinformatics methods primer by mcox on 2008-05-12 17:58:18 as
	Comparative metagenomics of microbial communities. [My Copy] Science (New York, N.Y.), Vol. 308, No. 5721. (22 April 2005), pp. 554-557. by Susannah Green G. Tringe, Christian von Mering, Arthur Kobayashi, et al.Asaf A. Salamov, Kevin Chen, Hwai W. Chang, Mircea Podar, Jay M. Short, Eric J. Mathur, John C. Detter, Peer Bork, Philip Hugenholtz, Edward M. Rubin posted to bioinformatics diversity ecology metagenomics methods rarefaction by mcox on 2008-05-12 17:04:17 as along with 19 people and 6 groups CorinYeats hwright skembel Thaverkamp Scis0000002 idoerg jbhiatt kozo-ni jmeppley AaronDarling azazello wenhan sgoetz bluto vrich sanchezbuelna mjetten jlgreen djkt Orengo Group Journal Picks Microbial-Ecology anammox microbiology_nijmegen Green Lab iSEEM
	MetaGene: prokaryotic gene finding from environmental genome shotgun sequences [My Copy] Nucl. Acids Res., Vol. 34, No. 19. (14 November 2006), pp. 5623-5630. by Hideki Noguchi, Jungho Park, Toshihisa Takagi posted to bioinformatics methods orf by mcox on 2008-05-12 17:01:30 as along with 5 people and 1 group dakelley Thaverkamp jlgreen jmeppley alexl iSEEM
	New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras. [My Copy] Applied and environmental microbiology, Vol. 72, No. 9. (September 2006), pp. 5734-5741. by K. E. Ashelford, N. A. Chuzhanova, J. C. Fry, A. J. Jones, A. J. Weightman posted to 16s bioinformatics diversity methods by mcox on 2008-05-12 17:00:18 as along with 1 person esyoun

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mcox's bioinformatics [31 articles] Export Sort

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