mdimmic's library 152 articles Export

	Pathological rate matrices: from primates to pathogens [My Copy] BMC Bioinformatics, Vol. 9 (19 December 2008), 550. by Harold, Gavin A. Huttley posted to phylogenetic-methods by mdimmic on 2008-12-23 17:34:50 as
	Predicting Human Interactive Learning by Regret-Driven Neural Networks [My Copy] Science, Vol. 319, No. 5866. (22 February 2008), pp. 1111-1113. by Davide Marchiori, Massimo Warglien posted to economics psychology by mdimmic on 2008-03-03 18:57:39 as along with 6 people and 1 group sen_cheng brian Koh shigepong zwang shivakmr VisionLab
	Random Forest Models To Predict Aqueous Solubility [My Copy] Journal of Chemical Information and Modeling, Vol. 47, No. 1. (1 January 2007), pp. 150-158. by David S. Palmer, Noel M. O'Boyle, Robert C. Glen, John B. O. Mitchell posted to cheminformatics by mdimmic on 2008-01-15 16:12:42 as along with 1 person ucbcjbm
	Why Are Some Properties More Difficult To Predict than Others? A Study of QSPR Models of Solubility, Melting Point, and Log P [My Copy] Journal of Chemical Information and Modeling, Vol. 48, No. 1. (1 January 2008), pp. 220-232. by Laura D. Hughes, David S. Palmer, Florian Nigsch, John B. O. Mitchell posted to cheminformatics by mdimmic on 2008-01-15 16:11:49 as along with 3 people ucbcjbm daevans ghula11
	High-Throughput Lipophilicity Measurement with Immobilized Artificial Membranes [My Copy] J. Med. Chem., Vol. 48, No. 7. (7 April 2005), pp. 2571-2576. by B. Faller, H. P. Grimm, F. Loeuillet-Ritzler, S. Arnold, X. Briand posted to chemistry-analytical by mdimmic on 2008-01-15 16:10:11 as
	High-Throughput log P Determination by Ultraperformance Liquid Chromatography: A Convenient Tool for Medicinal Chemists. [My Copy] J Med Chem (12 January 2008) by Yveline Henchoz, Davy Guillarme, Serge Rudaz, Jean-Luc L. Veuthey, Pierre-Alain A. Carrupt posted to chemistry-analytical by mdimmic on 2008-01-15 16:09:31 as
	Applied bioinformatics for the identification of regulatory elements [My Copy] Nature Reviews Genetics, Vol. 5, No. 4. (01 April 2004), pp. 276-287. by Wyeth W. Wasserman, Albin Sandelin posted to machine-learning review transcription-factor by mdimmic on 2007-12-01 01:22:40 as along with 4 people Dulce cirillod mycitation moborg
	The Scaffold Tree - Visualization of the Scaffold Universe by Hierarchical Scaffold Classification [My Copy] J. Chem. Inf. Model., Vol. 47, No. 1. (22 January 2007), pp. 47-58. by A. Schuffenhauer, P. Ertl, S. Roggo, S. Wetzel, M. A. Koch, H. Waldmann posted to cheminformatics by mdimmic on 2007-11-27 19:40:10 as along with 5 people sschurer jerome dgruiz JALumley sithmein
	Natural Product-likeness Score and Its Application for Prioritization of Compound Libraries. [My Copy] J Chem Inf Model (23 November 2007) by Peter Ertl, Silvio Roggo, Ansgar Schuffenhauer posted to cheminformatics natural-products by mdimmic on 2007-11-27 17:25:39 as along with 1 person jerome_ucsf_slb
	Stochastic inhibitor release and binding from single-enzyme molecules [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 45. (6 November 2007), pp. 17680-17685. by Hans H. Gorris, David M. Rissin, David R. Walt posted to nanodetection by mdimmic on 2007-11-09 21:36:31 as along with 1 person cactus
	SuperTarget and Matador: resources for exploring drug-target relationships. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (16 January 2008) by S. Günther, M. Kuhn, M. Dunkel, et al.M. Campillos, C. Senger, E. Petsalaki, J. Ahmed, E. G. Urdiales, A. Gewiess, L. J. Jensen, R. Schneider, R. Skoblo, R. B. Russell, P. E. Bourne, P. Bork, R. Preissner posted to cheminformatics drug-development ligand-docking by mdimmic on 2007-11-08 19:40:40 as along with 8 people mitko dansullivanblk zimbo1 guhjy daevans massivemayhem Evangelia larsjuhljensen
	Setting up a large set of protein-ligand PDB complexes for the development and validation of knowledge-based docking algorithms. [My Copy] BMC bioinformatics, Vol. 8 (25 August 2007), 310. by L. A. Diago, P. Morell, L. Aguilera, E. Moreno posted to ligand-docking by mdimmic on 2007-09-17 23:14:05 as along with 3 people mijogiffin flbarroso massivemayhem
	Recent Evolutions of Multiple Sequence Alignment Algorithms [My Copy] PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e123. by Cédric Notredame posted to review sequence-alignment by mdimmic on 2007-09-17 22:59:02 as along with 11 people and 2 groups druvus treangen rvosa timflutre stajich zwang cabbagezs groepl yoanjacquemin marti smbe2008 Bioinformatics FAB-lab
	Treeness Triangles: Visualizing the Loss of Phylogenetic Signal [My Copy] Mol Biol Evol, Vol. 24, No. 9. (1 September 2007), pp. 2029-2039. by Wt White, Sf Hills, R. Gaddam, Br Holland, David Penny posted to phylogenetic-methods by mdimmic on 2007-08-31 17:46:50 as along with 1 person dparks
	Single-Molecule, Motion-Based DNA Sequencing Using RNA Polymerase [My Copy] Science, Vol. 313, No. 5788. (11 August 2006), 801. by William J. Greenleaf, Steven M. Block posted to nanodetection protein-dna-interaction by mdimmic on 2006-11-09 19:28:36 as along with 3 people and 2 groups dayjm dchughes eyliu G4ID Genetics-of-Gambling
	Capturing expert knowledge with argumentation: a case study in bioinformatics [My Copy] Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 924-933. by Benjamin R. Jefferys, Lawrence A. Kelley, Marek J. Sergot, John Fox, Michael J. Sternberg posted to cheminformatics sar by mdimmic on 2006-09-07 21:50:11 as along with 3 people and 2 groups vavi marcius eweaver BioinfoCIPF SGU-CIPF
	Using argumentation for absolute reasoning about the potential toxicity of chemicals. [My Copy] J Chem Inf Comput Sci, Vol. 43, No. 5. (t 2003), pp. 1364-1370. by P. N. Judson, C. A. Marchant, J. D. Vessey posted to cheminformatics sar by mdimmic on 2006-09-07 21:47:58 as along with 1 person calvin
	A comprehensive approach to argumentation. [My Copy] J Chem Inf Comput Sci, Vol. 43, No. 5. (t 2003), pp. 1356-1363. by P. N. Judson, J. D. Vessey posted to cheminformatics sar by mdimmic on 2006-09-07 21:46:25 as
	Tactile Teaching: Exploring Protein Structure/Function Using Physical Models [My Copy] Biochemistry and Molecular Biology Education, Vol. 34, No. 4. (1 July 2006), pp. 247-254. by Tim Herman, Jennifer Morris, Shannon Colton, et al.Ann Batiza, Michael Patrick, Margaret Franzen, David S. Goodsell posted to protein teaching by mdimmic on 2006-09-07 20:51:46 as along with 2 people and 2 groups dchughes alanwolf G4ID Genetics-of-Gambling
	Prediction of Function Divergence in Protein Families Using the Substitution Rate Variation Parameter Alpha [My Copy] Molecular Biology and Evolution, Vol. 23, No. 7. (1 July 2006), pp. 1406-1413. by Abhiman, Saraswathi, Daub, O. Carsten, Sonnhammer, L. L. Erik posted to functional-shift by mdimmic on 2006-06-13 17:15:24 as
	Structure-based design of a second-generation Lyme disease vaccine based on a C-terminal fragment of Borrelia burgdorferi OspA. [My Copy] J Mol Biol, Vol. 350, No. 2. (8 July 2005), pp. 290-299. by S. Koide, X. Yang, X. Huang, J. J. Dunn, B. J. Luft posted to epitope-design by mdimmic on 2006-05-22 21:39:14 as
	Enhanced immunogenicity of a conformational epitope of human T-lymphotropic virus type 1 using a novel chimeric peptide [My Copy] Vaccine, Vol. 19, No. 9-10. (8 December 2000), pp. 1068-1081. by Melanie Frangione-Beebe, Bjorn Albrecht, Naveen Dakappagari, et al.Travis R. Rose, Charles L. Brooks, Steven P. Schwendeman, Michael D. Lairmore, Pravin T. Kaumaya posted to epitope-design by mdimmic on 2006-05-22 21:12:18 as
	Conformational HER-2/neu B-cell Epitope Peptide Vaccine Designed to Incorporate Two Native Disulfide Bonds Enhances Tumor Cell Binding and Antitumor Activities [My Copy] J. Biol. Chem., Vol. 280, No. 1. (7 January 2005), pp. 54-63. by Naveen K. Dakappagari, Kenneth D. Lute, Sharad Rawale, et al.Joan T. Steele, Stephanie D. Allen, Gary Phillips, Todd R. Reilly, Pravin T. Kaumaya posted to epitope-design by mdimmic on 2006-05-22 21:10:20 as
	Synthesis, refolding and protective immune responses of a potential antigen for human Respiratory Syncytial Virus vaccine. [My Copy] J Pept Res, Vol. 62, No. 1. (July 2003), pp. 27-36. by C. Klinguer-Hamour, M. C. Bussat, H. Plotnicky, et al.D. Velin, N. Corvaïa, T. Nguyen, A. Beck posted to epitope-design by mdimmic on 2006-05-19 23:54:46 as
	Codon usage pattern in alpha 2(I) chain domain of chicken type I collagen and its implications for the secondary structure of the mRNA and the synthesis pauses of the collagen. [My Copy] Biochem Biophys Res Commun, Vol. 167, No. 2. (16 March 1990), pp. 772-776. by M. Zama posted to codon-usage by mdimmic on 2006-05-12 16:46:37 as
	Folding of the MS2 coat protein in Escherichia coli is modulated by translational pauses resulting from mRNA secondary structure and codon usage: a hypothesis. [My Copy] J Theor Biol, Vol. 162, No. 2. (21 May 1993), pp. 243-252. by Y. Guisez, J. Robbens, E. Remaut, W. Fiers posted to codon-usage by mdimmic on 2006-05-12 16:45:16 as
	Dynamic complex formation during the yeast cell cycle. [My Copy] Science (New York, N.Y.), Vol. 307, No. 5710. (4 February 2005), pp. 724-727. by U. de Lichtenberg, L. J. Jensen, S. Brunak, P. Bork posted to ipam protein-interaction by mdimmic on 2005-12-12 18:25:25 as along with 12 people and 1 group chica chad_davis balajis wnpx koller massivemayhem cjeans arne phoenixzxl larsjuhljensen carlk gjuggler dIEMoSIRIS
	Closed and open conformations of the lid domain induce different patterns of human pancreatic lipase antigenicity and immunogenicity [My Copy] Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics, Vol. 1753, No. 2. (1 December 2005), pp. 247-256. by Hubert Halimi, Josiane De Caro, Frederic Carriere, Alain De Caro posted to epitope-design by mdimmic on 2005-11-23 17:45:54 as
	Choosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding Sequences. [My Copy] Mol Biol Evol (21 September 2005) by Beth Shapiro, Andrew Rambaut, Alexei J J. Drummond posted to phylogenetic-methods protein-evolution by mdimmic on 2005-11-23 16:33:05 as
	Tracing specific synonymous codon-secondary structure correlations through evolution. [My Copy] J Mol Evol, Vol. 56, No. 4. (April 2003), pp. 473-484. by M. Oresic, M. Dehn, D. Korenblum, D. Shalloway posted to codon-usage by mdimmic on 2005-11-11 21:59:35 as
	Evidence for an Alpha Helical T Cell Epitope in the C-Terminus of the Main Birch Pollen Allergen Bet V 1 [My Copy] Biochemical and Biophysical Research Communications, Vol. 223, No. 1. (5 June 1996), pp. 187-192. by Andreas J. Kungl, Markus Susani, Almut Lindemann, et al.Mischa Machius, Antonie J. Visser, Otto Scheiner, Dietrich Kraft, Michael Breitenbach, Manfred Auer posted to epitope-design by mdimmic on 2005-11-11 00:09:00 as
	NdPASA: a pairwise sequence alignment server for distantly related proteins. [My Copy] Bioinformatics, Vol. 21, No. 19. (1 October 2005), pp. 3803-3805. by W. Li, J. Wang, J. A. Feng posted to homolog-detection sequence-alignment by mdimmic on 2005-10-28 00:43:44 as
	Combining phylogenetic motif discovery and motif clustering to predict co-regulated genes. [My Copy] Bioinformatics, Vol. 21, No. 20. (15 October 2005), pp. 3832-3839. by S. T. Jensen, L. Shen, J. S. Liu posted to homolog-detection microarrays by mdimmic on 2005-10-28 00:39:34 as along with 1 person Dulce
	Microarrays of small molecules embedded in biodegradable polymers for use in mammalian cell-based screens. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 46. (16 November 2004), pp. 16144-16149. by S. N. Bailey, D. M. Sabatini, B. R. Stockwell posted to high-throughput-screening microarrays by mdimmic on 2005-10-26 22:33:00 as along with 1 person and 2 groups dbk streptomyces dbk-lab
	Mimotopes: realization of an unlikely concept [My Copy] Journal of Molecular Recognition, Vol. 13, No. 6. (15 November 2000), pp. 352-359. by R. H. Meloen, W. C. Puijk, J. W. Slootstra posted to epitope-design review by mdimmic on 2005-10-15 00:08:57 as
	Antigenicity and Immunogenicity of Synthetic Peptides [My Copy] Biologicals, Vol. 29, No. 3-4. (September 2001), pp. 209-213. by M. H. V. Van Regenmortel posted to epitope-design review by mdimmic on 2005-10-14 23:41:10 as
	Conformational Preferences of a Peptide Corresponding to the Major Antigenic Determinant of Foot-and- Mouth Disease Virus: Implications for Peptide-Vaccine Approaches [My Copy] Archives of Biochemistry and Biophysics, Vol. 341, No. 2. (15 May 1997), pp. 360-369. by Gonzalo de Prat-Gay posted to epitope-design by mdimmic on 2005-10-13 23:43:30 as
	Analysis of accessible surface of residues in proteins. [My Copy] Protein Sci, Vol. 12, No. 7. (July 2003), pp. 1406-1417. by L. Lins, A. Thomas, R. Brasseur posted to epitope-design protein-interaction by mdimmic on 2005-10-13 23:15:18 as along with 2 people melo_mcr ashaytan
	Potent epitopes derived from Fasciola gigantica cathepsin L1 in peptide-based immunoassay for the serodiagnosis of human fascioliasis [My Copy] Diagnostic Microbiology and Infectious Disease, Vol. In Press, Corrected Proof by Pewpan M. Intapan, Chairat Tantrawatpan, Wanchai Maleewong, Sopit Wongkham, Chaisiri Wongkham, Kunio Nakashima posted to epitope-design nematodes by mdimmic on 2005-10-05 00:52:32 as
	An in silico method using an epitope motif database for predicting the location of antigenic determinants on proteins in a structural context [My Copy] Journal of Molecular Recognition (29 September 2005) by Vincent Batori, Esben P. Friis, Henrik Nielsen, Erwin L. Roggen posted to epitope-design by mdimmic on 2005-10-04 23:13:27 as
	A novel approach for investigation of specific and cross-reactive IgE epitopes on Bet v 1 and homologous food allergens in individual patients [My Copy] Molecular Immunology, Vol. 43, No. 3. (February 2006), pp. 268-278. by Diana Mittag, Vincent Batori, Philipp Neudecker, et al.Regina Wiche, Esben P. Friis, Barbara K. Ballmer-Weber, Stefan Vieths, Erwin L. Roggen posted to epitope-design by mdimmic on 2005-10-04 22:24:12 as
	Multiple sequence alignments [My Copy] Current Opinion in Structural Biology, Vol. 15, No. 3. (June 2005), pp. 261-266. by Iain M. Wallace, Gordon Blackshields, Desmond G. Higgins posted to review sequence-alignment by mdimmic on 2005-09-30 22:18:25 as along with 5 people Thaverkamp BioNica martainn bpb nklee
	Programmed cell death in the root cortex of soybean root necrosis mutants. [My Copy] Plant J, Vol. 11, No. 4. (April 1997), pp. 729-745. by R. M. Kosslak, M. A. Chamberlin, R. G. Palmer, B. A. Bowen posted to plant-resistance transgenics by mdimmic on 2005-09-27 23:05:09 as
	Predictive estimation of protein linear epitopes by using the program PEOPLE. [My Copy] Vaccine, Vol. 18, No. 3-4. (September 1999), pp. 311-314. by A. J. Alix posted to epitope-design by mdimmic on 2005-08-26 01:17:55 as
	Precise prediction of major histocompatibility complex class II-peptide interaction based on peptide side chain scanning. [My Copy] J Exp Med, Vol. 180, No. 6. (1 December 1994), pp. 2353-2358. by J. Hammer, E. Bono, F. Gallazzi, C. Belunis, Z. Nagy, F. Sinigaglia posted to epitope-design by mdimmic on 2005-08-26 00:17:55 as
	The role of structure in antibody cross-reactivity between peptides and folded proteins. [My Copy] J Mol Biol, Vol. 281, No. 1. (7 August 1998), pp. 183-201. by L. Craig, P. C. Sanschagrin, A. Rozek, S. Lackie, L. A. Kuhn, J. K. Scott posted to epitope-design by mdimmic on 2005-08-25 22:33:00 as
	Predicting location of continuous epitopes in proteins from their primary structures. [My Copy] Methods Enzymol, Vol. 203 (1991), pp. 176-201. by J. L. Pellequer, E. Westhof, M. H. Van Regenmortel posted to epitope-design review by mdimmic on 2005-08-25 22:22:24 as
	Mapping cross-clade HIV-1 vaccine epitopes using a bioinformatics approach. [My Copy] Vaccine, Vol. 21, No. 27-30. (1 October 2003), pp. 4486-4504. by A. S. De Groot, B. Jesdale, W. Martin, et al.C. Saint Aubin, H. Sbai, A. Bosma, J. Lieberman, G. Skowron, F. Mansourati, K. H. Mayer posted to epitope-design by mdimmic on 2005-08-25 21:45:09 as
	Validation of in silico prediction by in vitro immunoserological results of fine epitope mapping on citrate synthase specific autoantibodies. [My Copy] Mol Immunol (5 August 2005) by Z Nyárády, T Czömpöly, Sz Bősze, et al.G Nagy, A Petrohai, J Pál, F Hudecz, T Berki, P Németh posted to epitope-design by mdimmic on 2005-08-25 21:28:15 as
	Candidate epitope identification using peptide property models: application to cancer immunotherapy. [My Copy] Methods, Vol. 34, No. 4. (December 2004), pp. 460-467. by M. H. Sung, R. Simon posted to epitope-design review by mdimmic on 2005-08-25 21:14:44 as along with 1 person and 1 group okarsligil Bioinformatics

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overdispersion	13
homolog-detection	12
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cheminformatics	8
nanodetection	8
phylogenetic-methods	8
protein-engineering	8
microarrays	7
protein-evolution	7
cite	5
models	5
protein-dna-interaction	5
functional-shift	4
lattice-models	4
codon-usage	3
compensatory-changes	3
plant-resistance	3
protein	3
sar	3
sequence-alignment	3
transgenics	3
chemistry-analytical	2
high-throughput-screening	2
hmm	2
ligand-docking	2
nematodes	2
economics	1
evolution	1
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ipam	1
lattice	1
machine-learning	1
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psychology	1
rna	1
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