mdimon's library 234 articles Export

	Slider - Maximum use of probability information for alignment of short sequence reads and SNP detection [My Copy] Bioinformatics, Vol. 25, No. 1. (30 October 2008), pp. btn565-13. by Nawar Malhis, Yaron Butterfield, Martin Ester, Steven J. M. Jones posted to snps solexa by mdimon on 2009-01-30 20:44:10 as along with 8 people darian seb1 torfinnnome orzenil jsatkosk n00c druvus jmeppley
	TileQC: A system for tile-based quality control of Solexa data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 250. by Peter Dolan, Dee Denver posted to solexa by mdimon on 2008-06-02 19:19:49 as along with 7 people heliopais n00c magusina neils reyez slevy03 caseybrown
	Transmission blocking immunity in the malaria non-vector mosquito Anopheles quadriannulatus species A. [My Copy] PLoS pathogens, Vol. 4, No. 5. (May 2008) by T. Habtewold, M. Povelones, A. M. Blagborough, G. K. Christophides posted to falciparum journalclub by mdimon on 2008-06-02 19:18:02 as along with 1 person becarmson
	HDP-a novel heme detoxification protein from the malaria parasite. [My Copy] PLoS pathogens, Vol. 4, No. 4. (4 April 2008) by D. Jani, R. Nagarkatti, W. Beatty, et al.R. Angel, C. Slebodnick, J. Andersen, S. Kumar, D. Rathore posted to falciparum journalclub metabolism by mdimon on 2008-05-01 23:23:52 as
	Epigenetic Silencing of Plasmodium falciparum Genes Linked to Erythrocyte Invasion [My Copy] PLoS Pathogens, Vol. 3, No. 8. (1 August 2007), e107. by Alfred Cortés, Celine Carret, Osamu Kaneko, Yim, Alasdair Ivens, Anthony A. Holder posted to falciparum journalclub var by mdimon on 2008-04-23 23:23:01 as along with 1 person GeeSharpMinor
	A combined transcriptome and proteome survey of malaria parasite liver stages. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 1. (8 January 2008), pp. 305-310. by Alice S. Tarun, Xinxia Peng, Ronald F. Dumpit, et al.Yuko Ogata, Hilda Silva-Rivera, Nelly Camargo, Thomas M. Daly, Lawrence W. Bergman, Stefan H. Kappe posted to falciparum journalclub metabolism by mdimon on 2008-04-23 23:22:44 as along with 5 people tmmurali GeeSharpMinor oelemento renatomilani shuzhens
	Four distinct pathways of hemoglobin uptake in the malaria parasite Plasmodium falciparum. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 7. (19 February 2008), pp. 2463-2468. by D. A. Elliott, M. T. McIntosh, H. D. Hosgood, et al.S. Chen, G. Zhang, P. Baevova, K. A. Joiner posted to falciparum journalclub malaria metabolism by mdimon on 2008-04-23 23:22:23 as
	Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by Ji P. Wang, Bruce Lindsay, Liying Cui, et al.Kerr P. Wall, Josh Marion, Jiaxuan Zhang, Claude Depamphilis posted to sequences by mdimon on 2008-04-02 18:30:04 as
	Using quality scores and longer reads improves accuracy of Solexa read mapping [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (28 February 2008), 128. by Andrew Smith, Zhenyu Xuan, Michael Zhang posted to solexa by mdimon on 2008-03-10 18:54:13 as along with 18 people hzoltan seb1 heliopais bozdagd katholt inesdesantiago n00c maren floatingpoint lukaswindhager natstreet druvus jfr pengchy farhat ghattem kmdaily caseybrown
	High-throughput sequence alignment using Graphics Processing Units [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007), 474. by Michael Schatz, Cole Trapnell, Arthur Delcher, Amitabh Varshney posted to algorithm solexa by mdimon on 2008-02-21 17:28:46 as along with 20 people and 3 groups cthachuk aheilbut druvus polivares naoya n00c natstreet rschulz operon orzenil Yanno guhjy sephy lusk laughcry nedwards cndewey heliopais urgi tpreeprem BergmanLab KCL & UCL Bioinformatics gatech-compgenomics
	Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing [My Copy] Methods In MicroRNAs: Part B, Vol. 44, No. 1. (January 2008), pp. 3-12. by Markus Hafner, Pablo Landgraf, Janos Ludwig, et al.Amanda Rice, Tolulope Ojo, Carolina Lin, Daniel Holoch, Cindy Lim, Thomas Tuschl posted to solexa by mdimon on 2008-02-21 17:21:58 as along with 2 people orzenil guhjy
	SOAP: short oligonucleotide alignment program [My Copy] Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 713-714. by Ruiqiang Li, Yingrui Li, Karsten Kristiansen, Jun Wang posted to algorithm solexa by mdimon on 2008-02-21 17:21:35 as along with 26 people cthachuk hzoltan antonkratz adijr jmanning2k pachorip jmcq jsatkosk jasontsai n00c hpaces skembel maren natstreet druvus orzenil pengchy umit guhjy ghattem GustavoLacerda niallhaslam caseybrown urgi bozdagd waszak
	Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning [My Copy] Nature, Vol. 452, No. 7184. (17 February 2008), pp. 215-219. by Shawn J. Cokus, Suhua Feng, Xiaoyu Zhang, et al.Zugen Chen, Barry Merriman, Christian D. Haudenschild, Sriharsa Pradhan, Stanley F. Nelson, Matteo Pellegrini, Steven E. Jacobsen posted to solexa by mdimon on 2008-02-21 17:20:40 as along with 15 people and 1 group druvus darian iamlily1046 ychang0918 rschulz natstreet iris42 mmartin hkuhn kengg usagi-kirin djkt ghattem epigenetics slonik KCL & UCL Bioinformatics
	Whole-genome sequencing and variant discovery in C. elegans. [My Copy] Nature methods, Vol. 5, No. 2. (20 February 2008), pp. 183-188. by LaDeana W. Hillier, Gabor T. Marth, Aaron R. Quinlan, et al.David Dooling, Ginger Fewell, Derek Barnett, Paul Fox, Jarret I. Glasscock, Matthew Hickenbotham, Weichun Huang, Vincent J. Magrini, Ryan J. Richt, Sacha N. Sander, Donald A. Stewart, Michael Stromberg, Eric F. Tsung, Todd Wylie, Tim Schedl, Richard K. Wilson, Elaine R. Mardis posted to solexa by mdimon on 2008-02-21 17:20:30 as along with 14 people seninp Annab n00c APRegier thegoose2 druvus semrich AaronDarling usagi-kirin matthewsuderman inesdesantiago orzenil farhat tharris
	Different levels of alternative splicing among eukaryotes. [My Copy] Nucleic Acids Res, Vol. 35, No. 1. (2007), pp. 125-131. by E. Kim, A. Magen, G. Ast posted to evolution splicing by mdimon on 2007-11-06 02:01:14 as
	Myc dynamically and preferentially relocates to a transcription factory occupied by Igh. [My Copy] PLoS biology, Vol. 5, No. 8. (August 2007) by Cameron S. Osborne, Lyubomira Chakalova, Jennifer A. Mitchell, et al.Alice Horton, Andrew L. Wood, Daniel J. Bolland, Anne E. Corcoran, Peter Fraser posted to nuclearorganization by mdimon on 2007-10-31 18:38:38 as
	Assessing computational tools for the discovery of transcription factor binding sites [My Copy] Nat Biotech, Vol. 23, No. 1. (06 January 2005), pp. 137-144. by Martin Tompa, Nan Li, Timothy L. Bailey, et al.George M. Church, Bart De Moor, Eleazar Eskin, Alexander V. Favorov, Martin C. Frith, Yutao Fu, W. James Kent, Vsevolod J. Makeev, Andrei A. Mironov, William S. Noble, Giulio Pavesi, Graziano Pesole, Mireille Regnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu posted to computational by mdimon on 2007-10-30 20:25:09 as along with 38 people and 6 groups mpizbioinfo megraw Dulce farhat wowalz mhofree jasontsai heliopais pengchy daforerog yylin cambray emptyhb bryankr icases ana barry aalibes aprasad jfr tuck chad_davis lyongu tabu dquest neveaire ranb johncumbers noano xiaobeizhao olympos GustavoLacerda nklee dandaman vietanh0 ep161302 nuin Stew structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT
	Global protein expression analysis in apicomplexan parasites: current status. [My Copy] Proteomics, Vol. 5, No. 4. (March 2005), pp. 918-924. by S. I. Belli, R. A. Walker, S. A. Flowers posted to falciparum proteomics by mdimon on 2007-10-29 23:32:15 as
	Quantitative proteomics of the human malaria parasite Plasmodium falciparum and its application to studies of development and inhibition. [My Copy] Mol Microbiol, Vol. 52, No. 4. (May 2004), pp. 1187-1199. by N. Nirmalan, P. F. Sims, J. E. Hyde posted to falciparum proteomics by mdimon on 2007-10-29 23:31:23 as
	A proteomic view of the Plasmodium falciparum life cycle. [My Copy] Nature, Vol. 419, No. 6906. (3 October 2002), pp. 520-526. by L. Florens, M. P. Washburn, J. D. Raine, et al.R. M. Anthony, M. Grainger, J. D. Haynes, J. K. Moch, N. Muster, J. B. Sacci, D. L. Tabb, A. A. Witney, D. Wolters, Y. Wu, M. J. Gardner, A. A. Holder, R. E. Sinden, J. R. Yates, D. J. Carucci posted to falciparum proteomics by mdimon on 2007-10-29 23:31:07 as along with 1 person becarmson
	A computational survey of candidate exonic splicing enhancer motifs in the model plant Arabidopsis thaliana [My Copy] BMC Bioinformatics, Vol. 8 (21 May 2007), 159. by Mihaela Pertea, Stephen M. Mount, Steven L. Salzberg posted to splicing by mdimon on 2007-10-29 18:48:37 as
	Discovery and Analysis of Evolutionarily Conserved Intronic Splicing Regulatory Elements [My Copy] PLoS Genetics, Vol. 3, No. 5. (1 May 2007), e85. by Gene W. Yeo, Eric L. Nostrand, Tiffany Y. Liang posted to splicing by mdimon on 2007-10-29 18:48:03 as along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
	Identification of Common Genetic Variation That Modulates Alternative Splicing. [My Copy] PLoS Genet, Vol. 3, No. 6. (15 June 2007) by Jeremy Hull, Susana Campino, Kate Rowlands, et al.Man-Suen S. Chan, Richard R R. Copley, Martin S S. Taylor, Kirk Rockett, Gareth Elvidge, Brendan Keating, Julian Knight, Dominic Kwiatkowski posted to splicing by mdimon on 2007-10-29 18:45:41 as along with 3 people jfr qfwills guhjy
	Control of pre-mRNA splicing by the general splicing factors PUF60 and U2AF65. [My Copy] PLoS ONE, Vol. 2, No. 6. (2007) by M. L. Hastings, E. Allemand, D. M. Duelli, M. P. Myers, A. R. Krainer posted to splicing by mdimon on 2007-10-29 18:45:08 as
	A procedure for the identification of homologous alternative splicing events [My Copy] BMC Bioinformatics, Vol. 8 (19 July 2007), 260. by David Talavera, Adam Hospital, Modesto Orozco, Xavier posted to spli by mdimon on 2007-10-29 18:43:45 as
	Finding signals that regulate alternative splicing in the post-genomic era. [My Copy] Genome Biol, Vol. 3, No. 11. (23 October 2002) by A. N. Ladd, T. A. Cooper posted to splicing by mdimon on 2007-10-29 18:42:11 as along with 3 people brl Cortel dalloliogm
	Analysis of alternative splicing with microarrays: successes and challenges. [My Copy] Genome Biol, Vol. 5, No. 7. (2004) by C. Lee, M. Roy posted to splicing by mdimon on 2007-10-29 18:42:01 as along with 2 people jfr mirzazadeh
	Splicing regulators: targets and drugs. [My Copy] Genome Biol, Vol. 6, No. 12. (2005) by G. W. Yeo posted to splicing by mdimon on 2007-10-29 18:41:48 as
	Alternative splicing--when two's a crowd. [My Copy] Cell, Vol. 123, No. 1. (7 October 2005), pp. 1-3. by C. W. Smith posted to splicing by mdimon on 2007-10-29 18:41:36 as along with 2 people and 1 group Cortel kaspermunch Bioinformatics
	Identification of nuclear proteins that interact differentially with Plasmodium falciparum var gene promoters. [My Copy] Mol Microbiol, Vol. 48, No. 6. (June 2003), pp. 1593-1607. by T. S. Voss, M. Kaestli, D. Vogel, S. Bopp, H. P. Beck posted to falciparum regulation var by mdimon on 2007-10-29 18:41:02 as
	Genome-wide identification of spliced introns using a tiling microarray [My Copy] Genome Res., Vol. 17, No. 4. (1 April 2007), pp. 503-509. by Zhihong Zhang, Jay R. Hesselberth, Stanley Fields posted to genome splicing by mdimon on 2007-10-26 21:16:03 as along with 1 person stajich
	Applications of DNA tiling arrays for whole-genome analysis. [My Copy] Genomics, Vol. 85, No. 1. (January 2005), pp. 1-15. by T. C. Mockler, S. Chan, A. Sundaresan, H. Chen, S. E. Jacobsen, J. R. Ecker posted to genome splicing by mdimon on 2007-10-26 21:15:43 as along with 6 people and 1 group JohnBallam lptolik jwestbrook blackm0k jo_davies bozdagd King_Lab
	Sex, AGility, and the regulation of alternative splicing. [My Copy] Cell, Vol. 109, No. 4. (17 May 2002), pp. 409-412. by B. R. Graveley posted to splicing by mdimon on 2007-10-24 21:24:27 as
	Plasmodium falciparum variant surface antigen expression patterns during malaria. [My Copy] PLoS Pathog, Vol. 1, No. 3. (November 2005) by P. C. Bull, M. Berriman, S. Kyes, et al.M. A. Quail, N. Hall, M. M. Kortok, K. Marsh, C. I. Newbold posted to falciparum model switchingrate var by mdimon on 2007-10-17 01:08:15 as along with 2 people taylo115 GeeSharpMinor
	Differential changes in Plasmodium falciparum var transcription during adaptation to culture. [My Copy] J Infect Dis, Vol. 195, No. 5. (1 March 2007), pp. 748-755. by J. M. Peters, E. V. Fowler, D. R. Krause, Q. Cheng, M. L. Gatton posted to falciparum var by mdimon on 2007-10-17 01:05:40 as along with 1 person GeeSharpMinor
	High diversity and rapid changeover of expressed var genes during the acute phase of Plasmodium falciparum infections in human volunteers. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 16. (6 August 2002), pp. 10689-10694. by J. Peters, E. Fowler, M. Gatton, N. Chen, A. Saul, Q. Cheng posted to falciparum model switchingrate var by mdimon on 2007-10-17 01:02:17 as
	An integrated model of Plasmodium falciparum dynamics. [My Copy] J Theor Biol, Vol. 232, No. 3. (7 February 2005), pp. 411-426. by F. E. McKenzie, W. H. Bossert posted to falciparum model switchingrate var by mdimon on 2007-10-17 00:57:56 as along with 1 person GeeSharpMinor
	Modeling the development of acquired clinical immunity to Plasmodium falciparum malaria. [My Copy] Infect Immun, Vol. 72, No. 11. (November 2004), pp. 6538-6545. by M. L. Gatton, Q. Cheng posted to falciparum model switchingrate var by mdimon on 2007-10-17 00:57:14 as
	Investigating antigenic variation and other parasite-host interactions in Plasmodium falciparum infections in naïve hosts. [My Copy] Parasitology, Vol. 128, No. Pt 4. (April 2004), pp. 367-376. by M. L. Gatton, Q. Cheng posted to falciparum model switchingrate var by mdimon on 2007-10-17 00:56:43 as
	The Plasmodium falciparum var gene switching rate, switching mechanism and patterns of parasite recrudescence described by mathematical modelling. [My Copy] Parasitology, Vol. 124, No. Pt 3. (March 2002), pp. 225-235. by S. Paget-McNicol, M. Gatton, I. Hastings, A. Saul posted to falciparum model switchingrate var by mdimon on 2007-10-17 00:52:15 as
	Structural RNAs of known and unknown function identified in malaria parasites by comparative genomics and RNA analysis. [My Copy] RNA (New York, N.Y.), Vol. 13, No. 11. (27 November 2007), pp. 1923-1939. by Kausik Chakrabarti, Michael Pearson, Leslie Grate, et al.Timothy Sterne-Weiler, Jonathan Deans, John Paul P. Donohue, Manuel Ares posted to falciparum prediction by mdimon on 2007-10-16 22:53:30 as along with 2 people GeeSharpMinor becarmson
	A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses. [My Copy] Science, Vol. 307, No. 5706. (7 January 2005), pp. 82-86. by N. Hall, M. Karras, J. D. Raine, et al.J. M. Carlton, T. W. Kooij, M. Berriman, L. Florens, C. S. Janssen, A. Pain, G. K. Christophides, K. James, K. Rutherford, B. Harris, D. Harris, C. Churcher, M. A. Quail, D. Ormond, J. Doggett, H. E. Trueman, J. Mendoza, S. L. Bidwell, M. A. Rajandream, D. J. Carucci, J. R. Yates, F. C. Kafatos, C. J. Janse, B. Barrell, C. M. Turner, A. P. Waters, R. E. Sinden posted to comparative plasmodium by mdimon on 2007-10-15 22:30:50 as along with 5 people shung maxell Sharpshoot becarmson alexl
	Finding genes in Plasmodium falciparum. [My Copy] Nature, Vol. 404, No. 6773. (2 March 2000) by M. Pertea, S. L. Salzberg, M. J. Gardner posted to computational falciparum genefinding by mdimon on 2007-10-15 21:25:45 as along with 1 person shung
	Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements. [My Copy] Genome research, Vol. 16, No. 10. (October 2006), pp. 1299-1309. by Josée Dostie, Todd A. Richmond, Ramy A. Arnaout, et al.Rebecca R. Selzer, William L. Lee, Tracey A. Honan, Eric D. Rubio, Anton Krumm, Justin Lamb, Chad Nusbaum, Roland D. Green, Job Dekker posted to 3c nuclearorganization by mdimon on 2007-10-11 20:45:55 as along with 5 people TorstenWaldminghaus idonaldson polivares WanderingAengus elzodw
	Evolutionary origin of Plasmodium and other Apicomplexa based on rRNA genes. [My Copy] Proc Natl Acad Sci U S A, Vol. 92, No. 13. (20 June 1995), pp. 5793-5797. by A. A. Escalante, F. J. Ayala posted to evolution falciparum phylogeny by mdimon on 2007-10-10 21:40:50 as
	Astrocytes modulate macrophage phagocytosis of myelin in vitro. [My Copy] J Neuroimmunol, Vol. 102, No. 2. (24 January 2000), pp. 154-162. by M. E. Smith, M. T. Hoerner posted to no-tag by mdimon on 2007-10-03 20:07:55 as
	The Plasmodium vivax genome sequencing project. [My Copy] Trends Parasitol, Vol. 19, No. 5. (May 2003), pp. 227-231. by J. Carlton posted to genome vivax by mdimon on 2007-10-02 01:11:10 as
	The genome of model malaria parasites, and comparative genomics. [My Copy] Curr Issues Mol Biol, Vol. 7, No. 1. (January 2005), pp. 23-37. by J. Carlton, J. Silva, N. Hall posted to falciparum genome by mdimon on 2007-10-02 01:10:52 as
	Profiling the malaria genome: a gene survey of three species of malaria parasite with comparison to other apicomplexan species. [My Copy] Mol Biochem Parasitol, Vol. 118, No. 2. (December 2001), pp. 201-210. by J. M. Carlton, R. Muller, C. A. Yowell, et al.M. R. Fluegge, K. A. Sturrock, J. R. Pritt, E. Vargas-Serrato, M. R. Galinski, J. W. Barnwell, N. Mulder, A. Kanapin, S. E. Cawley, W. A. Hide, J. B. Dame posted to falciparum genome by mdimon on 2007-10-02 01:10:22 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	SLAM: Cross-Species Gene Finding and Alignment with a Generalized Pair Hidden Markov Model [My Copy] Genome Research, Vol. 13, No. 3. (1 March 2003), pp. 496-502. by Marina Alexandersson, Simon Cawley, Lior Pachter posted to falciparum genome prediction by mdimon on 2007-10-02 01:09:02 as along with 3 people and 1 group stharward Ayest azazello MBLAB

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bibtex-import	131
falciparum	62
var	61
splicing	23
genome	12
regulation	10
3c	9
journalclub	8
nuclearorganization	8
solexa	8
stevor	8
switchingrate	8
review	7
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plasmodium	6
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evolution	5
prediction	5
comparative	4
maurerscleft	4
pir	4
sequences	4
trafficking	4
yeast	4
derisi	3
drugresistance	3
drugtargets	3
e-map	3
malaria	3
metabolism	3
network	3
proteomics	3
rif	3
systemsbio	3
vaccine	3
algorithm	2
computational	2
economics	2
human	2
interactions	2
labmeeting	2
methods	2
oceansampling	2
pcr	2
population	2
target	2
transenhancer	2
trypanosomes	2
alignmentmatrix	1
cerebral	1
domains	1
genefinding	1
history	1
immunology	1
intron	1
invasion	1
metagenomics	1
microolap	1
mitocondria	1
ordering	1
originalimport	1
pam	1
pathogens	1
phylogeny	1
rifin	1
snps	1
southern	1
spli	1
vivax	1

mdimon's library 234 articles Export

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