meanerelk's library 84 articles Export

	cHawk: An Efficient Biclustering Algorithm based on Bipartite Graph Crossing Minimization [My Copy] by Waseem Ahmad posted to biclustering by meanerelk on 2009-11-23 20:04:15 as
	Efficient Biclustering Algorithms for Time Series Gene Expression Data Analysis [My Copy] Distributed Computing, Artificial Intelligence, Bioinformatics, Soft Computing, and Ambient Assisted Living (2009), pp. 1013-1019. by Sara Madeira, Arlindo Oliveira posted to biclustering by meanerelk on 2009-11-13 17:24:57 as
	Identification of Regulatory Modules in Time Series Gene Expression Data Using a Linear Time Biclustering Algorithm [My Copy] Computational Biology and Bioinformatics, IEEE/ACM Transactions on, Vol. PP, No. 99. (31 March 2008), pp. 1-1. by S. Madeira, M. Teixeira, I. Sa-Correia, A. Oliveira posted to biclustering by meanerelk on 2009-11-13 17:24:35 as
	Rich probabilistic models for gene expression [My Copy] Bioinformatics, Vol. 17, No. suppl_1. (1 June 2001), pp. S243-252. by Eran Segal, Ben Taskar, Audrey Gasch, Nir Friedman, Daphne Koller posted to gene_expression_data clustering by meanerelk on 2009-11-13 04:47:52 as along with 4 people and 1 group lfriedl balicea wnpx frohike kdl
	Mining co-regulated gene profiles for the detection of functional associations in gene expression data [My Copy] Bioinformatics, Vol. 23, No. 15. (1 August 2007), pp. 1927-1935. by Attila Gyenesei, Ulrich Wagner, Simon Barkow-Oesterreicher, Etzard Stolte, Ralph Schlapbach posted to gene_expression_data clustering by meanerelk on 2009-11-13 04:47:21 as along with 4 people shigepong isimpson ptrobajo renatomilani
	MUSA: a parameter free algorithm for the identification of biologically significant motifs [My Copy] Bioinformatics, Vol. 22, No. 24. (15 December 2006), pp. 2996-3002. by Nuno D. Mendes, Ana C. Casimiro, Pedro M. Santos, Isabel Sa-Correia, Arlindo L. Oliveira, Ana T. Freitas posted to biclustering by meanerelk on 2009-11-13 04:16:25 as along with 2 people Dulce wowalz
	Identifying time-lagged gene clusters using gene expression data [My Copy] Bioinformatics, Vol. 21, No. 4. (15 February 2005), pp. 509-516. by Liping Ji, Kian-Lee Tan posted to biclustering by meanerelk on 2009-11-13 04:16:20 as
	Query-driven module discovery in microarray data [My Copy] Bioinformatics, Vol. 23, No. 19. (1 October 2007), pp. 2573-2580. by Thomas Dhollander, Qizheng Sheng, Karen Lemmens, Bart De Moor, Kathleen Marchal, Yves Moreau posted to biclustering by meanerelk on 2009-11-13 04:16:16 as along with 4 people ptrobajo guhjy tmmurali tvdbulck
	Biclustering microarray data by Gibbs sampling [My Copy] Bioinformatics, Vol. 19, No. suppl_2. (27 September 2003), pp. ii196-205. by Qizheng Sheng, Yves Moreau, Bart De Moor posted to biclustering by meanerelk on 2009-11-13 04:16:11 as along with 4 people marti akastrin surajitray tvdbulck
	A new strategy of cooperativity of biclustering and hierarchical clustering: a case of analyzing yeast genomic microarray datasets. [My Copy] Frontiers in bioscience : a journal and virtual library, Vol. 10 (2005), pp. 1619-1627. by Daqing Mao, Yi Luo, Jinghai Zhang, Jun Zhu posted to biclustering by meanerelk on 2009-11-13 04:14:20 as
	Functional grouping of yeast genes via biclustering microarray data. [My Copy] Frontiers in bioscience : a journal and virtual library, Vol. 10 (2005), pp. 2669-2675. by Daqing Mao, Yi Luo, Maosheng Cheng, Jinghai Zhang posted to biclustering by meanerelk on 2009-11-13 04:14:17 as
	Multi-metric and multi-substructure biclustering analysis for gene expression data. [My Copy] Proceedings / IEEE Computational Systems Bioinformatics Conference, CSB. IEEE Computational Systems Bioinformatics Conference (2005), pp. 123-134. by S. Y. Kung, Man-Wai W. Mak, Ilias Tagkopoulos posted to biclustering by meanerelk on 2009-11-13 04:14:07 as
	Gene Ontology friendly biclustering of expression profiles. [My Copy] Proceedings / IEEE Computational Systems Bioinformatics Conference, CSB. IEEE Computational Systems Bioinformatics Conference (2004), pp. 436-447. by Jinze Liu, Wei Wang, Jiong Yang posted to biclustering by meanerelk on 2009-11-13 04:14:04 as
	Automatic layout and visualization of biclusters. [My Copy] Algorithms for molecular biology : AMB, Vol. 1 (04 September 2006), 15. by Gregory A. Grothaus, Adeel Mufti, T. M. Murali posted to biclustering by meanerelk on 2009-11-13 04:14:00 as along with 1 person karfunkel
	GEMS: a web server for biclustering analysis of expression data. [My Copy] Nucleic acids research, Vol. 33, No. Web Server issue. (1 July 2005) by Chang-Jiun J. Wu, Simon Kasif posted to biclustering by meanerelk on 2009-11-13 04:13:33 as along with 2 people dps tvdbulck
	Extending bicluster analysis to annotate unclassified ORFs and predict novel functional modules using expression data. [My Copy] BMC genomics, Vol. 9 Suppl 2 (2008) by Kenneth Bryan, Pádraig Cunningham posted to biclustering by meanerelk on 2009-11-13 04:12:58 as along with 1 person jfr
	An efficient voting algorithm for finding additive biclusters with random background. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 15, No. 10. (December 2008), pp. 1275-1293. by Jing Xiao, Lusheng Wang, Xiaowen Liu, Tao Jiang posted to biclustering by meanerelk on 2009-11-13 04:11:43 as
	Biclustering sparse binary genomic data. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 15, No. 10. (December 2008), pp. 1329-1345. by Miranda van Uitert, Wouter Meuleman, Lodewyk Wessels posted to biclustering by meanerelk on 2009-11-13 04:11:40 as along with 2 people jfr ilyashl
	Finding multiple coherent biclusters in microarray data using variable string length multiobjective genetic algorithm. [My Copy] IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society, Vol. 13, No. 6. (November 2009), pp. 969-975. by Ujjwal Maulik, Anirban Mukhopadhyay, Sanghamitra Bandyopadhyay posted to biclustering by meanerelk on 2009-11-13 04:11:35 as
	A novel coherence measure for discovering scaling biclusters from gene expression data. [My Copy] Journal of bioinformatics and computational biology, Vol. 7, No. 5. (October 2009), pp. 853-868. by Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay posted to biclustering by meanerelk on 2009-11-13 04:11:27 as
	EDISA: extracting biclusters from multiple time-series of gene expression profiles. [My Copy] BMC bioinformatics, Vol. 8 (12 September 2007), 334. by Jochen Supper, Martin Strauch, Dierk Wanke, Klaus Harter, Andreas Zell posted to biclustering by meanerelk on 2009-11-13 04:09:28 as along with 3 people guhjy bertelsen dps
	Biclustering in gene expression data by tendency. [My Copy] Proceedings / IEEE Computational Systems Bioinformatics Conference, CSB. IEEE Computational Systems Bioinformatics Conference (2004), pp. 182-193. by Jinze Liu, Jiong Wang, Wei Wang posted to biclustering by meanerelk on 2009-11-13 04:09:24 as
	Shifting and scaling patterns from gene expression data [My Copy] Bioinformatics, Vol. 21, No. 20. (15 October 2005), pp. 3840-3845. by Jesus S. Aguilar-Ruiz posted to biclustering by meanerelk on 2009-11-13 04:09:14 as along with 2 people irinamohorianu ihpark
	A new geometric biclustering algorithm based on the Hough transform for analysis of large-scale microarray data. [My Copy] Journal of theoretical biology, Vol. 251, No. 2. (21 March 2008), pp. 264-274. by Hongya Zhao, Alan Wee-Chung W. Liew, Xudong Xie, Hong Yan posted to biclustering by meanerelk on 2009-11-13 04:09:03 as along with 2 people jfr dps
	Discovering coherent biclusters from gene expression data using zero-suppressed binary decision diagrams. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM, Vol. 2, No. 4. (c 2005), pp. 339-354. by Sungroh Yoon, Christine Nardini, Luca Benini, Giovanni De Micheli posted to biclustering by meanerelk on 2009-11-13 04:08:56 as along with 1 person dps
	Evaluation and optimization of clustering in gene expression data analysis. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 10. (10 July 2004), pp. 1535-1545. by A. Fazel Famili, Ganming Liu, Ziying Liu posted to biclustering by meanerelk on 2009-11-13 04:08:37 as along with 3 people paszkows jfr dps
	Gene expression data analysis using a novel approach to biclustering combining discrete and continuous data. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM In Computational Biology and Bioinformatics, IEEE/ACM Transactions on, Vol. 5, No. 4. (c 2008), pp. 583-593. by Yann Christinat, Bernd Wachmann, Lei Zhang posted to biclustering by meanerelk on 2009-11-13 04:08:28 as along with 1 person AbnerCYH
	Biclustering algorithms for biological data analysis: a survey. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM In IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 1, No. 1. (r 2004), pp. 24-45. by Sara C. Madeira, Arlindo L. Oliveira posted to biclustering by meanerelk on 2009-11-13 04:08:05 as along with 15 people marti socwangnan jurgenjanes zufar ilyashl saman_vp ihpark tvdbulck librain dps bozdagd ealloza carlk chrisamiller tmmurali
	CLICK and EXPANDER: a system for clustering and visualizing gene expression data. [My Copy] Bioinformatics, Vol. 19, No. 14. (22 September 2003), pp. 1787-1799. by Roded Sharan, Adi Maron-Katz, Ron Shamir posted to biclustering by meanerelk on 2009-11-13 04:08:00 as along with 3 people ujh maralena minostro
	Biclustering of microarray data with MOSPO based on crowding distance. [My Copy] BMC bioinformatics, Vol. 10 Suppl 4, No. Suppl 4. (2009), S9. by Junwan Liu, Zhoujun Li, Xiaohua Hu, Yiming Chen posted to biclustering by meanerelk on 2009-11-13 04:07:56 as
	Application of simulated annealing to the biclustering of gene expression data. [My Copy] IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society, Vol. 10, No. 3. (July 2006), pp. 519-525. by Kenneth Bryan, Pádraig Cunningham, Nadia Bolshakova posted to biclustering by meanerelk on 2009-11-13 04:07:49 as along with 1 person dragonrez
	Possibilistic approach for biclustering microarray data. [My Copy] Computers in biology and medicine In QT Variability & Heart Rate Variability, Vol. 37, No. 10. (October 2007), pp. 1426-1436. by C. Cano, L. Adarve, J. López, A. Blanco posted to biclustering by meanerelk on 2009-11-13 04:07:43 as along with 1 person dps
	Biological evaluation of biclustering algorithms using Gene Ontology and chIP-chip data [My Copy] Acoustics, Speech and Signal Processing, 2008. ICASSP 2008. IEEE International Conference on (12 May 2008), pp. 637-640. by A. B. Tchagang, A. H. Tewflk, P. V. Benos posted to biclustering by meanerelk on 2009-11-13 04:07:29 as
	A general framework for biclustering gene expression data. [My Copy] Journal of bioinformatics and computational biology, Vol. 4, No. 4. (August 2006), pp. 911-933. by Haifeng Li, Xin Chen, Keshu Zhang, Tao Jiang posted to biclustering by meanerelk on 2009-11-13 04:05:04 as along with 2 people dps dragonrez
	Identification of coherent patterns in gene expression data using an efficient biclustering algorithm and parallel coordinate visualization. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (23 April 2008), 210. by Kin-On O. Cheng, Ngai-Fong F. Law, Wan-Chi C. Siu, Alan Wee-Chung W. Liew posted to biclustering by meanerelk on 2009-11-13 04:04:44 as along with 1 person dragonrez
	Discovering biclusters in gene expression data based on high-dimensional linear geometries. [My Copy] BMC bioinformatics, Vol. 9 (23 April 2008), 209. by Xiangchao Gan, Alan Wee-Chung W. Liew, Hong Yan posted to biclustering by meanerelk on 2009-11-13 04:04:29 as
	Biclustering of expression data. [My Copy] Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology, Vol. 8 (2000), pp. 93-103. by Y. Cheng, G. M. Church posted to gene_expression_data biclustering by meanerelk on 2009-11-13 04:03:32 as along with 6 people marti parnell ihpark wnpx tvdbulck dragonrez
	Discovering statistically significant biclusters in gene expression data. [My Copy] Bioinformatics (Oxford, England), Vol. 18 Suppl 1 (2002) by Amos Tanay, Roded Sharan, Ron Shamir posted to gene_expression_data biclustering by meanerelk on 2009-11-13 04:03:08 as along with 12 people and 2 groups marti tonamswish ihpark ggrot okarsligil lfriedl incovoma dps dragonrez tvdbulck carlk librain kdl Bioinformatics
	An improved biclustering algorithm and its application to gene expression spectrum analysis. [My Copy] Genomics, proteomics & bioinformatics / Beijing Genomics Institute, Vol. 3, No. 3. (August 2005), pp. 189-193. by Hua Qu, Liu Pu P. Wang, Yan Chun C. Liang, Chun Guo G. Wu posted to gene_expression_data biclustering by meanerelk on 2009-11-13 04:02:28 as
	BiVisu: software tool for bicluster detection and visualization. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 17. (1 September 2007), pp. 2342-2344. by K. O. Cheng, N. F. Law, W. C. Siu, T. H. Lau posted to biclustering by meanerelk on 2009-11-13 04:00:52 as along with 3 people marti sebastien_vigneau rdiaz
	Bayesian biclustering of gene expression data. [My Copy] BMC genomics, Vol. 9 Suppl 1, No. Suppl 1. (2008), S4. by Jiajun Gu, Jun S. Liu posted to gene_expression_data biclustering by meanerelk on 2009-11-13 03:58:40 as along with 9 people dolchan marti tonamswish bertelsen imina tvdbulck jfr yangc dragonrez
	Multi-objective Particle Swarm Optimization Biclustering of Microarray Data [My Copy] Bioinformatics and Biomedicine, IEEE International Conference on, Vol. 0 (2008), pp. 363-366. by Junwan Liu, Zhoujun Li, Feifei Liu, Yiming Chen posted to swarm biclustering by meanerelk on 2009-11-13 03:53:28 as
	ParTriCluster: A Scalable Parallel Algorithm for Gene Expression Analysis [My Copy] Computer Architecture and High Performance Computing, 2006. SBAC-PAD '06. 18TH International Symposium on (19 December 2006), pp. 3-10. by Renata Araujo, Guilherme Trielli, Gustavo Orair, Wagner Meira, Renato Ferreira, Dorgival Guedes posted to parallel expression_levels biclustering by meanerelk on 2009-11-13 03:52:48 as
	Biclustering of gene expression data using reactive greedy randomized adaptive search procedure. [My Copy] BMC bioinformatics, Vol. 10 Suppl 1, No. Suppl 1. (2009), S27. by Smitha Dharan, Achuthsankar S. Nair posted to microarray clustering_algorithms biclustering by meanerelk on 2009-11-13 03:50:49 as
	High Performance Parallel/Distributed Biclustering Using Barycenter Heuristic. [My Copy] by Arifa Nisar, Waseem Ahmad, Wei-keng Liao, Alok Choudhary posted to high_performance biclustering by meanerelk on 2009-11-13 03:49:07 as
	A Time-Series Biclustering Algorithm for Revealing Co-Regulated Genes [My Copy] Information Technology: Coding and Computing, International Conference on In ITCC '05: Proceedings of the International Conference on Information Technology: Coding and Computing (ITCC'05) - Volume I, Vol. 1 (2005), pp. 32-37. by Ya Zhang, Hongyuan Zha, Chao H. Chu posted to time_series biclustering by meanerelk on 2009-11-13 03:40:33 as
	Local coherence in genetic interaction patterns reveals prevalent functional versatility [My Copy] Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2376-2383. by Shuye Pu, Karen Ronen, James Vlasblom, Jack Greenblatt, Shoshana J. Wodak posted to coherence_detection biclustering by meanerelk on 2009-11-13 03:38:23 as along with 1 person colmryan
	A novel non-overlapping bi-clustering algorithm for network generation using living cell array data [My Copy] Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2306-2313. by E. Yang, P. T. Foteinou, K. R. King, M. L. Yarmush, I. P. Androulakis posted to network_structures expression_levels biclustering by meanerelk on 2009-11-13 03:37:04 as along with 2 people rdiaz shigepong
	Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (02 June 2006), 280. by David Reiss, Nitin Baliga, Richard Bonneau posted to sequence_motifs clustering_algorithm biclustering by meanerelk on 2009-11-13 03:26:36 as along with 6 people parnell bozdagd surajitray tvdbulck frohike tmmurali
	Microarray Analysis and Motif Detection Reveal New Targets of the Salmonella enterica Serovar Typhimurium HilA Regulatory Protein, Including hilA Itself [My Copy] J. Bacteriol., Vol. 187, No. 13. (1 July 2005), pp. 4381-4391. by Sigrid C. J. De Keersmaecker, Kathleen Marchal, Tine L. A. Verhoeven, Kristof Engelen, Jos Vanderleyden, Corrella S. Detweiler posted to target_genes regulatory_motifs microarray_data gene_expression by meanerelk on 2009-11-13 03:24:38 as

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biclustering	60
microarray_data	10
gene_networks	8
gene_expression_data	7
silico	4
opsm	3
simulation	3
bayesian_networks	2
biological_networks	2
clustering	2
expression_levels	2
genetic_regulatory_networks	2
network_structures	2
bioconductor	1
clustering_algorithm	1
clustering_algorithms	1
coherence_detection	1
correlation	1
data_mining	1
drosophila_melanogaster	1
evolution_simulation	1
gene_expression	1
gene_network	1
gene_regulatory_networks	1
genetic_algorithm	1
genetic_networks	1
hierarchical_clustering	1
high_performance	1
microarray	1
network_simulation	1
normalization_method	1
parallel	1
plasticity	1
regulatory_motifs	1
regulatory_networks	1
saccharomyces_cerevisiae	1
sequence_motifs	1
simulation_algorithm	1
statistics	1
stochastic_simulation	1
swarm	1
target_genes	1
time_series	1
trends	1
yeast	1

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