michaelbarton's library 277 articles Export

	Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima [My Copy] Science, Vol. 325, No. 5947. (18 September 2009), pp. 1544-1549. by Ying Zhang, Ines Thiele, Dana Weekes, et al.Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley M. Deacon, John Wooley, Scott A. Lesley, Ian A. Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik posted to no-tag by michaelbarton on 2009-11-10 10:53:06 as along with 13 people venancio schwartzjmc apocapoc eehsanipour riffraff reyez TRHvidsten flbarroso daveGerrard zwang pablocarb phoenixzxl roys
	Viral adaptation to host: a proteome-based analysis of codon usage and amino acid preferences [My Copy] Molecular Systems Biology, Vol. 5 (13 October 2009) by Iris Bahir, Menachem Fromer, Yosef Prat, Michal Linial posted to virus amino-acid-usage by michaelbarton on 2009-11-06 17:01:12 as along with 1 person phoenixzxl
	Computational methods for discovering structural variation with next-generation sequencing [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S13-S20. by Paul Medvedev, Monica Stanciu, Michael Brudno posted to srs-resequencing srs-assembly srs by michaelbarton on 2009-11-06 17:00:32 as along with 16 people and 2 groups pst owenlancaster robertrentzsch oannes74 toszko kiekyon jasontsai sameersoi heliopais druvus GeeSharpMinor Peiyong n00c gdv desany qayub Orengo Group Journal Picks Journal picks
	Explaining microbial population genomics through phage predation [My Copy] Nature Reviews Microbiology, Vol. 7, No. 11. (01 November 2009), pp. 828-836. by Francisco Rodriguez-Valera, Ana-Belen Martin-Cuadrado, Beltran Rodriguez-Brito, et al.Lejla Pasic, T. Frede Thingstad, Forest Rohwer, Alex Mira posted to srs-resequencing population-genetics by michaelbarton on 2009-11-06 16:59:46 as along with 3 people Katje kinestetika maren
	Inferring branching pathways in genome-scale metabolic networks [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 103. by Esa Pitkanen, Paula Jouhten, Juho Rousu posted to genome-scale-model by michaelbarton on 2009-11-06 16:57:44 as
	Shifts in growth strategies reflect tradeoffs in cellular economics. [My Copy] Molecular systems biology, Vol. 5 (03 November 2009) by Douwe Molenaar, Rogier van Berlo, Dick de Ridder, Bas Teusink posted to metabolism metabolic_efficiency cost-minimisation by michaelbarton on 2009-11-06 16:56:50 as along with 1 person karthikraman
	Applications of genome-scale metabolic reconstructions [My Copy] Molecular Systems Biology, Vol. 5 (03 November 2009) by Matthew A. Oberhardt, Bernhard O. Palsson, Jason A. Papin posted to genome-scale-model by michaelbarton on 2009-11-06 16:55:47 as along with 3 people pjmaybank arne pablocarb
	Genome evolution and adaptation in a long-term experiment with Escherichia coli. [My Copy] Nature, Vol. 461, No. 7268. (29 October 2009), pp. 1243-1247. by Jeffrey E. Barrick, Dong Su S. Yu, Sung Ho H. Yoon, et al.Haeyoung Jeong, Tae Kwang K. Oh, Dominique Schneider, Richard E. Lenski, Jihyun F. Kim posted to srs-resequencing evolutionary-rate ecoli by michaelbarton on 2009-10-19 16:52:32 as along with 31 people and 5 groups pmalkus dokky samubernard ilyashl biomcgary kintoki zwang jasontsai aaltenburger sawasthi nurban josepe tjandra venancio maren qayub Garamonfok yyfwuhan Asclepius dbikard nzm jjray djkt treangen lp2 codonusage operon diamantis druvus DrRichardBadge richardfranzese ronbun_2009au Pedro Martinez EvoDevo lab Barcelona iSEEM Journal picks BergmanLab
	How To Choose a Good Scientific Problem [My Copy] Molecular Cell, Vol. 35, No. 6. (24 September 2009), pp. 726-728. by Uri Alon posted to research by michaelbarton on 2009-10-13 13:54:26 as along with 123 people and 6 groups cefa gvdh penneyft welliegirl bertelsen thegoose xawen chriswillmott nellapower ishiken andreff claudiushauptmann cermak bmoores karthikraman applebyb mordiano Gorzomagnificent Horduna ajaymalik mmwoodman dbikard toszko mthomure timflutre cyounkin marsl0am jmzhuo dmorti renatomilani ibre kevinemamy Sergey_gerbek huberse ddbb12 seneca mattbiehl mmborges GeeSharpMinor jjjpppfff zhangfh andreacapocci melo_mcr aaltenburger iannis jichok josephjose TorstenWaldminghaus kshameer rudalert kvalyi duel_jetty allaves rabit fercosber hax123 iskanbasal livingthingdan poojamaj gonzalez amynmoore ramalldf pvdg sfalsharif dill2009 singhsh rogermug aha jarekadam Jansen04 cgravlee lkakinami anuragsethi flips robfree kaliczp yyfwuhan luciensamary elsantosneto mgaldino daveGerrard sandfire tnhh lesandrop munzmarci pdpcosta mxro wangngu myriasofo OliverHarriman AnthonySoprano robertlischke R_C_Cordeiro daforerog operon nandipati wenhaosparty jeffcrow leocmcheung fgibson snakehsu cisevol dna dullhunk danilov m_lew abellogin cxshang grahamc SantoshKalwar Xusheng leonardo roys benoitvalley zchen75 darshan druvus Asclepius Zephyrus songpku aalibes flieder pedromts Brain-like research group UWA Science Communication milab@yzu Information Integration Architecture BergmanLab Roswell Cancer Crosstalk
	Reactome array: forging a link between metabolome and genome. [My Copy] Science (New York, N.Y.), Vol. 326, No. 5950. (9 October 2009), pp. 252-257. by Ana Beloqui, María-Eugenia E. Guazzaroni, Florencio Pazos, et al.José M. Vieites, Marta Godoy, Olga V. Golyshina, Tatyana N. Chernikova, Agnes Waliczek, Rafael Silva-Rocha, Yamal Al-Ramahi, Violetta La Cono, Carmen Mendez, José A. Salas, Roberto Solano, Michail M. Yakimov, Kenneth N. Timmis, Peter N. Golyshin, Manuel Ferrer posted to no-tag by michaelbarton on 2009-10-09 15:53:18 as along with 8 people and 1 group kinestetika renatomilani leliavski brianb abhishek_tiwari TRHvidsten ptrobajo gbloeb Shared Literature Resource of the Microbial Fitness Group - MPI Bremen
	http://www.mcisb.org/ [My Copy] by The Manchester Centre For Integrative Systems Biology posted to mdb-manuscript-1 by michaelbarton on 2009-10-06 14:42:16 as
	Conservation of the metabolomic response to starvation across two divergent microbes. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 51. (19 December 2006), pp. 19302-19307. by Matthew J. Brauer, Jie Yuan, Bryson D. Bennett, et al.Wenyun Lu, Elizabeth Kimball, David Botstein, Joshua D. Rabinowitz posted to metabolite metabolism mdb-manuscript-1 by michaelbarton on 2009-10-06 12:26:21 as along with 1 person fishtank
	Automated design of synthetic ribosome binding sites to control protein expression. [My Copy] Nature biotechnology, Vol. 27, No. 10. (04 October 2009), pp. 946-950. by Howard M. Salis, Ethan A. Mirsky, Christopher A. Voigt posted to gene-expression ecoli by michaelbarton on 2009-10-05 16:05:07 as along with 4 people and 1 group pmalkus johntheap mhamidi dbikard BergmanLab
	Empirical Study of Data Sharing by Authors Publishing in PLoS Journals [My Copy] PLoS ONE, Vol. 4, No. 9. (18 September 2009), e7078. by Caroline J. Savage, Andrew J. Vickers posted to open-science by michaelbarton on 2009-09-30 12:07:29 as along with 6 people and 1 group daforerog AlexandraSar scmelton druvus dullhunk CameronNeylon BergmanLab
	Design Parameters to Control Synthetic Gene Expression in Escherichia coli [My Copy] PLoS ONE, Vol. 4, No. 9. (14 September 2009), e7002. by Mark Welch, Sridhar Govindarajan, Jon E. Ness, et al.Alan Villalobos, Austin Gurney, Jeremy Minshull, Claes Gustafsson posted to codon-usage by michaelbarton on 2009-09-15 12:53:59 as along with 6 people and 1 group dbikard RasmusJensen pala0088 jjray Vincent_Rouilly bmduggan Synthetic Biology
	Quantitative phylogenetic assessment of microbial communities in diverse environments. [My Copy] Science (New York, N.Y.), Vol. 315, No. 5815. (23 February 2007), pp. 1126-1130. by C. von Mering, P. Hugenholtz, J. Raes, et al.S. G. Tringe, T. Doerks, L. J. Jensen, N. Ward, P. Bork posted to phylogenomics metagenomics by michaelbarton on 2009-09-09 18:00:42 as along with 19 people and 7 groups hwright pkm idoerg sriesenfeld skembel kozo-ni ana nickluscombe michC bluto agg19954 TaqSys azazello Thaverkamp larsjuhljensen rvgomes mjetten jlgreen djkt structural_bioinformatics Bioinformatics EBI-regulation Microbial-Ecology microbiology_nijmegen Green Lab iSEEM
	Phylogenetic detection of horizontal gene transfer during the step-wise genesis of Mycobacterium tuberculosis [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (2009), 196. by Frederic Veyrier, Daniel Pletzer, Christine Turenne, Marcel Behr posted to phylogenomics gene-transfer by michaelbarton on 2009-09-09 16:05:33 as along with 1 person druvus
	Comparative genomic analyses of Streptococcus mutans provide insights into chromosomal shuffling and species-specific content [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 358. by Fumito Maruyama, Mitsuhiko Kobata, Ken Kurokawa, et al.Keishin Nishida, Atsuo Sakurai, Kazuhiko Nakano, Ryota Nomura, Shigetada Kawabata, Takashi Ooshima, Kenta Nakai, Masahira Hattori, Shigeyuki Hamada, Ichiro Nakagawa posted to phylogenomics by michaelbarton on 2009-09-09 16:02:54 as
	Googling Food Webs: Can an Eigenvector Measure Species' Importance for Coextinctions? [My Copy] PLoS Comput Biol, Vol. 5, No. 9. (4 September 2009), e1000494. by Stefano Allesina, Mercedes Pascual posted to no-tag by michaelbarton on 2009-09-08 11:46:08 as along with 6 people and 1 group jaia peterso maren phig neils thomaskelder MCB
	Darwinian evolution in the light of genomics [My Copy] Nucl. Acids Res., Vol. 37, No. 4. (1 March 2009), pp. 1011-1034. by Eugene V. Koonin posted to evolution by michaelbarton on 2009-08-20 11:33:27 as along with 23 people and 2 groups jasontsai vvoorr qayub polivares pawelsobko Zephyrus gwallau dayjm nurban natstreet druvus biomcgary mlog tomhebbron haloin VGreiff lizbiogen inquil lp2 gjuggler guhjy sebastien_vigneau sjcockell Journal picks LabDros
	MetaSim—A Sequencing Simulator for Genomics and Metagenomics [My Copy] PLoS ONE, Vol. 3, No. 10. (8 October 2008), e3373. by Daniel C. Richter, Felix Ott, Alexander F. Auch, Ramona Schmid, Daniel H. Huson posted to srs-simulation srs by michaelbarton on 2009-08-17 11:57:01 as along with 10 people and 2 groups jonilaserson polivares idoerg sriesenfeld skembel guhjy azazello hpaces druvus nuin BergmanLab iSEEM
	Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (26 September 2008), e1000186. by Steven L. Salzberg, Daniel D. Sommer, Daniela Puiu, Vincent T. Lee posted to srs-assembly srs genome-sequencing genome-annotation by michaelbarton on 2009-08-15 18:57:05 as along with 16 people and 5 groups n00c operon azazello Thaverkamp dakelley sconlan GustavoLacerda treangen natstreet antonkratz druvus vaulot djkt Katje stajich semrich BergmanLab Papers recommended by the Roscoff Plankton Group iSEEM microbiology_nijmegen Mycology
	De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae. [My Copy] Genome research, Vol. 19, No. 2. (17 February 2009), pp. 294-305. by Josephine A. Reinhardt, David A. Baltrus, Marc T. Nishimura, William R. Jeck, Corbin D. Jones, Jeffery L. Dangl posted to srs genome-sequencing by michaelbarton on 2009-08-15 18:56:09 as along with 13 people and 2 groups pachorip ThomasDOtto robsyme orzenil AaronDarling druvus dakelley Huub_odc usagi-kirin abizar acn jbhiatt hpaces SIMR bioinformatics Bioinformatics
	Avoiding dangerous missense: thermophiles display especially low mutation rates. [My Copy] PLoS genetics, Vol. 5, No. 6. (19 June 2009), e1000520. by John W. Drake posted to thermophile extremophile evolution by michaelbarton on 2009-08-15 18:55:14 as along with 4 people jasontsai operon jjray bpcusack
	Local Adaptation of Bacteriophages to Their Bacterial Hosts in Soil [My Copy] Science, Vol. 325, No. 5942. (14 August 2009), 833. by Michiel Vos, Philip J. Birkett, Elizabeth Birch, Robert I. Griffiths, Angus Buckling posted to metagenomics environment by michaelbarton on 2009-08-15 18:54:26 as along with 3 people and 1 group maren timothee-poisot djkt iSEEM
	A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (14 August 2009), e1000465. by Yuzhen Ye, Thomas G. Doak posted to metabolism genome-sequencing genome-annotation by michaelbarton on 2009-08-15 18:53:55 as along with 6 people and 1 group mstumpf ptrobajo barriot rdiaz kshameer djkt iSEEM
	A Bioinformatician's Guide to Metagenomics [My Copy] Microbiol. Mol. Biol. Rev., Vol. 72, No. 4. (1 December 2008), pp. 557-578. by Victor Kunin, Alex Copeland, Alla Lapidus, Konstantinos Mavromatis, Philip Hugenholtz posted to metagenomics by michaelbarton on 2009-08-15 18:48:50 as along with 39 people and 8 groups CorinYeats sconlan jasontsai halinat hwright taylor73 esyoun bluto idoerg hpaces skembel inquil EKotlarska anphony stajich sharpton vrich vaulot adgrativol jakechen balicea dbk GustavoLacerda guhjy hessec fhalbrit Zephyrus anazhu dswan sjcockell Borelli druvus azazello kinestetika jmeppley neils Katje allysonlister skato_toyaku Orengo Group Journal Picks Shared Literature Resource of the Microbial Fitness Group - MPI Bremen iSEEM Papers recommended by the Roscoff Plankton Group Microbial-Ecology Translational Bioinformatics Roswell Cancer Crosstalk microbiology_nijmegen
	A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. [My Copy] Molecular Biology and Evolution, Vol. 18, No. 5. (1 May 2001), pp. 691-699. by S. Whelan, N. Goldman posted to mdb-thesis mdb-manuscript-1 evolutionary-rate amino-acid-substitution by michaelbarton on 2009-08-07 16:36:02 as along with 7 people calderonv BioNica bpb chrn ssgong gjuggler gisle
	Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing [My Copy] Journal of the Royal Statistical Society. Series B (Methodological), Vol. 57, No. 1. (1995), pp. 289-300. by Yoav Benjamini, Yosef Hochberg posted to mdb-thesis statistics by michaelbarton on 2009-08-07 14:22:26 as along with 38 people and 4 groups ctacmo abrentnall jperkins CulCog jlorent zufar bertelsen Zephyrus fisherp dakelley lwaldron polivares brianb ucbcjbm jfr xingxu emptyhb renewang Yanno sdvillal druvus natstreet czeller guhjy RMGraze oannes vplagnol frohike grahamc shigepong ccr axelon ugengma amsantos rschulz dragonrez isimpson vertikalist Biostatistics Bioinformatics Regulomics_UCHSC BTS-PT-AS-CS
	Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae. [My Copy] Yeast, Vol. 16, No. 12. (15 September 2000), pp. 1131-1145. by A. Coghlan, K. H. Wolfe posted to codon-usage mdb-thesis yeast by michaelbarton on 2009-07-29 11:35:42 as along with 1 person bjorns
	Influence of metabolic network structure and function on enzyme evolution. [My Copy] Genome biology, Vol. 7, No. 5. (9 May 2006) by Dennis Vitkup, Peter Kharchenko, Andreas Wagner posted to evolution metabolism by michaelbarton on 2009-07-23 10:16:33 as along with 5 people pablocarb chica tny JeremyZucker mdstobbe
	A universal evolutionary index for amino acid changes. [My Copy] Molecular biology and evolution, Vol. 21, No. 8. (August 2004), pp. 1548-1556. by H. Tang, G. J. Wyckoff, J. Lu, C. I. Wu posted to amino-acid-substitution amino-acid-usage by michaelbarton on 2009-07-23 10:13:54 as along with 1 person bpcusack
	Amino acid difference formula to help explain protein evolution. [My Copy] Science (New York, N.Y.), Vol. 185, No. 4154. (6 September 1974), pp. 862-864. by R. Grantham posted to mdb-manuscript-1 amino-acid-usage amino-acid-substitution by michaelbarton on 2009-07-23 10:13:08 as along with 4 people and 1 group thegoose2 tharris Iden-J_GluR gisle C. elegans / WormBase
	Fast and accurate short read alignment with Burrows-Wheeler transform. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1754-1760. by Heng Li, Richard Durbin posted to sequence-alignment srs srs-resequencing by michaelbarton on 2009-07-23 10:11:56 as along with 33 people and 4 groups lianping hzoltan cthachuk maren bozdagd adijr heliopais jmanning2k GustavoLacerda stubrown jessopher guhjy katholt mkiyer jmcq idonaldson polivares darian orzenil cassj inesdesantiago TRHvidsten djkt operon ghattem n00c danmaclean ppgardne nuin rschulz natstreet druvus humburg BergmanLab SIMR bioinformatics Bioinformatics Journal picks
	Mapping short DNA sequencing reads and calling variants using mapping quality scores [My Copy] Genome Research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted to sequence-alignment srs srs-resequencing by michaelbarton on 2009-07-23 10:11:25 as along with 37 people and 2 groups heliopais hzoltan cthachuk darshan adijr darian bozdagd jmanning2k stubrown APRegier ghattem jbhiatt mmartin polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr druvus dandaman xingxu rschulz jmcq inesdesantiago Neeperando nmohelli matthewsuderman bpb gdb farhat SIMR bioinformatics BergmanLab
	F-Seq: a feature density estimator for high-throughput sequence tags [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2537-2538. by Alan P. Boyle, Justin Guinney, Gregory E. Crawford, Terrence S. Furey posted to sequence-alignment statistics by michaelbarton on 2009-07-23 10:10:58 as along with 18 people and 2 groups hzoltan n00c darian idonaldson inesdesantiago gdb ewilban1 tonamswish guhjy kmdaily cassj fhalbrit jfr rschulz polivares cthachuk zhouyu aprasad JLab BergmanLab
	Revisiting the codon adaptation index from a whole-genome perspective: analyzing the relationship between gene expression and codon occurrence in yeast using a variety of models. [My Copy] Nucleic Acids Research, Vol. 31, No. 8. (15 April 2003), pp. 2242-2251. by R. Jansen, H. J. Bussemaker, M. Gerstein posted to yeast mdb-thesis mdb-manuscript-1 gene-expression codon-usage by michaelbarton on 2009-07-19 19:35:03 as along with 1 person nedwards
	Global discovery of adaptive mutations. [My Copy] Nature methods (13 July 2009) by Hani Goodarzi, Alison K. Hottes, Saeed Tavazoie posted to evolutionary-rate by michaelbarton on 2009-07-19 00:30:22 as
	Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 30. (29 July 2008), pp. 10583-10588. by Jennifer F. Biddle, Sorel Fitz-Gibbon, Stephan C. Schuster, Jean E. Brenchley, Christopher H. House posted to comparative-genomics metagenomics by michaelbarton on 2009-07-17 09:39:39 as along with 5 people and 2 groups Thaverkamp jmeppley sriesenfeld skembel skato_toyaku Microbial-Ecology iSEEM
	Insights into the genome of large sulfur bacteria revealed by analysis of single filaments. [My Copy] PLoS biology, Vol. 5, No. 9. (28 September 2007), e230. by M. Mussmann, F. Z. Hu, M. Richter, et al.D. de Beer, A. Preisler, B. B. Jørgensen, M. Huntemann, F. O. Glöckner, R. Amann, W. J. Koopman, R. S. Lasken, B. Janto, J. Hogg, P. Stoodley, R. Boissy, G. D. Ehrlich posted to comparative-genomics extremophile by michaelbarton on 2009-07-17 09:38:14 as along with 2 people skato_toyaku kinestetika
	Heterotachy, an important process of protein evolution. [My Copy] Molecular biology and evolution, Vol. 19, No. 1. (January 2002), pp. 1-7. by P. Lopez, D. Casane, H. Philippe posted to amino-acid-substitution evolutionary-rate by michaelbarton on 2009-07-15 13:26:35 as along with 1 person and 1 group ramiro2k BergmanLab
	Rejecting highly cited papers: The views of scientists who encounter resistance to their discoveries from other scientists [My Copy] Journal of the American Society for Information Science and Technology, Vol. 58, No. 5. (2007), pp. 734-743. by Juan M. Campanario, Erika Acedo posted to bibliometrics by michaelbarton on 2009-07-14 11:09:36 as along with 1 person and 1 group fmccown BergmanLab
	Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream [My Copy] Nat Biotech, Vol. 27, No. 7. (July 2009), pp. 627-632. by Nikos C. Kyrpides posted to genomics by michaelbarton on 2009-07-10 09:24:57 as along with 3 people and 1 group seanyuan sharpton neils BergmanLab
	This revolution will be digitized: online tools for radical collaboration [My Copy] Disease Models & Mechanisms, Vol. 2, No. 5-6. (May 2009), pp. 201-205. by Chris Patil, Vivian Siegel posted to bloggging collaboration by michaelbarton on 2009-07-10 09:24:02 as along with 10 people and 1 group aalves Zephyrus dullhunk leemond31 natstreet druvus ianturton brianb neils psique BergmanLab
	How to stop blogging [My Copy] Nature, Vol. 460, No. 7252. (9 July 2009), pp. 152-152. posted to blogging by michaelbarton on 2009-07-10 09:20:44 as along with 8 people and 4 groups Sergey_gerbek thegoose jennifermjones beanformer AJCann MarioPaolucci dullhunk ppgardne BergmanLab Science 2.0 / Open Science eLearning in Leicester Journal picks
	Fundamentals of Enzyme Kinetics [My Copy] (29 February 2004) by Athel Cornish-Bowden posted to enzyme mdb-thesis metabolism by michaelbarton on 2009-07-08 14:06:46 as along with 2 people Rayn fishtank
	A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations. [My Copy] Nature Biotechnology, Vol. 19, No. 1. (January 2001), pp. 45-50. by L. M. Raamsdonk, B. Teusink, D. Broadhurst, et al.N. Zhang, A. Hayes, M. C. Walsh, J. A. Berden, K. M. Brindle, D. B. Kell, J. J. Rowland, H. V. Westerhoff, K. van Dam, S. G. Oliver posted to gene-dispensability mdb-thesis yeast by michaelbarton on 2009-07-06 16:35:13 as along with 8 people and 3 groups Garth_9145 czeller dbk irenas dullhunk raiyar katerinakal JeremyZucker streptomyces dbk-lab steinmetzlab
	Co-regulation of metabolic genes is better explained by flux coupling than by network distance [My Copy] PLoS Computational Biology, Vol. 4, No. 1. (25 January 2008), e26. by Richard A. Notebaart, Bas Teusink, Roland J. Siezen, Balázs Papp posted to ecoli flux-balance-analysis genome-scale-model mdb-thesis metabolism yeast by michaelbarton on 2009-07-06 16:28:35 as along with 4 people yujiangwang arne maralena jjray
	Yeast and drug discovery. [My Copy] Functional & Integrative Genomics, Vol. 2, No. 4-5. (September 2002), pp. 199-211. by T. R. Hughes posted to mdb-thesis yeast by michaelbarton on 2009-07-03 12:14:10 as along with 1 person Dualsystems
	Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy. [My Copy] Nature Genetics, Vol. 14, No. 4. (December 1996), pp. 450-456. by D. D. Shoemaker, D. A. Lashkari, D. Morris, M. Mittmann, R. W. Davis posted to mdb-thesis by michaelbarton on 2009-07-02 17:28:19 as along with 1 person Kiarostami

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mdb-thesis	112
yeast	65
amino-acid-usage	50
mdb-manuscript-1	46
gene-expression	38
flux-balance-analysis	34
genome-scale-model	34
evolutionary-rate	29
evolution	25
cost-minimisation	24
codon-usage	23
reviewed	21
ecoli	20
gene-dispensability	20
metabolism	20
srs	17
systems-biology	15
amino-acid-substitution	13
environment	13
gene-characteristics	10
metabolic-control-analysis	10
metagenomics	10
nutrient-limitation	10
translation	10
diauxic-shift	8
genomics	8
gc-content	7
gene-duplication	7
transcription	7
evolutionary-systems-biology	6
phylogenomics	6
srs-resequencing	6
statistics	6
amino-acid-cost	5
atomic-content	5
comparative-genomics	5
fitness	5
gene-length	5
genome-annotation	5
genome-sequencing	5
glycolysis	5
haploinsufficiency	5
mutation	5
prote-evolution	5
srs-assembly	5
translational-selection	5
database	4
energy-production	4
extremophile	4
insertion-deletion	4
proteins	4
sequence-alignment	4
snp	4
thermophile	4
trna	4
cost-benefit-analysis	3
enzyme	3
gene-expression-degradation	3
metabolomics	3
pharmacology	3
phylogeny	3
population-genetics	3
protein-structure	3
sequence-homology	3
trna-copy	3
alignment-concatenation	2
classification	2
clustering	2
data-mining	2
drosophila	2
gene-knockout	2
genetic-code	2
genetic-variation	2
gene-transfer	2
genome-scale-model-construction	2
kinetic-modelling	2
model-fitting	2
moma	2
mrna-degradation	2
multiple-sequence-alignment	2
noise	2
non-synonymous-substitutions	2
proteome	2
regulation	2
software	2
srs-challenges	2
standards	2
suboptimal-solution	2
synonymous-substitutions	2
transcription-factors	2
transcriptome	2
translational-accuracy	2
akaike-information-criterion	1
alignment	1
bibliometrics	1
binding-sites	1
bioruby	1
bloggging	1
blogging	1
buchnera	1
chemicals	1
citation-analysis	1
collaboration	1
density	1
drug	1
endosymbiotic	1
eubacteria	1
functional-constaint	1
functional-constraint	1
gene-prediction	1
genome-annoation	1
genome-duplication	1
hiv	1
insertions-deletions	1
instance-rate-matrix	1
isoenzymes	1
lac-operon	1
lactose	1
linear-optimisation	1
log-likelihood	1
metabolic_efficiency	1
metabolic-engineering	1
metabolite	1
metabolome	1
microarray	1
modelling	1
mrna-stability	1
mrn-degradation	1
multivariate	1
network-analysis	1
non-coding-dna	1
normalisation	1
ontology	1
open-science	1
page-rank	1
paralogs	1
paramter-scanning	1
phenotype-prediction	1
promoters	1
protein-atomic-content	1
protein-degradation	1
protein-production	1
purifying-selection	1
regression	1
research	1
review	1
ribosomal	1
ribosomal-density	1
rna-structure	1
room	1
ruby	1
sequence	1
shadow-prices	1
solexa	1
species-tree	1
srs-deep	1
srs-simulation	1
strain-design	1
structural-constraint	1
sulfur	1
symbiosis	1
tap-tag	1
thermophiles	1
tiling-array	1
trace-metals	1
transcription-network	1
transposable-elements	1
virus	1

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