michaelbarton's Palsson [26 articles] Export

Recent papers posted to michaelbarton's library by the author Palsson. You can also see everyone's Palsson.

	Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima [My Copy] Science, Vol. 325, No. 5947. (18 September 2009), pp. 1544-1549. by Ying Zhang, Ines Thiele, Dana Weekes, et al.Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley M. Deacon, John Wooley, Scott A. Lesley, Ian A. Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik posted to no-tag by michaelbarton on 2009-11-10 10:53:06 as along with 13 people venancio schwartzjmc apocapoc eehsanipour riffraff reyez TRHvidsten flbarroso daveGerrard zwang pablocarb phoenixzxl roys
	Applications of genome-scale metabolic reconstructions [My Copy] Molecular Systems Biology, Vol. 5 (03 November 2009) by Matthew A. Oberhardt, Bernhard O. Palsson, Jason A. Papin posted to genome-scale-model by michaelbarton on 2009-11-06 16:55:47 as along with 3 people pjmaybank arne pablocarb
	Using in silico models to simulate dual perturbation experiments: procedure development and interpretation of outcomes. [My Copy] BMC systems biology, Vol. 3 (2009) by N. Jamshidi, B. Palsson posted to flux-balance-analysis by michaelbarton on 2009-06-15 23:28:50 as
	Connecting extracellular metabolomic measurements to intracellular flux states in yeast [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 37. by Monica Mo, Bernhard Palsson, Markus Herrgard posted to flux-balance-analysis yeast by michaelbarton on 2009-04-17 10:08:36 as along with 1 person schwartzjmc
	Large-scale evaluation of in silico gene deletions in Saccharomyces cerevisiae. [My Copy] OMICS, Vol. 7, No. 2. (2003), pp. 193-202. by J. Förster, I. Famili, B. O Palsson, J. Nielsen posted to flux-balance-analysis gene-dispensability genome-scale-model mdb-thesis yeast by michaelbarton on 2009-01-29 20:04:43 as along with 1 person and 1 group irenas dbk-lab
	Three factors underlying incorrect in silico predictions of essential metabolic genes [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Scott Becker, Bernhard O. Palsson posted to fitness flux-balance-analysis gene-dispensability genome-scale-model mdb-thesis systems-biology by michaelbarton on 2009-01-29 18:41:09 as along with 1 person renatomilani
	Genome-scale metabolic model of Helicobacter pylori 26695. [My Copy] Journal of bacteriology, Vol. 184, No. 16. (August 2002), pp. 4582-4593. by C. H. Schilling, M. W. Covert, I. Famili, G. M. Church, J. S. Edwards, Palsson posted to genome-scale-model by michaelbarton on 2009-01-27 16:47:22 as
	Modeling methanogenesis with a genome-scale metabolic reconstruction of Methanosarcina barkeri [My Copy] Mol Syst Biol, Vol. 2 (31 January 2006) by Adam M. Feist, Johannes C. Scholten, Bernhard Palsson, Fred J. Brockman, Trey Ideker posted to genome-scale-model by michaelbarton on 2009-01-27 16:46:22 as along with 2 people JeremyZucker lylu
	Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae. [My Copy] Genome Res, Vol. 16, No. 5. (May 2006), pp. 627-635. by M. J. Herrgård, B. S. Lee, V. Portnoy, B. Ø. Palsson posted to genome-scale-model by michaelbarton on 2009-01-27 16:44:52 as along with 8 people and 3 groups JeremyZucker nickluscombe aswin kengg koller raiyar cjeans edwardmorrissey EBI-regulation steinmetzlab Plantandetc
	Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. [My Copy] Genome Research, Vol. 13, No. 2. (1 February 2003), pp. 244-253. by J. Förster, I. Famili, P. Fu, Palsson, J. Nielsen posted to genome-scale-model by michaelbarton on 2009-01-27 16:43:16 as along with 11 people and 3 groups sergiun schwartzjmc csanford opheliav wnpx nirfriedman JeremyZucker bsmagic gcalda jpoyatos edwardmorrissey Bioinformatics bioinplant MetabolicModeling
	Global reconstruction of the human metabolic network based on genomic and bibliomic data. [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 6. (6 February 2007), pp. 1777-1782. by Natalie C. C. Duarte, Scott A. A. Becker, Neema Jamshidi, et al.Ines Thiele, Monica L. L. Mo, Thuy D. D. Vo, Rohith Srivas, Bernhard O. Palsson posted to genome-scale-model mdb-thesis by michaelbarton on 2009-01-27 16:43:05 as along with 9 people and 1 group vpenelle peterli schwartzjmc dullhunk guhjy balajis alexg raiyar noby steinmetzlab
	Genome-scale Reconstruction of Metabolic Network in Bacillus subtilis Based on High-throughput Phenotyping and Gene Essentiality Data. [My Copy] J Biol Chem, Vol. 282, No. 39. (28 September 2007), pp. 28791-28799. by Y. K. Oh, Palsson, S. M. Park, C. H. Schilling, R. Mahadevan posted to genome-scale-model by michaelbarton on 2009-01-27 16:42:50 as along with 8 people and 1 group JeremyZucker coela schwartzjmc aschmeis jholder lflorez alexg hryk MetabolicModeling
	Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network. [My Copy] Applied microbiology and biotechnology, Vol. 80, No. 5. (October 2008), pp. 849-862. by J. Lee, H. Yun, A. M. Feist, Palsson, S. Y. Lee posted to genome-scale-model by michaelbarton on 2009-01-27 16:42:33 as along with 2 people JeremyZucker operon
	Reconstruction of biochemical networks in microorganisms. [My Copy] Nature Reviews Microbiology (31 December 2008), pp. 129-143. by Adam M. M. Feist, Markus J. J. Herrgård, Ines Thiele, Jennie L. L. Reed, Bernhard O. Palsson posted to genome-scale-model genome-scale-model-construction mdb-thesis by michaelbarton on 2009-01-16 23:26:14 as along with 10 people and 1 group coela roys rdiaz mycomodel tobitas pinney friveroll behindtherabbit druvus dullhunk Bioinformatics
	Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox. [My Copy] Nature Protocols, Vol. 2, No. 3. (2007), pp. 727-738. by S. A. Becker, A. M. Feist, M. L. Mo, G. Hannum, Palsson, M. J. Herrgard posted to mdb-thesis mdb-manuscript-1 flux-balance-analysis by michaelbarton on 2008-12-19 18:06:19 as along with 6 people eline_koers yujiangwang lflorez guhjy alexg edwardmorrissey
	An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). [My Copy] Genome Biology, Vol. 4, No. 9. (2003), R54. by Jennifer L. Reed, Thuy D. Vo, Christophe H. Schilling, Bernhard O. Palsson posted to systems-biology metabolism mdb-thesis mdb-manuscript-1 genome-scale-model flux-balance-analysis ecoli by michaelbarton on 2008-12-19 18:01:13 as along with 5 people and 2 groups schwartzjmc csanford cate bjorns JeremyZucker biospec MetabolicModeling
	Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network. [My Copy] Proceedings of the National Academy of Sciences, Vol. 100, No. 23. (11 November 2003), pp. 13134-13139. by I. Famili, J. Förster, J. Nielsen, B. O. Palsson posted to yeast systems-biology metabolism mdb-thesis mdb-manuscript-1 genome-scale-model flux-balance-analysis diauxic-shift by michaelbarton on 2008-12-12 15:01:29 as along with 2 people JeremyZucker koller
	Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model. [My Copy] Genome Research, Vol. 14, No. 7. (July 2004), pp. 1298-1309. by N. C. Duarte, M. J. Herrgård, B. O. Palsson posted to yeast mdb-thesis mdb-manuscript-1 genomics genome-scale-model flux-balance-analysis by michaelbarton on 2008-12-11 14:55:10 as along with 3 people RMGraze edwardmorrissey westoll
	Genome-scale analysis of the uses of the Escherichia coli genome: model-driven analysis of heterogeneous data sets. [My Copy] Journal of bacteriology, Vol. 185, No. 21. (November 2003), pp. 6392-6399. by T. E. Allen, M. J. Herrgård, M. Liu, et al.Y. Qiu, J. D. Glasner, F. R. Blattner, Palsson posted to translation transcription systems-biology ribosomal reviewed promoters nutrient-limitation mrn-degradation metabolism mdb-thesis mdb-manuscript-1 gene-length gene-expression-degradation gene-expression flux-balance-analysis energy-production ecoli density cost-benefit-analysis amino-acid-usage by michaelbarton on 2008-10-17 14:55:43 as
	A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology [My Copy] Nature Biotechnology, Vol. 26, No. 10. (09 October 2008), pp. 1155-1160. by Markus J. Herrgard, Neil Swainston, Paul Dobson, et al.Warwick B. Dunn, K. Yalcin Arga, Mikko Arvas, Nils Buthgen, Simon Borger, Roeland Costenoble, Matthias Heinemann, Michael Hucka, Nicolas Le Novere, Peter Li, Wolfram Liebermeister, Monica L. Mo, Ana P. Oliveira, Dina Petranovic, Stephen Pettifer, Evangelos Simeonidis, Kieran Smallbone, Irena Spasie, Dieter Weichart, Roger Brent, David S. Broomhead, Hans V. Westerhoff, Betul Kurdar, Merja Penttila, Edda Klipp, Bernhard O. Palsson, Uwe Sauer, Stephen G. Oliver, Pedro Mendes, Jens Nielsen, Douglas B. Kell posted to flux-balance-analysis genome-scale-model mdb-thesis yeast by michaelbarton on 2008-10-10 14:19:56 as along with 22 people and 2 groups m_j pmendes windman83 jfr raiyar neilswainston irenas JeremyZucker chasmand schwartzjmc pinney pauldobson alaninmcr allysonlister zwang guhjy dbk ptrobajo neils dullhunk pengchy tmmurali MetabolicModeling BergmanLab
	Integrated analysis of metabolic phenotypes in Saccharomyces cerevisiae. [My Copy] BMC Genomics, Vol. 5, No. 1. (8 September 2004) by N. C. Duarte, Palsson, P. Fu posted to yeast mdb-manuscript-1 genome-scale-model flux-balance-analysis by michaelbarton on 2008-08-29 15:35:01 as along with 1 person and 1 group JeremyZucker MetabolicModeling
	A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information [My Copy] Molecular Systems Biology, Vol. 3 (26 June 2007), 121. by Adam M. Feist, Christopher S. Henry, Jennifer L. Reed, et al.Markus Krummenacker, Andrew R. Joyce, Peter D. Karp, Linda J. Broadbelt, Vassily Hatzimanikatis, Bernhard O. Palsson posted to mdb-thesis mdb-manuscript-1 genome-scale-model by michaelbarton on 2008-07-11 12:27:00 as along with 7 people winterstream aheilbut schwartzjmc alexg cjeans hryk JeremyZucker
	Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: assessment of correlated reaction subsets that comprise network states. [My Copy] Genome Res, Vol. 14, No. 9. (September 2004), pp. 1797-1805. by J. L. Reed, Palsson posted to mdb-manuscript-1 by michaelbarton on 2008-07-10 18:19:37 as along with 4 people JeremyZucker yujiangwang comb lylu
	Stoichiometric interpretation of Escherichia coli glucose catabolism under various oxygenation rates. [My Copy] Applied Environmental Microbiology, Vol. 59, No. 8. (August 1993), pp. 2465-2473. by A. Varma, B. W. Boesch, B. O. Palsson posted to shadow-prices reviewed metabolism mdb-thesis mdb-manuscript-1 glycolysis genome-scale-model flux-balance-analysis energy-production ecoli diauxic-shift cost-minimisation by michaelbarton on 2008-06-17 11:19:02 as along with 1 person madhadron
	The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli [My Copy] Nature Biotechnology, Vol. 26, No. 6. (06 June 2008), pp. 659-667. by Adam M. Feist, Bernhard O. Palsson posted to ecoli evolution evolutionary-systems-biology genome-scale-model genomics mdb-thesis metabolic-engineering metabolomics network-analysis phenotype-prediction reviewed strain-design systems-biology by michaelbarton on 2008-06-14 10:35:25 as along with 6 people and 2 groups eline_koers schwartzjmc lflorez fishtank ptrobajo AlexanderPico BergmanLab TNT
	Systems biology of SNPs [My Copy] Mol Syst Biol, Vol. 2 (4 July 2006), pp. E1-E4. by Neema Jamshidi, Bernhard Palsson posted to evolutionary-rate snp by michaelbarton on 2008-04-22 18:13:07 as along with 7 people and 5 groups Sonix dchughes raiyar massivemayhem cat_worth dbgrant jo_davies structural_bioinformatics G4ID steinmetzlab Genetics-of-Gambling BergmanLab

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mdb-thesis	112
yeast	65
amino-acid-usage	50
mdb-manuscript-1	46
gene-expression	38
flux-balance-analysis	34
genome-scale-model	34
evolutionary-rate	29
evolution	25
cost-minimisation	24
codon-usage	23
reviewed	21
ecoli	20
gene-dispensability	20
metabolism	20
srs	17
systems-biology	15
amino-acid-substitution	13
environment	13
gene-characteristics	10
metabolic-control-analysis	10
metagenomics	10
nutrient-limitation	10
translation	10
diauxic-shift	8
genomics	8
gc-content	7
gene-duplication	7
transcription	7
evolutionary-systems-biology	6
phylogenomics	6
srs-resequencing	6
statistics	6
amino-acid-cost	5
atomic-content	5
comparative-genomics	5
fitness	5
gene-length	5
genome-annotation	5
genome-sequencing	5
glycolysis	5
haploinsufficiency	5
mutation	5
prote-evolution	5
srs-assembly	5
translational-selection	5
database	4
energy-production	4
extremophile	4
insertion-deletion	4
proteins	4
sequence-alignment	4
snp	4
thermophile	4
trna	4
cost-benefit-analysis	3
enzyme	3
gene-expression-degradation	3
metabolomics	3
pharmacology	3
phylogeny	3
population-genetics	3
protein-structure	3
sequence-homology	3
trna-copy	3
alignment-concatenation	2
classification	2
clustering	2
data-mining	2
drosophila	2
gene-knockout	2
genetic-code	2
genetic-variation	2
gene-transfer	2
genome-scale-model-construction	2
kinetic-modelling	2
model-fitting	2
moma	2
mrna-degradation	2
multiple-sequence-alignment	2
noise	2
non-synonymous-substitutions	2
proteome	2
regulation	2
software	2
srs-challenges	2
standards	2
suboptimal-solution	2
synonymous-substitutions	2
transcription-factors	2
transcriptome	2
translational-accuracy	2
akaike-information-criterion	1
alignment	1
bibliometrics	1
binding-sites	1
bioruby	1
bloggging	1
blogging	1
buchnera	1
chemicals	1
citation-analysis	1
collaboration	1
density	1
drug	1
endosymbiotic	1
eubacteria	1
functional-constaint	1
functional-constraint	1
gene-prediction	1
genome-annoation	1
genome-duplication	1
hiv	1
insertions-deletions	1
instance-rate-matrix	1
isoenzymes	1
lac-operon	1
lactose	1
linear-optimisation	1
log-likelihood	1
metabolic_efficiency	1
metabolic-engineering	1
metabolite	1
metabolome	1
microarray	1
modelling	1
mrna-stability	1
mrn-degradation	1
multivariate	1
network-analysis	1
non-coding-dna	1
normalisation	1
ontology	1
open-science	1
page-rank	1
paralogs	1
paramter-scanning	1
phenotype-prediction	1
promoters	1
protein-atomic-content	1
protein-degradation	1
protein-production	1
purifying-selection	1
regression	1
research	1
review	1
ribosomal	1
ribosomal-density	1
rna-structure	1
room	1
ruby	1
sequence	1
shadow-prices	1
solexa	1
species-tree	1
srs-deep	1
srs-simulation	1
strain-design	1
structural-constraint	1
sulfur	1
symbiosis	1
tap-tag	1
thermophiles	1
tiling-array	1
trace-metals	1
transcription-network	1
transposable-elements	1
virus	1

michaelbarton's Palsson [26 articles] Export

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