michaelbarton's amino-acid-substitution [13 articles] Export

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	A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. [My Copy] Molecular Biology and Evolution, Vol. 18, No. 5. (1 May 2001), pp. 691-699. by S. Whelan, N. Goldman posted to mdb-thesis mdb-manuscript-1 evolutionary-rate amino-acid-substitution by michaelbarton on 2009-08-07 16:36:02 as along with 7 people calderonv BioNica bpb chrn ssgong gjuggler gisle
	A universal evolutionary index for amino acid changes. [My Copy] Molecular biology and evolution, Vol. 21, No. 8. (August 2004), pp. 1548-1556. by H. Tang, G. J. Wyckoff, J. Lu, C. I. Wu posted to amino-acid-substitution amino-acid-usage by michaelbarton on 2009-07-23 10:13:54 as along with 1 person bpcusack
	Amino acid difference formula to help explain protein evolution. [My Copy] Science (New York, N.Y.), Vol. 185, No. 4154. (6 September 1974), pp. 862-864. by R. Grantham posted to mdb-manuscript-1 amino-acid-usage amino-acid-substitution by michaelbarton on 2009-07-23 10:13:08 as along with 4 people and 1 group thegoose2 tharris Iden-J_GluR gisle C. elegans / WormBase
	Heterotachy, an important process of protein evolution. [My Copy] Molecular biology and evolution, Vol. 19, No. 1. (January 2002), pp. 1-7. by P. Lopez, D. Casane, H. Philippe posted to amino-acid-substitution evolutionary-rate by michaelbarton on 2009-07-15 13:26:35 as along with 1 person and 1 group ramiro2k BergmanLab
	Modeling residue usage in aligned protein sequences via maximum likelihood. [My Copy] Mol Biol Evol, Vol. 13, No. 10. (December 1996), pp. 1368-1374. by W. J. Bruno posted to amino-acid-substitution amino-acid-usage evolutionary-rate mdb-thesis by michaelbarton on 2009-03-02 22:56:59 as
	An analysis of determinants of amino acids substitution rates in bacterial proteins. [My Copy] Molecular Biology and Evolution, Vol. 21, No. 1. (January 2004), pp. 108-116. by E. P. Rocha, A. Danchin posted to mdb-thesis mdb-manuscript-1 evolutionary-rate evolution ecoli cost-minimisation amino-acid-usage amino-acid-substitution by michaelbarton on 2009-01-29 17:15:51 as along with 5 people and 1 group bjorns tny penka jpoyatos skumagai Nie
	Protein material costs: single atoms can make an evolutionary difference [My Copy] Trends in Genetics, Vol. 25, No. 1. (January 2009), pp. 5-8. by J. Bragg, A. Wagner posted to amino-acid-substitution amino-acid-usage cost-benefit-analysis cost-minimisation evolutionary-rate fitness gene-expression insertion-deletion nutrient-limitation proteins by michaelbarton on 2009-01-14 14:26:12 as along with 1 group BergmanLab
	Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis [My Copy] Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635. by Ari Loytynoja, Nick Goldman posted to amino-acid-substitution evolution evolutionary-rate insertions-deletions multiple-sequence-alignment reviewed sequence-homology by michaelbarton on 2008-07-24 17:07:58 as along with 29 people and 3 groups memerman operon TRHvidsten BioNica cmzmasek timflutre pradiptaray alexeid marti bpcusack hpaces dinnes gjuggler djkt ArtemPankin phoenixzxl jago marck imtechnology aprasad zwang bmaust bpb Schmidtc AbnerCYH gulsacan emptyhb jlgreen nuin Khavkin's lab iSEEM Green Lab
	A genome-wide survey of changes in protein evolutionary rates across four closely related species of Saccharomyces sensu stricto group [My Copy] BMC Evolutionary Biology, Vol. 7 (29 January 2007), 9. by Yoshihiro Kawahara, Tadashi Imanishi posted to yeast synonymous-substitutions reviewed non-synonymous-substitutions multiple-sequence-alignment genomics gene-expression gene-duplication functional-constaint evolutionary-rate evolution amino-acid-substitution by michaelbarton on 2008-04-29 11:55:34 as
	Functional genomic analysis of the rates of protein evolution. [My Copy] Proceedings of the National Academy of Sciences, Vol. 102, No. 15. (12 April 2005), pp. 5483-5488. by D. P. Wall, A. E. Hirsh, H. B. Fraser, et al.J. Kumm, G. Giaever, M. B. Eisen, M. W. Feldman posted to yeast synonymous-substitutions reviewed non-synonymous-substitutions noise mdb-thesis mdb-manuscript-1 gene-knockout gene-expression gene-dispensability evolutionary-rate evolution amino-acid-substitution by michaelbarton on 2008-04-22 12:32:12 as along with 7 people and 1 group mgomes phoenixzxl bjorns balajis opheliav penka RamuAnandakrishnan Nie
	A universal trend of amino acid gain and loss in protein evolution [My Copy] Nature, Vol. aop, No. current. (19 January 2005) by I. King Jordan, Fyodor A. Kondrashov, Ivan A. Adzhubei, et al.Yuri I. Wolf, Eugene V. Koonin, Alexey S. Kondrashov, Shamil Sunyaev posted to amino-acid-substitution amino-acid-usage genetic-code reviewed by michaelbarton on 2008-03-20 11:19:47 as along with 4 people kirasato karbak gisle nagendranow
	Protein evolution: Causes of trends in amino-acid gain and loss [My Copy] Nature, Vol. 442, No. 7105. (23 August 2006), pp. E11-E12. by Laurence D. Hurst, Edward J. Feil, Eduardo P. C. Rocha posted to reviewed purifying-selection mutation evolution cost-minimisation amino-acid-usage amino-acid-substitution by michaelbarton on 2008-03-20 11:17:42 as along with 2 people kirasato bjorns
	Functional restraints on the patterns of amino acid substitutions: Application to sequence-structure homology recognition [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 61, No. 4. (2005), pp. 722-731. by Vijayalakshmi Chelliah, Tom Blundell, Kenji Mizuguchi posted to amino-acid-substitution binding-sites evolution functional-constraint proteins sequence-homology structural-constraint by michaelbarton on 2008-03-06 16:13:32 as along with 1 person nickolay

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mdb-thesis	112
yeast	65
amino-acid-usage	50
mdb-manuscript-1	46
gene-expression	38
flux-balance-analysis	34
genome-scale-model	34
evolutionary-rate	29
evolution	25
cost-minimisation	24
codon-usage	23
reviewed	21
ecoli	20
gene-dispensability	20
metabolism	20
srs	17
systems-biology	15
amino-acid-substitution	13
environment	13
gene-characteristics	10
metabolic-control-analysis	10
metagenomics	10
nutrient-limitation	10
translation	10
diauxic-shift	8
genomics	8
gc-content	7
gene-duplication	7
transcription	7
evolutionary-systems-biology	6
phylogenomics	6
srs-resequencing	6
statistics	6
amino-acid-cost	5
atomic-content	5
comparative-genomics	5
fitness	5
gene-length	5
genome-annotation	5
genome-sequencing	5
glycolysis	5
haploinsufficiency	5
mutation	5
prote-evolution	5
srs-assembly	5
translational-selection	5
database	4
energy-production	4
extremophile	4
insertion-deletion	4
proteins	4
sequence-alignment	4
snp	4
thermophile	4
trna	4
cost-benefit-analysis	3
enzyme	3
gene-expression-degradation	3
metabolomics	3
pharmacology	3
phylogeny	3
population-genetics	3
protein-structure	3
sequence-homology	3
trna-copy	3
alignment-concatenation	2
classification	2
clustering	2
data-mining	2
drosophila	2
gene-knockout	2
genetic-code	2
genetic-variation	2
gene-transfer	2
genome-scale-model-construction	2
kinetic-modelling	2
model-fitting	2
moma	2
mrna-degradation	2
multiple-sequence-alignment	2
noise	2
non-synonymous-substitutions	2
proteome	2
regulation	2
software	2
srs-challenges	2
standards	2
suboptimal-solution	2
synonymous-substitutions	2
transcription-factors	2
transcriptome	2
translational-accuracy	2
akaike-information-criterion	1
alignment	1
bibliometrics	1
binding-sites	1
bioruby	1
bloggging	1
blogging	1
buchnera	1
chemicals	1
citation-analysis	1
collaboration	1
density	1
drug	1
endosymbiotic	1
eubacteria	1
functional-constaint	1
functional-constraint	1
gene-prediction	1
genome-annoation	1
genome-duplication	1
hiv	1
insertions-deletions	1
instance-rate-matrix	1
isoenzymes	1
lac-operon	1
lactose	1
linear-optimisation	1
log-likelihood	1
metabolic_efficiency	1
metabolic-engineering	1
metabolite	1
metabolome	1
microarray	1
modelling	1
mrna-stability	1
mrn-degradation	1
multivariate	1
network-analysis	1
non-coding-dna	1
normalisation	1
ontology	1
open-science	1
page-rank	1
paralogs	1
paramter-scanning	1
phenotype-prediction	1
promoters	1
protein-atomic-content	1
protein-degradation	1
protein-production	1
purifying-selection	1
regression	1
research	1
review	1
ribosomal	1
ribosomal-density	1
rna-structure	1
room	1
ruby	1
sequence	1
shadow-prices	1
solexa	1
species-tree	1
srs-deep	1
srs-simulation	1
strain-design	1
structural-constraint	1
sulfur	1
symbiosis	1
tap-tag	1
thermophiles	1
tiling-array	1
trace-metals	1
transcription-network	1
transposable-elements	1
virus	1

michaelbarton's amino-acid-substitution [13 articles] Export

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