michaelbarton's reviewed [21 articles] Export

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	Schemes of flux control in a model of Saccharomyces cerevisiae glycolysis. [My Copy] Eur J Biochem, Vol. 269, No. 16. (August 2002), pp. 3894-3904. by L. Pritchard, D. B. Kell posted to energy-production glycolysis kinetic-modelling metabolic-control-analysis metabolism metabolomics model-fitting paramter-scanning reviewed systems-biology yeast by michaelbarton on 2009-01-15 16:51:13 as along with 6 people and 2 groups pmendes schwartzjmc peterli dbk LeightonP dullhunk streptomyces dbk-lab
	Sulfur sparing in the yeast proteome in response to sulfur demand. [My Copy] Molecular cell, Vol. 9, No. 4. (April 2002), pp. 713-723. by M. Fauchon, G. Lagniel, J. C. Aude, et al.L. Lombardia, P. Soularue, C. Petat, G. Marguerie, A. Sentenac, M. Werner, J. Labarre posted to amino-acid-usage cost-minimisation gene-duplication gene-expression isoenzymes mdb-thesis nutrient-limitation reviewed sulfur by michaelbarton on 2008-10-17 15:17:09 as
	Genome-scale analysis of the uses of the Escherichia coli genome: model-driven analysis of heterogeneous data sets. [My Copy] Journal of bacteriology, Vol. 185, No. 21. (November 2003), pp. 6392-6399. by T. E. Allen, M. J. Herrgård, M. Liu, et al.Y. Qiu, J. D. Glasner, F. R. Blattner, Palsson posted to translation transcription systems-biology ribosomal reviewed promoters nutrient-limitation mrn-degradation metabolism mdb-thesis mdb-manuscript-1 gene-length gene-expression-degradation gene-expression flux-balance-analysis energy-production ecoli density cost-benefit-analysis amino-acid-usage by michaelbarton on 2008-10-17 14:55:43 as
	Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis [My Copy] Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635. by Ari Loytynoja, Nick Goldman posted to amino-acid-substitution evolution evolutionary-rate insertions-deletions multiple-sequence-alignment reviewed sequence-homology by michaelbarton on 2008-07-24 17:07:58 as along with 29 people and 3 groups memerman operon TRHvidsten BioNica cmzmasek timflutre pradiptaray alexeid marti bpcusack hpaces dinnes gjuggler djkt ArtemPankin phoenixzxl jago marck imtechnology aprasad zwang bmaust bpb Schmidtc AbnerCYH gulsacan emptyhb jlgreen nuin Khavkin's lab iSEEM Green Lab
	Optimality and evolutionary tuning of the expression level of a protein. [My Copy] Nature, Vol. 436, No. 7050. (28 July 2005), pp. 588-592. by Erez Dekel, Uri Alon posted to reviewed lactose lac-operon gene-expression cost-minimisation cost-benefit-analysis by michaelbarton on 2008-07-03 10:36:06 as along with 5 people bpcusack rklancer guyshinar comb marcio
	Evolvability and hierarchy in rewired bacterial gene networks [My Copy] Nature, Vol. 452, No. 7189. (17 April 2008), pp. 840-845. by Mark Isalan, Caroline Lemerle, Konstantinos Michalodimitrakis, et al.Carsten Horn, Pedro Beltrao, Emanuele Raineri, Mireia Garriga-Canut, Luis Serrano posted to ecoli evolution evolutionary-systems-biology fitness gene-duplication gene-expression reviewed transcription-factors transcription-network by michaelbarton on 2008-06-30 13:49:56 as along with 26 people and 4 groups Asclepius yyfwuhan biomcgary megraw chica jimineep balabu kaarsinogen aalibes tmmurali dullhunk neils cmzmasek AbnerCYH josedavid biehl caseybrown Garamonfok austin hryk dbikard cactus margaritis chad_davis aheilbut zwang GEB Centre de Recherches Interdisciplinaires SynBioSys BergmanLab
	Population genomics of domestic and wild yeasts : Nature Precedings [My Copy] posted to codon-usage environment evolution gene-expression genetic-variation genomics insertion-deletion mutation population-genetics reviewed snp yeast by michaelbarton on 2008-06-25 18:03:04 as along with 1 person and 1 group stajich Mycology
	Stoichiometric interpretation of Escherichia coli glucose catabolism under various oxygenation rates. [My Copy] Applied Environmental Microbiology, Vol. 59, No. 8. (August 1993), pp. 2465-2473. by A. Varma, B. W. Boesch, B. O. Palsson posted to shadow-prices reviewed metabolism mdb-thesis mdb-manuscript-1 glycolysis genome-scale-model flux-balance-analysis energy-production ecoli diauxic-shift cost-minimisation by michaelbarton on 2008-06-17 11:19:02 as along with 1 person madhadron
	Evolutionarily conserved optimization of amino acid biosynthesis. [My Copy] J Mol Evol, Vol. 65, No. 2. (August 2007), pp. 186-196. by E. O. Perlstein, B. L. de Bivort, S. Kunes, S. L. Schreiber posted to yeast reviewed fitness ecoli cost-minimisation amino-acid-usage by michaelbarton on 2008-06-17 10:21:40 as
	The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli [My Copy] Nature Biotechnology, Vol. 26, No. 6. (06 June 2008), pp. 659-667. by Adam M. Feist, Bernhard O. Palsson posted to ecoli evolution evolutionary-systems-biology genome-scale-model genomics mdb-thesis metabolic-engineering metabolomics network-analysis phenotype-prediction reviewed strain-design systems-biology by michaelbarton on 2008-06-14 10:35:25 as along with 6 people and 2 groups eline_koers schwartzjmc lflorez fishtank ptrobajo AlexanderPico BergmanLab TNT
	A genome-wide survey of changes in protein evolutionary rates across four closely related species of Saccharomyces sensu stricto group [My Copy] BMC Evolutionary Biology, Vol. 7 (29 January 2007), 9. by Yoshihiro Kawahara, Tadashi Imanishi posted to yeast synonymous-substitutions reviewed non-synonymous-substitutions multiple-sequence-alignment genomics gene-expression gene-duplication functional-constaint evolutionary-rate evolution amino-acid-substitution by michaelbarton on 2008-04-29 11:55:34 as
	Functional genomic analysis of the rates of protein evolution. [My Copy] Proceedings of the National Academy of Sciences, Vol. 102, No. 15. (12 April 2005), pp. 5483-5488. by D. P. Wall, A. E. Hirsh, H. B. Fraser, et al.J. Kumm, G. Giaever, M. B. Eisen, M. W. Feldman posted to yeast synonymous-substitutions reviewed non-synonymous-substitutions noise mdb-thesis mdb-manuscript-1 gene-knockout gene-expression gene-dispensability evolutionary-rate evolution amino-acid-substitution by michaelbarton on 2008-04-22 12:32:12 as along with 7 people and 1 group mgomes phoenixzxl bjorns balajis opheliav penka RamuAnandakrishnan Nie
	Global analysis of protein expression in yeast [My Copy] Nature, Vol. 425, No. 6959. (16 October 2003), pp. 737-741. by Sina Ghaemmaghami, Won-Ki Huh, Kiowa Bower, et al.Russell W. Howson, Archana Belle, Noah Dephoure, Erin K. O'Shea, Jonathan S. Weissman posted to yeast translation tap-tag reviewed proteins mdb-thesis mdb-manuscript-1 gene-expression codon-usage by michaelbarton on 2008-04-01 16:51:51 as along with 14 people viren4388 phebden jporternj nzm MarcJungbluth rebeccahainess nirfriedman nm raiyar nicoleq roys faion dylanwalker chasmand
	Genome-Wide Analysis of Nucleotide-Level Variation in Commonly Used Saccharomyces cerevisiae Strains. [My Copy] PLoS ONE, Vol. 2 (2007) by J. Schacherer, D. M. Ruderfer, D. Gresham, K. Dolinski, D. Botstein, L. Kruglyak posted to yeast tiling-array snp reviewed mutation insertion-deletion genetic-variation by michaelbarton on 2008-04-01 16:27:55 as along with 2 people and 1 group stajich dmc Durbin group
	Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae [My Copy] Journal of Molecular Biology, Vol. 268, No. 2. (2 May 1997), pp. 322-330. by Riccardo Percudani, Angelo Pavesi, Simone Ottonello posted to yeast trna-copy trna translational-selection translational-accuracy reviewed mdb-manuscript-1 genetic-code gene-expression gene-characteristics codon-usage amino-acid-usage by michaelbarton on 2008-03-31 11:38:04 as
	A universal trend of amino acid gain and loss in protein evolution [My Copy] Nature, Vol. aop, No. current. (19 January 2005) by I. King Jordan, Fyodor A. Kondrashov, Ivan A. Adzhubei, et al.Yuri I. Wolf, Eugene V. Koonin, Alexey S. Kondrashov, Shamil Sunyaev posted to amino-acid-substitution amino-acid-usage genetic-code reviewed by michaelbarton on 2008-03-20 11:19:47 as along with 4 people kirasato karbak gisle nagendranow
	Protein evolution: Causes of trends in amino-acid gain and loss [My Copy] Nature, Vol. 442, No. 7105. (23 August 2006), pp. E11-E12. by Laurence D. Hurst, Edward J. Feil, Eduardo P. C. Rocha posted to reviewed purifying-selection mutation evolution cost-minimisation amino-acid-usage amino-acid-substitution by michaelbarton on 2008-03-20 11:17:42 as along with 2 people kirasato bjorns
	Compositional variation in bacterial genes and proteins with potential expression level [My Copy] FEBS Letters, Vol. 579, No. 23. (26 September 2005), pp. 5205-5210. by Sabyasachi Das, Subhagata Ghosh, Archana Pan, Chitra Dutta posted to reviewed gene-expression gene-characteristics gc-content evolution eubacteria ecoli cost-minimisation codon-usage amino-acid-usage by michaelbarton on 2008-03-17 09:39:08 as along with 1 person Saby2000
	Quantification of protein half-lives in the budding yeast proteome [My Copy] PNAS, Vol. 103, No. 35. (29 August 2006), pp. 13004-13009. by Archana Belle, Amos Tanay, Ledion Bitincka, Ron Shamir, Erin K. O'Shea posted to yeast translation reviewed protein-degradation gene-expression-degradation gene-expression by michaelbarton on 2008-03-11 11:47:27 as along with 6 people stefanorb reidw balabu lshaw nicoleq roys
	Translational selection and yeast proteome evolution. [My Copy] Genetics, Vol. 164, No. 4. (August 2003), pp. 1291-1303. by H. Akashi posted to yeast trna-copy trna translational-selection reviewed mdb-thesis mdb-manuscript-1 gene-length gene-expression gene-characteristics codon-usage amino-acid-usage by michaelbarton on 2008-03-10 11:52:39 as along with 2 people and 1 group bjorns penka Nie
	Analysis of the yeast transcriptome with structural and functional categories: characterizing highly expressed proteins [My Copy] Nucl. Acids Res., Vol. 28, No. 6. (15 March 2000), pp. 1481-1488. by Ronald Jansen, Mark Gerstein posted to yeast reviewed protein-structure gene-length gene-expression gene-characteristics cost-minimisation amino-acid-usage by michaelbarton on 2008-03-10 11:02:33 as

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mdb-thesis	112
yeast	65
amino-acid-usage	50
mdb-manuscript-1	46
gene-expression	38
flux-balance-analysis	34
genome-scale-model	34
evolutionary-rate	29
evolution	25
cost-minimisation	24
codon-usage	23
reviewed	21
ecoli	20
gene-dispensability	20
metabolism	20
srs	17
systems-biology	15
amino-acid-substitution	13
environment	13
gene-characteristics	10
metabolic-control-analysis	10
metagenomics	10
nutrient-limitation	10
translation	10
diauxic-shift	8
genomics	8
gc-content	7
gene-duplication	7
transcription	7
evolutionary-systems-biology	6
phylogenomics	6
srs-resequencing	6
statistics	6
amino-acid-cost	5
atomic-content	5
comparative-genomics	5
fitness	5
gene-length	5
genome-annotation	5
genome-sequencing	5
glycolysis	5
haploinsufficiency	5
mutation	5
prote-evolution	5
srs-assembly	5
translational-selection	5
database	4
energy-production	4
extremophile	4
insertion-deletion	4
proteins	4
sequence-alignment	4
snp	4
thermophile	4
trna	4
cost-benefit-analysis	3
enzyme	3
gene-expression-degradation	3
metabolomics	3
pharmacology	3
phylogeny	3
population-genetics	3
protein-structure	3
sequence-homology	3
trna-copy	3
alignment-concatenation	2
classification	2
clustering	2
data-mining	2
drosophila	2
gene-knockout	2
genetic-code	2
genetic-variation	2
gene-transfer	2
genome-scale-model-construction	2
kinetic-modelling	2
model-fitting	2
moma	2
mrna-degradation	2
multiple-sequence-alignment	2
noise	2
non-synonymous-substitutions	2
proteome	2
regulation	2
software	2
srs-challenges	2
standards	2
suboptimal-solution	2
synonymous-substitutions	2
transcription-factors	2
transcriptome	2
translational-accuracy	2
akaike-information-criterion	1
alignment	1
bibliometrics	1
binding-sites	1
bioruby	1
bloggging	1
blogging	1
buchnera	1
chemicals	1
citation-analysis	1
collaboration	1
density	1
drug	1
endosymbiotic	1
eubacteria	1
functional-constaint	1
functional-constraint	1
gene-prediction	1
genome-annoation	1
genome-duplication	1
hiv	1
insertions-deletions	1
instance-rate-matrix	1
isoenzymes	1
lac-operon	1
lactose	1
linear-optimisation	1
log-likelihood	1
metabolic_efficiency	1
metabolic-engineering	1
metabolite	1
metabolome	1
microarray	1
modelling	1
mrna-stability	1
mrn-degradation	1
multivariate	1
network-analysis	1
non-coding-dna	1
normalisation	1
ontology	1
open-science	1
page-rank	1
paralogs	1
paramter-scanning	1
phenotype-prediction	1
promoters	1
protein-atomic-content	1
protein-degradation	1
protein-production	1
purifying-selection	1
regression	1
research	1
review	1
ribosomal	1
ribosomal-density	1
rna-structure	1
room	1
ruby	1
sequence	1
shadow-prices	1
solexa	1
species-tree	1
srs-deep	1
srs-simulation	1
strain-design	1
structural-constraint	1
sulfur	1
symbiosis	1
tap-tag	1
thermophiles	1
tiling-array	1
trace-metals	1
transcription-network	1
transposable-elements	1
virus	1

michaelbarton's reviewed [21 articles] Export

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