michaelbarton's systems-biology [15 articles] Export

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	The conservation and evolutionary modularity of metabolism [My Copy] Genome Biology, Vol. 10, No. 6. (12 June 2009), R63. by Jose P. Alvarez, Chris Sanford, John Parkinson posted to systems-biology by michaelbarton on 2009-06-26 09:18:46 as along with 9 people and 1 group venancio carlk adampah bdessailly barriot biomcgary Winzer tomhebbron grahamc Orengo Group Journal Picks
	Glucose regulates transcription in yeast through a network of signaling pathways [My Copy] Mol Syst Biol, Vol. 5 (17 February 2009) by Shadia Zaman, Soyeon I. Lippman, Lisa Schneper, Noam Slonim, James R. Broach posted to diauxic-shift systems-biology transcription yeast by michaelbarton on 2009-04-17 10:12:35 as along with 4 people zwang biomcgary renatomilani arne
	Why is the correlation between gene importance and gene evolutionary rate so weak? [My Copy] PLoS Genetics, Vol. 5, No. 1. (January 2009), e1000329. by Zhi Wang, Jianzhi Zhang posted to evolutionary-rate evolutionary-systems-biology gene-dispensability gene-knockout mdb-thesis systems-biology by michaelbarton on 2009-02-03 16:05:50 as along with 11 people and 2 groups daveGerrard rdiaz renatomilani dpollard pkonings katholt druvus Zephyrus djkt trfield cabbagesofdoom RockmanLab R.E.A.D
	Computational approaches to the topology, stability and dynamics of metabolic networks. [My Copy] Phytochemistry, Vol. 68, No. 16-18. (p 2007), pp. 2139-2151. by R. Steuer posted to flux-balance-analysis genome-scale-model mdb-thesis systems-biology by michaelbarton on 2009-02-03 15:34:02 as
	Minimum information requested in the annotation of biochemical models (MIRIAM) [My Copy] Nature Biotechnology, Vol. 23, No. 12. (06 December 2005), pp. 1509-1515. by Nicolas L. Novere, Andrew Finney, Michael Hucka, et al.Upinder S. Bhalla, Fabien Campagne, Julio Collado-Vides, Edmund J. Crampin, Matt Halstead, Edda Klipp, Pedro Mendes, Poul Nielsen, Herbert Sauro, Bruce Shapiro, Jacky L. Snoep, Hugh D. Spence, Barry L. Wanner posted to mdb-thesis modelling standards systems-biology by michaelbarton on 2009-02-03 15:25:35 as along with 15 people and 2 groups perkeo irenas jmuhlich bertelsen moonhouse schwartzjmc tjtaylor Vincent_Rouilly allysonlister subhacom dullhunk dagmar lenov pmendes leilaperie dIEMoSIRIS compneur
	High-order combination effects and biological robustness [My Copy] Molecular Systems Biology, Vol. 4 (2008), 215. by Joseph Lehar, Andrew Krueger, Grant Zimmermann, Alexis Borisy posted to mdb-thesis metabolic-control-analysis pharmacology systems-biology by michaelbarton on 2009-02-03 09:39:57 as along with 11 people niallhaslam colmryan ipark-kaist frohike tomhebbron guhjy tmmurali pengchy bootsy Ema jjray
	Network pharmacology: the next paradigm in drug discovery [My Copy] Nature Chemical Biology, Vol. 4, No. 11. (November 2008), pp. 682-690. by Andrew L. Hopkins posted to mdb-thesis metabolic-control-analysis pharmacology systems-biology by michaelbarton on 2009-02-03 09:38:34 as along with 7 people flbarroso sg45653 richardbickerton Yanno bicko ramensky jerome
	Metabolic control analysis: a survey of its theoretical and experimental development. [My Copy] The Biochemical Journal, Vol. 286 ( Pt 2) (1 September 1992), pp. 313-330. by D. A. Fell posted to mdb-thesis metabolic-control-analysis systems-biology by michaelbarton on 2009-02-03 09:33:55 as along with 2 people superpyrin csanford
	Three factors underlying incorrect in silico predictions of essential metabolic genes [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Scott Becker, Bernhard O. Palsson posted to fitness flux-balance-analysis gene-dispensability genome-scale-model mdb-thesis systems-biology by michaelbarton on 2009-01-29 18:41:09 as along with 1 person renatomilani
	Schemes of flux control in a model of Saccharomyces cerevisiae glycolysis. [My Copy] Eur J Biochem, Vol. 269, No. 16. (August 2002), pp. 3894-3904. by L. Pritchard, D. B. Kell posted to energy-production glycolysis kinetic-modelling metabolic-control-analysis metabolism metabolomics model-fitting paramter-scanning reviewed systems-biology yeast by michaelbarton on 2009-01-15 16:51:13 as along with 6 people and 2 groups pmendes schwartzjmc peterli dbk LeightonP dullhunk streptomyces dbk-lab
	An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). [My Copy] Genome Biology, Vol. 4, No. 9. (2003), R54. by Jennifer L. Reed, Thuy D. Vo, Christophe H. Schilling, Bernhard O. Palsson posted to systems-biology metabolism mdb-thesis mdb-manuscript-1 genome-scale-model flux-balance-analysis ecoli by michaelbarton on 2008-12-19 18:01:13 as along with 5 people and 2 groups schwartzjmc csanford cate bjorns JeremyZucker biospec MetabolicModeling
	Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network. [My Copy] Proceedings of the National Academy of Sciences, Vol. 100, No. 23. (11 November 2003), pp. 13134-13139. by I. Famili, J. Förster, J. Nielsen, B. O. Palsson posted to yeast systems-biology metabolism mdb-thesis mdb-manuscript-1 genome-scale-model flux-balance-analysis diauxic-shift by michaelbarton on 2008-12-12 15:01:29 as along with 2 people JeremyZucker koller
	Genome-scale analysis of the uses of the Escherichia coli genome: model-driven analysis of heterogeneous data sets. [My Copy] Journal of bacteriology, Vol. 185, No. 21. (November 2003), pp. 6392-6399. by T. E. Allen, M. J. Herrgård, M. Liu, et al.Y. Qiu, J. D. Glasner, F. R. Blattner, Palsson posted to translation transcription systems-biology ribosomal reviewed promoters nutrient-limitation mrn-degradation metabolism mdb-thesis mdb-manuscript-1 gene-length gene-expression-degradation gene-expression flux-balance-analysis energy-production ecoli density cost-benefit-analysis amino-acid-usage by michaelbarton on 2008-10-17 14:55:43 as
	Is transcriptional regulation of metabolic pathways an optimal strategy for fitness? [My Copy] PLoS ONE, Vol. 2, No. 9. (2007) by C. Troein, D. Ahrén, M. Krogh, C. Peterson posted to environment fitness gene-expression systems-biology by michaelbarton on 2008-07-04 16:57:02 as
	The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli [My Copy] Nature Biotechnology, Vol. 26, No. 6. (06 June 2008), pp. 659-667. by Adam M. Feist, Bernhard O. Palsson posted to ecoli evolution evolutionary-systems-biology genome-scale-model genomics mdb-thesis metabolic-engineering metabolomics network-analysis phenotype-prediction reviewed strain-design systems-biology by michaelbarton on 2008-06-14 10:35:25 as along with 6 people and 2 groups eline_koers schwartzjmc lflorez fishtank ptrobajo AlexanderPico BergmanLab TNT

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mdb-thesis	112
yeast	65
amino-acid-usage	50
mdb-manuscript-1	46
gene-expression	38
flux-balance-analysis	34
genome-scale-model	34
evolutionary-rate	29
evolution	25
cost-minimisation	24
codon-usage	23
reviewed	21
ecoli	20
gene-dispensability	20
metabolism	20
srs	17
systems-biology	15
amino-acid-substitution	13
environment	13
gene-characteristics	10
metabolic-control-analysis	10
metagenomics	10
nutrient-limitation	10
translation	10
diauxic-shift	8
genomics	8
gc-content	7
gene-duplication	7
transcription	7
evolutionary-systems-biology	6
phylogenomics	6
srs-resequencing	6
statistics	6
amino-acid-cost	5
atomic-content	5
comparative-genomics	5
fitness	5
gene-length	5
genome-annotation	5
genome-sequencing	5
glycolysis	5
haploinsufficiency	5
mutation	5
prote-evolution	5
srs-assembly	5
translational-selection	5
database	4
energy-production	4
extremophile	4
insertion-deletion	4
proteins	4
sequence-alignment	4
snp	4
thermophile	4
trna	4
cost-benefit-analysis	3
enzyme	3
gene-expression-degradation	3
metabolomics	3
pharmacology	3
phylogeny	3
population-genetics	3
protein-structure	3
sequence-homology	3
trna-copy	3
alignment-concatenation	2
classification	2
clustering	2
data-mining	2
drosophila	2
gene-knockout	2
genetic-code	2
genetic-variation	2
gene-transfer	2
genome-scale-model-construction	2
kinetic-modelling	2
model-fitting	2
moma	2
mrna-degradation	2
multiple-sequence-alignment	2
noise	2
non-synonymous-substitutions	2
proteome	2
regulation	2
software	2
srs-challenges	2
standards	2
suboptimal-solution	2
synonymous-substitutions	2
transcription-factors	2
transcriptome	2
translational-accuracy	2
akaike-information-criterion	1
alignment	1
bibliometrics	1
binding-sites	1
bioruby	1
bloggging	1
blogging	1
buchnera	1
chemicals	1
citation-analysis	1
collaboration	1
density	1
drug	1
endosymbiotic	1
eubacteria	1
functional-constaint	1
functional-constraint	1
gene-prediction	1
genome-annoation	1
genome-duplication	1
hiv	1
insertions-deletions	1
instance-rate-matrix	1
isoenzymes	1
lac-operon	1
lactose	1
linear-optimisation	1
log-likelihood	1
metabolic_efficiency	1
metabolic-engineering	1
metabolite	1
metabolome	1
microarray	1
modelling	1
mrna-stability	1
mrn-degradation	1
multivariate	1
network-analysis	1
non-coding-dna	1
normalisation	1
ontology	1
open-science	1
page-rank	1
paralogs	1
paramter-scanning	1
phenotype-prediction	1
promoters	1
protein-atomic-content	1
protein-degradation	1
protein-production	1
purifying-selection	1
regression	1
research	1
review	1
ribosomal	1
ribosomal-density	1
rna-structure	1
room	1
ruby	1
sequence	1
shadow-prices	1
solexa	1
species-tree	1
srs-deep	1
srs-simulation	1
strain-design	1
structural-constraint	1
sulfur	1
symbiosis	1
tap-tag	1
thermophiles	1
tiling-array	1
trace-metals	1
transcription-network	1
transposable-elements	1
virus	1

michaelbarton's systems-biology [15 articles] Export

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