michaelbarton's yeast [65 articles] Export

Recent papers added to michaelbarton's library classified by the tag yeast. You can also see everyone's yeast.

	Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae. [My Copy] Yeast, Vol. 16, No. 12. (15 September 2000), pp. 1131-1145. by A. Coghlan, K. H. Wolfe posted to codon-usage mdb-thesis yeast by michaelbarton on 2009-07-29 11:35:42 as along with 1 person bjorns
	Revisiting the codon adaptation index from a whole-genome perspective: analyzing the relationship between gene expression and codon occurrence in yeast using a variety of models. [My Copy] Nucleic Acids Research, Vol. 31, No. 8. (15 April 2003), pp. 2242-2251. by R. Jansen, H. J. Bussemaker, M. Gerstein posted to yeast mdb-thesis mdb-manuscript-1 gene-expression codon-usage by michaelbarton on 2009-07-19 19:35:03 as along with 1 person nedwards
	A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations. [My Copy] Nature Biotechnology, Vol. 19, No. 1. (January 2001), pp. 45-50. by L. M. Raamsdonk, B. Teusink, D. Broadhurst, et al.N. Zhang, A. Hayes, M. C. Walsh, J. A. Berden, K. M. Brindle, D. B. Kell, J. J. Rowland, H. V. Westerhoff, K. van Dam, S. G. Oliver posted to gene-dispensability mdb-thesis yeast by michaelbarton on 2009-07-06 16:35:13 as along with 8 people and 3 groups Garth_9145 czeller dbk irenas dullhunk raiyar katerinakal JeremyZucker streptomyces dbk-lab steinmetzlab
	Co-regulation of metabolic genes is better explained by flux coupling than by network distance [My Copy] PLoS Computational Biology, Vol. 4, No. 1. (25 January 2008), e26. by Richard A. Notebaart, Bas Teusink, Roland J. Siezen, Balázs Papp posted to ecoli flux-balance-analysis genome-scale-model mdb-thesis metabolism yeast by michaelbarton on 2009-07-06 16:28:35 as along with 4 people yujiangwang arne maralena jjray
	Yeast and drug discovery. [My Copy] Functional & Integrative Genomics, Vol. 2, No. 4-5. (September 2002), pp. 199-211. by T. R. Hughes posted to mdb-thesis yeast by michaelbarton on 2009-07-03 12:14:10 as along with 1 person Dualsystems
	Population genomics of domestic and wild yeasts. [My Copy] Nature, Vol. 458, No. 7236. (19 March 2009), pp. 337-341. by G. Liti, D. M. Carter, A. M. Moses, et al.J. Warringer, L. Parts, S. A. James, R. P. Davey, I. N. Roberts, A. Burt, V. Koufopanou, I. J. Tsai, C. M. Bergman, D. Bensasson, M. J. O'Kelly, A. van Oudenaarden, D. B. Barton, E. Bailes, A. N. Nguyen, M. Jones, M. A. Quail, I. Goodhead, S. Sims, F. Smith, A. Blomberg, R. Durbin, E. J. Louis posted to mdb-thesis population-genetics srs srs-resequencing yeast by michaelbarton on 2009-07-02 14:19:26 as along with 12 people and 3 groups aprasad emptyhb benjaminsb dpollard fungal absterga anphony druvus stajich jasontsai skoch3 dullhunk RockmanLab Mycology Koch_Lab
	Life with 6000 Genes [My Copy] Science, Vol. 274, No. 5287. (25 October 1996), pp. 546-567. by A. Goffeau, B. G. Barrell, H. Bussey, et al.R. W. Davis, B. Dujon, H. Feldmann, F. Galibert, J. D. Hoheisel, C. Jacq, M. Johnston, E. J. Louis, H. W. Mewes, Y. Murakami, P. Philippsen, H. Tettelin, S. G. Oliver posted to genome-sequencing mdb-thesis yeast by michaelbarton on 2009-07-02 14:13:43 as along with 10 people tomd66 timflutre nzm sdinka Cortel rebeccahainess arcticrasta treangen yulian2108 farhat
	Increased glycolytic flux as an outcome of whole-genome duplication in yeast. [My Copy] Molecular systems biology, Vol. 3 (2007) by G. C. Conant, K. H. Wolfe posted to gene-duplication genome-duplication glycolysis yeast by michaelbarton on 2009-06-30 11:24:47 as along with 1 person milanovic
	Exposing the fitness contribution of duplicated genes. [My Copy] Nature genetics, Vol. 40, No. 5. (May 2008), pp. 676-681. by A. DeLuna, K. Vetsigian, N. Shoresh, et al.M. Hegreness, M. Colón-González, S. Chao, R. Kishony posted to gene-dispensability yeast by michaelbarton on 2009-06-30 11:22:52 as along with 4 people and 1 group dakelley azazello djkt caseybrown WeitzGroup
	A comprehensive strategy enabling high-resolution functional analysis of the yeast genome [My Copy] Nat Meth, Vol. 5, No. 8. (11 August 2008), pp. 711-718. by David K. Breslow, Dale M. Cameron, Sean R. Collins, et al.Maya Schuldiner, Jacob Stewart-Ornstein, Heather W. Newman, Sigurd Braun, Hiten D. Madhani, Nevan J. Krogan, Jonathan S. Weissman posted to gene-dispensability yeast by michaelbarton on 2009-06-30 11:17:33 as along with 5 people jbhiatt lbnc ajbattle gruberjd guhjy
	Adaptive prediction of environmental changes by microorganisms [My Copy] Nature, Vol. 460, No. 7252. (17 June 2009), pp. 220-224. by Amir Mitchell, Gal H. Romano, Bella Groisman, et al.Avihu Yona, Erez Dekel, Martin Kupiec, Orna Dahan, Yitzhak Pilpel posted to ecoli environment evolution yeast by michaelbarton on 2009-06-26 09:52:02 as along with 8 people and 1 group yyfwuhan kinestetika biomcgary sriesenfeld timotay izuleta djkt jjray iSEEM
	Gene Ontology annotations at SGD: new data sources and annotation methods. [My Copy] Nucleic Acids Research, Vol. 36, No. Database. (23 December 2008), pp. D577-D581. by E. L. Hong, R. Balakrishnan, Q. Dong, et al.K. R. Christie, J. Park, G. Binkley, M. C. Costanzo, S. S. Dwight, S. R. Engel, D. G. Fisk, J. E. Hirschman, B. C. Hitz, C. J. Krieger, M. S. Livstone, S. R. Miyasato, R. S. Nash, R. Oughtred, M. S. Skrzypek, S. Weng, E. D. Wong, K. K. Zhu, K. Dolinski, D. Botstein, J. M. Cherry posted to yeast mdb-thesis mdb-manuscript-1 database by michaelbarton on 2009-06-24 15:52:35 as along with 5 people fgibson taroleo dullhunk hplatero carlk
	Functional profiling of the Saccharomyces cerevisiae genome. [My Copy] Nature, Vol. 418, No. 6896. (25 July 2002), pp. 387-391. by G. Giaever, A. M. Chu, L. Ni, et al.C. Connelly, L. Riles, S. Véronneau, S. Dow, A. Lucau-Danila, K. Anderson, B. André, A. P. Arkin, A. Astromoff, M. El-Bakkoury, R. Bangham, R. Benito, S. Brachat, S. Campanaro, M. Curtiss, K. Davis, A. Deutschbauer, K. D. Entian, P. Flaherty, F. Foury, D. J. Garfinkel, M. Gerstein, D. Gotte, U. Güldener, J. H. Hegemann, S. Hempel, Z. Herman, D. F. Jaramillo, D. E. Kelly, S. L. Kelly, P. Kötter, D. Labonte, D. C. Lamb, N. Lan, H. Liang, H. Liao, L. Liu, C. Luo, M. Lussier, R. Mao, P. Menard, S. L. Ooi, J. L. Revuelta, C. J. Roberts, M. Rose, P. Ross-Macdonald, B. Scherens, G. Schimmack, B. Shafer, D. D. Shoemaker, S. Sookhai-Mahadeo, R. K. Storms, J. N. Strathern, G. Valle, M. Voet, G. Volckaert, C. Y. Wang, T. R. Ward, J. Wilhelmy, E. A. Winzeler, Y. Yang, G. Yen, E. Youngman, K. Yu, H. Bussey, J. D. Boeke, M. Snyder, P. Philippsen, R. W. Davis, M. Johnston posted to gene-dispensability mdb-thesis yeast by michaelbarton on 2009-06-23 14:29:09 as along with 16 people and 3 groups myzhang thegoose2 mdstobbe tharris pcahan1 lfriedl balajis rebeccahainess nirfriedman koller raiyar cjeans jiny hplatero chasmand dylanwalker C. elegans / WormBase kdl steinmetzlab
	Genomic profiling of drug sensitivities via induced haploinsufficiency [My Copy] Nature Genetics, Vol. 21, No. 3. (March 1999), pp. 278-283. by G. Giaever, D. D. Shoemaker, T. W. Jones, et al.H. Liang, E. A. Winzeler, A. Astromoff, R. W. Davis posted to haploinsufficiency mdb-thesis yeast by michaelbarton on 2009-06-10 16:26:52 as along with 1 person and 1 group raiyar steinmetzlab
	Co-evolutionary networks of genes and cellular processes across fungal species [My Copy] Genome Biology, Vol. 10, No. 5. (2009), R48. by Tamir Tuller, Martin Kupiec, Eytan Ruppin posted to evolutionary-rate yeast by michaelbarton on 2009-05-05 14:30:06 as along with 5 people kiekyon roys inesdesantiago grahamc dokky
	Glucose regulates transcription in yeast through a network of signaling pathways [My Copy] Mol Syst Biol, Vol. 5 (17 February 2009) by Shadia Zaman, Soyeon I. Lippman, Lisa Schneper, Noam Slonim, James R. Broach posted to diauxic-shift systems-biology transcription yeast by michaelbarton on 2009-04-17 10:12:35 as along with 4 people zwang biomcgary renatomilani arne
	Connecting extracellular metabolomic measurements to intracellular flux states in yeast [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 37. by Monica Mo, Bernhard Palsson, Markus Herrgard posted to flux-balance-analysis yeast by michaelbarton on 2009-04-17 10:08:36 as along with 1 person schwartzjmc
	Evolutionary rates and centrality in the yeast gene regulatory network [My Copy] Genome Biology, Vol. 10 (09 April 2009), R35. by Richard Jovelin, Patrick C. Phillips posted to evolutionary-rate transcription-factors yeast by michaelbarton on 2009-04-17 10:02:47 as along with 2 people djkt bpcusack
	The Tree versus the Forest: The Fungal Tree of Life and the Topological Diversity within the Yeast Phylome [My Copy] PLoS ONE, Vol. 4, No. 2. (3 February 2009), e4357. by Marina Marcet-Houben, Toni Gabaldón posted to alignment-concatenation evolutionary-rate phylogenomics phylogeny species-tree yeast by michaelbarton on 2009-03-08 12:38:19 as along with 2 people and 1 group kiekyon stajich Mycology
	PhylomeDB: a database for genome-wide collections of gene phylogenies [My Copy] Nucl. Acids Res., Vol. 36, No. Database issue. (25 October 2007), gkm899. by Jaime Huerta-Cepas, Anibal Bueno, Joaquin Dopazo, Toni Gabaldon posted to evolutionary-rate phylogenomics phylogeny yeast by michaelbarton on 2009-03-08 12:37:55 as along with 3 people aktas treangen gjuggler
	Finding functional features in Saccharomyces genomes by phylogenetic footprinting. [My Copy] Science, Vol. 301, No. 5629. (4 July 2003), pp. 71-76. by P. Cliften, P. Sudarsanam, A. Desikan, et al.L. Fulton, B. Fulton, J. Majors, R. Waterston, B. A. Cohen, M. Johnston posted to comparative-genomics genomics mdb-thesis yeast by michaelbarton on 2009-03-04 18:13:29 as along with 6 people and 1 group wowalz evaf chad_davis dquest Eonwe cisevol cis-regulatory-evolution
	Sequencing and comparison of yeast species to identify genes and regulatory elements. [My Copy] Nature, Vol. 423, No. 6937. (15 May 2003), pp. 241-254. by Manolis Kellis, Nick Patterson, Matthew Endrizzi, Bruce Birren, Eric S. Lander posted to comparative-genomics evolution genomics mdb-thesis yeast by michaelbarton on 2009-03-04 18:09:52 as along with 10 people and 4 groups roys evaf RMGraze balajis opheliav dchughes dquest franklin azazello cisevol G4ID Genetics-of-Gambling MBLAB cis-regulatory-evolution
	Exploration of essential gene functions via titratable promoter alleles. [My Copy] Cell, Vol. 118, No. 1. (9 July 2004), pp. 31-44. by S. Mnaimneh, A. P. Davierwala, J. Haynes, et al.J. Moffat, W. T. Peng, W. Zhang, X. Yang, J. Pootoolal, G. Chua, A. Lopez, M. Trochesset, D. Morse, N. J. Krogan, S. L. Hiley, Z. Li, Q. Morris, J. Grigull, N. Mitsakakis, C. J. Roberts, J. F. Greenblatt, C. Boone, C. A. Kaiser, B. J. Andrews, T. R. Hughes posted to haploinsufficiency mdb-thesis yeast by michaelbarton on 2009-02-03 15:48:10 as along with 4 people and 2 groups raiyar irenas chasmand nickluscombe dbk-lab EBI-regulation
	A global view of pleiotropy and phenotypically derived gene function in yeast [My Copy] Molecular Systems Biology, Vol. 1, No. 1. (29 March 2005), pp. msb4100004-E1-msb4100004-E11. by Aimée M. Dudley, Daniel M. Janse, Amos Tanay, Ron Shamir, George M. Church posted to mdb-thesis yeast by michaelbarton on 2009-02-03 15:46:02 as along with 9 people nicholasflann dbensasson chihchun_chen balajis balicea i41m nirfriedman koller jiny
	Mechanisms of Haploinsufficiency Revealed by Genome-Wide Profiling in Yeast [My Copy] Genetics, Vol. 169, No. 4. (1 April 2005), pp. 1915-1925. by Adam M. Deutschbauer, Daniel F. Jaramillo, Michael Proctor, et al.Jochen Kumm, Maureen E. Hillenmeyer, Ronald W. Davis, Corey Nislow, Guri Giaever posted to haploinsufficiency mdb-thesis yeast by michaelbarton on 2009-02-03 15:34:37 as along with 3 people yagyav madhadron chasmand
	Genetic and physical maps of Saccharomyces cerevisiae. [My Copy] Nature, Vol. 387, No. 6632 Suppl. (29 May 1997), pp. 67-73. by J. M. Cherry, C. Ball, S. Weng, et al.G. Juvik, R. Schmidt, C. Adler, B. Dunn, S. Dwight, L. Riles, R. K. Mortimer, D. Botstein posted to database mdb-thesis yeast by michaelbarton on 2009-02-03 10:29:11 as along with 2 people dragonrez gurkanbebek
	Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast. [My Copy] Nature, Vol. 429, No. 6992. (10 June 2004), pp. 661-664. by B. Papp, C. Pál, L. D. Hurst posted to flux-balance-analysis gene-dispensability genome-scale-model mdb-thesis yeast by michaelbarton on 2009-01-29 20:23:44 as along with 6 people tmmurali bjorns edwardmorrissey stefanoallesina hryk Takayuki
	Comparative proteome analysis of Saccharomyces cerevisiae grown in chemostat cultures limited for glucose or ethanol. [My Copy] Molecular & cellular proteomics : MCP, Vol. 4, No. 1. (January 2005), pp. 1-11. by A. Kolkman, M. M. Olsthoorn, C. E. Heeremans, A. J. Heck, M. Slijper posted to diauxic-shift gene-expression mdb-thesis transcription translation yeast by michaelbarton on 2009-01-29 20:07:41 as
	Proteome analysis of yeast response to various nutrient limitations [My Copy] Mol Syst Biol, Vol. 2 (2006), pp. msb4100069-E1-msb4100069-E16. by Annemieke Kolkman, Pascale Daran-Lapujade, Asier Fullaondo, et al.Maurien M. Olsthoorn, Jack T. Pronk, Monique Slijper, Albert J. Heck posted to diauxic-shift gene-expression mdb-thesis proteome yeast by michaelbarton on 2009-01-29 20:06:41 as along with 4 people and 2 groups Retchless okarsligil pau roys Bioinformatics RNAtransport
	Large-scale evaluation of in silico gene deletions in Saccharomyces cerevisiae. [My Copy] OMICS, Vol. 7, No. 2. (2003), pp. 193-202. by J. Förster, I. Famili, B. O Palsson, J. Nielsen posted to flux-balance-analysis gene-dispensability genome-scale-model mdb-thesis yeast by michaelbarton on 2009-01-29 20:04:43 as along with 1 person and 1 group irenas dbk-lab
	Plasticity of genetic interactions in metabolic networks of yeast [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 7. (13 February 2007), pp. 2307-2312. by Richard Harrison, Balazs Papp, Csaba Pál, Stephen G. Oliver, Daniela Delneri posted to flux-balance-analysis gene-dispensability genome-scale-model mdb-thesis yeast by michaelbarton on 2009-01-29 19:13:52 as along with 4 people schwartzjmc benjaminsb edwardmorrissey jiny
	The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 40. (2 October 2007), pp. 15753-15758. by Pascale Daran-Lapujade, Sergio Rossell, Walter M. van Gulik, et al.Marijke A. Luttik, Marco J. de Groot, Monique Slijper, Albert J. Heck, Jean-Marc Daran, Johannes H. de Winde, Hans V. Westerhoff, Jack T. Pronk, Barbara M. Bakker posted to glycolysis mdb-thesis metabolic-control-analysis regulation yeast by michaelbarton on 2009-01-29 19:09:15 as along with 3 people athleem fishtank westoll
	Flux balance analysis of a genome-scale yeast model constrained by exometabolomic data allows metabolic system identification of genetically different strains. [My Copy] Biotechnol Prog, Vol. 23, No. 2. (r 2007), pp. 320-326. by T. Cakir, C. Efe, D. Dikicioglu, A. Hortaçsu, B. Kirdar, S. G. Oliver posted to diauxic-shift flux-balance-analysis genome-scale-model mdb-thesis yeast by michaelbarton on 2009-01-29 19:03:39 as along with 3 people schwartzjmc cgaugain alexg
	Yeast genome-wide drug-induced haploinsufficiency screen to determine drug mode of action. [My Copy] Proceedings of the National Academy of Sciences, Vol. 101, No. 13. (30 March 2004), pp. 4525-4530. by K. Baetz, L. Mchardy, K. Gable, et al.T. Tarling, D. Rebérioux, J. Bryan, R. J. Andersen, T. Dunn, P. Hieter, M. Roberge posted to drug haploinsufficiency mdb-thesis yeast by michaelbarton on 2009-01-29 18:45:16 as
	Do amino acid biosynthetic costs constrain protein evolution in Saccharomyces cerevisiae? [My Copy] Journal of Molecular Evolution (21 October 2008), pp. 621-630. by Douglas W. Raiford, Esley M. Heizer, Robert V. Miller, Hiroshi Akashi, Michael L. Raymer, Dan E. Krane posted to yeast translation transcription mdb-thesis mdb-manuscript-1 gene-expression evolutionary-rate amino-acid-usage amino-acid-cost by michaelbarton on 2009-01-16 16:49:34 as along with 1 group BergmanLab
	Schemes of flux control in a model of Saccharomyces cerevisiae glycolysis. [My Copy] Eur J Biochem, Vol. 269, No. 16. (August 2002), pp. 3894-3904. by L. Pritchard, D. B. Kell posted to energy-production glycolysis kinetic-modelling metabolic-control-analysis metabolism metabolomics model-fitting paramter-scanning reviewed systems-biology yeast by michaelbarton on 2009-01-15 16:51:13 as along with 6 people and 2 groups pmendes schwartzjmc peterli dbk LeightonP dullhunk streptomyces dbk-lab
	Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs. [My Copy] Journal of Molecular Biology, Vol. 158, No. 4. (15 July 1982), pp. 573-597. by T. Ikemura posted to yeast mdb-thesis mdb-manuscript-1 ecoli codon-usage by michaelbarton on 2008-12-30 13:00:49 as along with 3 people and 1 group danatcaret bjorns cisevol BergmanLab
	Growth control of the eukaryote cell: a systems biology study in yeast. [My Copy] Journal of Biology, Vol. 6, No. 2. (30 April 2007), 4. by Juan I. Castrillo, Leo A. Zeef, David C. Hoyle, et al.Nianshu Zhang, Andrew Hayes, David C. Gardner, Michael J. Cornell, June Petty, Luke Hakes, Leanne Wardleworth, Bharat Rash, Marie Brown, Warwick B. Dunn, David Broadhurst, Kerry O'Donoghue, Svenja S. Hester, Tom P. Dunkley, Sarah R. Hart, Neil Swainston, Peter Li, Simon J. Gaskell, Norman W. Paton, Kathryn S. Lilley, Douglas B. Kell, Stephen G. Oliver posted to yeast translation transcriptome transcription proteome metabolome mdb-thesis mdb-manuscript-1 by michaelbarton on 2008-12-30 12:54:53 as along with 13 people and 1 group cgaugain mqbphcw3 schwartzjmc neilswainston aalibes alexg dullhunk balabu dylan77 cabbagezs Stew roys alanrw EisenLab
	Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network. [My Copy] Proceedings of the National Academy of Sciences, Vol. 100, No. 23. (11 November 2003), pp. 13134-13139. by I. Famili, J. Förster, J. Nielsen, B. O. Palsson posted to yeast systems-biology metabolism mdb-thesis mdb-manuscript-1 genome-scale-model flux-balance-analysis diauxic-shift by michaelbarton on 2008-12-12 15:01:29 as along with 2 people JeremyZucker koller
	Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model. [My Copy] Genome Research, Vol. 14, No. 7. (July 2004), pp. 1298-1309. by N. C. Duarte, M. J. Herrgård, B. O. Palsson posted to yeast mdb-thesis mdb-manuscript-1 genomics genome-scale-model flux-balance-analysis by michaelbarton on 2008-12-11 14:55:10 as along with 3 people RMGraze edwardmorrissey westoll
	From bit to it: How a complex metabolic network transforms information into living matter [My Copy] BMC Systems Biology, Vol. 1, No. 1. (2007) by Andreas Wagner posted to flux-balance-analysis nutrient-limitation yeast by michaelbarton on 2008-10-17 15:07:27 as along with 1 person marcio
	A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology [My Copy] Nature Biotechnology, Vol. 26, No. 10. (09 October 2008), pp. 1155-1160. by Markus J. Herrgard, Neil Swainston, Paul Dobson, et al.Warwick B. Dunn, K. Yalcin Arga, Mikko Arvas, Nils Buthgen, Simon Borger, Roeland Costenoble, Matthias Heinemann, Michael Hucka, Nicolas Le Novere, Peter Li, Wolfram Liebermeister, Monica L. Mo, Ana P. Oliveira, Dina Petranovic, Stephen Pettifer, Evangelos Simeonidis, Kieran Smallbone, Irena Spasie, Dieter Weichart, Roger Brent, David S. Broomhead, Hans V. Westerhoff, Betul Kurdar, Merja Penttila, Edda Klipp, Bernhard O. Palsson, Uwe Sauer, Stephen G. Oliver, Pedro Mendes, Jens Nielsen, Douglas B. Kell posted to flux-balance-analysis genome-scale-model mdb-thesis yeast by michaelbarton on 2008-10-10 14:19:56 as along with 22 people and 2 groups m_j pmendes windman83 jfr raiyar neilswainston irenas JeremyZucker chasmand schwartzjmc pinney pauldobson alaninmcr allysonlister zwang guhjy dbk ptrobajo neils dullhunk pengchy tmmurali MetabolicModeling BergmanLab
	The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing [My Copy] Science, Vol. 320, No. 5881. (6 June 2008), pp. 1344-1349. by Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, et al.Chong Shou, Debasish Raha, Mark Gerstein, Michael Snyder posted to srs transcription yeast by michaelbarton on 2008-09-19 12:26:00 as along with 22 people and 1 group GustavoLacerda debasis dbensasson cfvillalta rdowell poschm jmcq waszak djkt urgi stajich semrich caseybrown gjuggler Retchless biomcgary GeeSharpMinor mapplab faion bpcusack guhjy shurjo Mycology
	The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Intawat Nookaew, Michael Jewett, Asawin Meechai, et al.Chinae Thammarongtham, Kobkul Laoteng, Supapon Cheevadhanarak, Jens Nielsen, Sakarindr Bhumiratana posted to flux-balance-analysis mdb-thesis yeast by michaelbarton on 2008-09-08 10:21:01 as along with 1 person arne
	Integrated analysis of metabolic phenotypes in Saccharomyces cerevisiae. [My Copy] BMC Genomics, Vol. 5, No. 1. (8 September 2004) by N. C. Duarte, Palsson, P. Fu posted to yeast mdb-manuscript-1 genome-scale-model flux-balance-analysis by michaelbarton on 2008-08-29 15:35:01 as along with 1 person and 1 group JeremyZucker MetabolicModeling
	Can yeast glycolysis be understood in terms of in vitro kinetics of the constituent enzymes? Testing biochemistry. [My Copy] European Journal of Biochemistry, Vol. 267, No. 17. (September 2000), pp. 5313-5329. by B. Teusink, J. Passarge, C. A. Reijenga, et al.E. Esgalhado, C. C. van der Weijden, M. Schepper, M. C. Walsh, B. M. Bakker, K. van Dam, H. V. Westerhoff, J. L. Snoep posted to glycolysis kinetic-modelling mdb-thesis metabolism yeast by michaelbarton on 2008-08-29 14:51:06 as along with 6 people dadiamah schwartzjmc peterli dullhunk pmendes marcio
	Population genomics of domestic and wild yeasts : Nature Precedings [My Copy] posted to codon-usage environment evolution gene-expression genetic-variation genomics insertion-deletion mutation population-genetics reviewed snp yeast by michaelbarton on 2008-06-25 18:03:04 as along with 1 person and 1 group stajich Mycology
	Evolutionarily conserved optimization of amino acid biosynthesis. [My Copy] J Mol Evol, Vol. 65, No. 2. (August 2007), pp. 186-196. by E. O. Perlstein, B. L. de Bivort, S. Kunes, S. L. Schreiber posted to yeast reviewed fitness ecoli cost-minimisation amino-acid-usage by michaelbarton on 2008-06-17 10:21:40 as
	A genome-wide survey of changes in protein evolutionary rates across four closely related species of Saccharomyces sensu stricto group [My Copy] BMC Evolutionary Biology, Vol. 7 (29 January 2007), 9. by Yoshihiro Kawahara, Tadashi Imanishi posted to yeast synonymous-substitutions reviewed non-synonymous-substitutions multiple-sequence-alignment genomics gene-expression gene-duplication functional-constaint evolutionary-rate evolution amino-acid-substitution by michaelbarton on 2008-04-29 11:55:34 as
	Homeostatic adjustment and metabolic remodeling in glucose-limited yeast cultures. [My Copy] Mol Biol Cell, Vol. 16, No. 5. (May 2005), pp. 2503-2517. by M. J. Brauer, A. J. Saldanha, K. Dolinski, D. Botstein posted to yeast mdb-manuscript-1 gene-expression diauxic-shift by michaelbarton on 2008-04-22 13:39:59 as along with 1 person dbenn

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mdb-thesis	112
yeast	65
amino-acid-usage	50
mdb-manuscript-1	46
gene-expression	38
flux-balance-analysis	34
genome-scale-model	34
evolutionary-rate	29
evolution	25
cost-minimisation	24
codon-usage	23
reviewed	21
ecoli	20
gene-dispensability	20
metabolism	20
srs	17
systems-biology	15
amino-acid-substitution	13
environment	13
gene-characteristics	10
metabolic-control-analysis	10
metagenomics	10
nutrient-limitation	10
translation	10
diauxic-shift	8
genomics	8
gc-content	7
gene-duplication	7
transcription	7
evolutionary-systems-biology	6
phylogenomics	6
srs-resequencing	6
statistics	6
amino-acid-cost	5
atomic-content	5
comparative-genomics	5
fitness	5
gene-length	5
genome-annotation	5
genome-sequencing	5
glycolysis	5
haploinsufficiency	5
mutation	5
prote-evolution	5
srs-assembly	5
translational-selection	5
database	4
energy-production	4
extremophile	4
insertion-deletion	4
proteins	4
sequence-alignment	4
snp	4
thermophile	4
trna	4
cost-benefit-analysis	3
enzyme	3
gene-expression-degradation	3
metabolomics	3
pharmacology	3
phylogeny	3
population-genetics	3
protein-structure	3
sequence-homology	3
trna-copy	3
alignment-concatenation	2
classification	2
clustering	2
data-mining	2
drosophila	2
gene-knockout	2
genetic-code	2
genetic-variation	2
gene-transfer	2
genome-scale-model-construction	2
kinetic-modelling	2
model-fitting	2
moma	2
mrna-degradation	2
multiple-sequence-alignment	2
noise	2
non-synonymous-substitutions	2
proteome	2
regulation	2
software	2
srs-challenges	2
standards	2
suboptimal-solution	2
synonymous-substitutions	2
transcription-factors	2
transcriptome	2
translational-accuracy	2
akaike-information-criterion	1
alignment	1
bibliometrics	1
binding-sites	1
bioruby	1
bloggging	1
blogging	1
buchnera	1
chemicals	1
citation-analysis	1
collaboration	1
density	1
drug	1
endosymbiotic	1
eubacteria	1
functional-constaint	1
functional-constraint	1
gene-prediction	1
genome-annoation	1
genome-duplication	1
hiv	1
insertions-deletions	1
instance-rate-matrix	1
isoenzymes	1
lac-operon	1
lactose	1
linear-optimisation	1
log-likelihood	1
metabolic_efficiency	1
metabolic-engineering	1
metabolite	1
metabolome	1
microarray	1
modelling	1
mrna-stability	1
mrn-degradation	1
multivariate	1
network-analysis	1
non-coding-dna	1
normalisation	1
ontology	1
open-science	1
page-rank	1
paralogs	1
paramter-scanning	1
phenotype-prediction	1
promoters	1
protein-atomic-content	1
protein-degradation	1
protein-production	1
purifying-selection	1
regression	1
research	1
review	1
ribosomal	1
ribosomal-density	1
rna-structure	1
room	1
ruby	1
sequence	1
shadow-prices	1
solexa	1
species-tree	1
srs-deep	1
srs-simulation	1
strain-design	1
structural-constraint	1
sulfur	1
symbiosis	1
tap-tag	1
thermophiles	1
tiling-array	1
trace-metals	1
transcription-network	1
transposable-elements	1
virus	1

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