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Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

by: Marcel H. Schulz, Daniel R. Zerbino, Martin Vingron, Ewan Birney
Bioinformatics, Vol. 28, No. 8. (15 April 2012), pp. 1086-1092, doi:10.1093/bioinformatics/bts094  Key: citeulike:10385458

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Abstract

Motivation: High-throughput sequencing has made the analysis of new model organisms more affordable. Although assembling a new genome can still be costly and difficult, it is possible to use RNA-seq to sequence mRNA. In the absence of a known genome, it is necessary to assemble these sequences de novo, taking into account possible alternative isoforms and the dynamic range of expression values.


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