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mikaellund's library [129 articles]

Recent papers added to mikaellund's library.
  • The Amber biomolecular simulation programs.
    J Comput Chem, Vol. 26, No. 16. (December 2005), pp. 1668-1688.
    by DA Case, TE Cheatham, T Darden, H Gohlke, R Luo, KM Merz, A Onufriev, C Simmerling, B Wang, RJ Woods
    posted to md computing by mikaellund on 2008-07-30 16:21:11 as ** along with 10 people and 3 groups adilson_mohr IrinaMoreira lna jwm simone ttjoseph xdeupi tovrstra bilab RamuAnandakrishnan Radiation_Damage Stressosome LabCompMed
  • Continuum molecular electrostatics, salt effects and counterion binding. A review of the Poisson-Boltzmann theory and its modifications.
    Biopolymers, Vol. 9999, No. 9999. (2007), NA.
    by Paweł Grochowski, Joanna Trylska
    posted to ion-binding continuum-model by mikaellund on 2008-07-22 22:01:36 as ** along with 2 people and 1 group sobolevnrm softsimu baker-group
  • Specific Ion Binding to Non-Polar Surface Patches of Proteins
    J. Am. Chem. Soc., Vol. Submitted (2008)
    by M Lund, L Vrbka, P Jungwirth
    posted to lund20080c by mikaellund on 2008-07-17 19:25:10 as **
  • An Electrostatic Steering Mechanism of Cdc42 Recognition by Wiskott-Aldrich Syndrome Proteins
    Molecular Cell, Vol. 20, No. 2. (28 October 2005), pp. 313-324.
    by Lars Hemsath, Radovan Dvorsky, Dennis Fiegen, Marie-France Carlier, Mohammad R Ahmadian
    posted to protein electrostatic alignment by mikaellund on 2008-07-08 09:25:02 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Salt Enhances Calmodulin-Target Interaction
    Biophys. J., Vol. 90, No. 8. (15 April 2006), pp. 2903-2910.
    by Ingemar Andre, Tonu Kesvatera, Bo Jonsson, Sara Linse
    posted to protein electrostatic aggregation by mikaellund on 2008-07-08 08:49:08 as **
  • Salting the Charged Surface: pH and Salt Dependence of Protein G B1 Stability
    Biophys. J., Vol. 90, No. 8. (15 April 2006), pp. 2911-2921.
    by Stina Lindman, Wei-Feng Xue, Olga Szczepankiewicz, Mikael C Bauer, Hanna Nilsson, Sara Linse
    posted to protein electrostatic by mikaellund on 2008-07-08 08:45:42 as **
  • How Hofmeister ion interactions affect protein stability.
    Biophys. J., Vol. 71, No. 4. (1 October 1996), pp. 2056-2063.
    by RL Baldwin
    posted to protein hofmeister aggregation by mikaellund on 2008-07-08 08:39:31 as **
  • Why forces between proteins follow different Hofmeister series for pH above and below pI
    Biophysical Chemistry, Vol. 117, No. 3. (3 October 2005), pp. 217-224.
    by M Boström, FW Tavares, S Finet, F Skouri-Panet, A Tardieu, BW Ninham
    posted to protein ion-binding hofmeister aggregation by mikaellund on 2008-07-07 14:46:06 as **
  • The Hofmeister effect as seen by SAXS in protein solutions
    Current Opinion in Colloid & Interface Science, Vol. 9, No. 1-2. (August 2004), pp. 112-116.
    by S Finet, F Skouri-Panet, M Casselyn, F Bonneté, A Tardieu
    posted to virial protein hofmeister aggregation by mikaellund on 2008-07-07 13:53:54 as **
  • Ion Specific Protein Assembly and Hydrophobic Surface Forces
    Phys. Rev. Lett., Vol. 100, No. 25. (2008), 258105.
    by Mikael Lund, Pavel Jungwirth, Clifford E Woodward
    posted to ion-binding hydrophobic hofmeister aggregation by mikaellund on 2008-06-26 18:24:08 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Forces between Protein Molecules in Solution Arising from Fluctuations in Proton Charge and Configuration
    Proc Natl Acad Sci USA, Vol. 38 (1952), pp. 863-71.
    by J Kirkwood, J Shumaker
    posted to titration statmek protein electrostatic by mikaellund on 2008-06-25 11:58:00 as **
  • Equation of State Calculations by Fast Computing Machines
    J.~Chem. Phys., Vol. 21 (1953), pp. 1087-1097.
    by NA Metropolis, AW Rosenbluth, MN Rosenbluth, A Teller, E Teller
    posted to statmek by mikaellund on 2008-06-25 11:54:23 as **
  • Untersuchungen Über Ionenassoziation. I.
    Kgl. Danske Vid. Selsk. Mat.-fys. Medd., Vol. 7, No. 9. (1926), pp. 1-48.
    by N Bjerrum
    posted to statmek continuum-model by mikaellund on 2008-06-25 11:52:42 as **
  • Specific Ion Effects in Solutions of Globular Proteins: Comparison between Analytical Models and S imulation
    Journal of Physical Chemistry B, Vol. 109, No. 51. (2005), pp. 24489-24494.
    by M Bostrom, FW Tavares, D Bratko, BW Ninham
    posted to hofmeister continuum-model by mikaellund on 2008-06-25 11:51:03 as **
  • Theory of the Stability of Lyophobic Colloids
    (1948)
    by EJW Verwey, Th
    posted to continuum-model by mikaellund on 2008-06-25 11:49:21 as **
  • Theory of the Stability of Strongly Charged Lyophobic Sols and of the Adhesion of Strongly Charged Particles in Solutions of Electrolytes
    Acta Phys. Chim. URSS, Vol. 14 (1941), pp. 633-662.
    by BV Derjaguin, L Landau
    posted to continuum-model by mikaellund on 2008-06-25 11:48:42 as **
  • Improved SO2 Control with New Method for At-line Measurements
    (2003)
    by B Skands, K Pedersen, M Lund, T Pedersen
    posted to himself by mikaellund on 2008-06-24 18:15:04 as **
  • A molecular dynamics study of polarizable water
    Molecular Physics, Vol. 68, No. 3. (1989), pp. 563-581.
    by Peter Ahlström, Anders Wallqvist, Sven Engström, Bo Jönsson
    posted to md forcefield computing by mikaellund on 2008-06-24 14:45:09 as **
  • Characterization of the interaction between bovine pancreatic trypsin inhibitor and thiocyanate by NMR
    Biophysical Chemistry, Vol. 71, No. 2-3. (20 April 1998), pp. 221-234.
    by Claude Jolivalt, Anja Böckmann, Madeleine Riès-Kautt, Arnaud Ducruix, Eric Guittet
    posted to nmr ion-binding hofmeister by mikaellund on 2008-06-18 14:30:36 as **
  • Computer simulations of NaCl association in polarizable water
    The Journal of Chemical Physics, Vol. 100, No. 5. (1994), pp. 3757-3766.
    by David E Smith, Liem X Dang
    posted to forcefield by mikaellund on 2008-06-11 07:44:07 as **
  • Computational Study of Ion Binding to the Liquid Interface of Water
    J. Phys. Chem. B, Vol. 106, No. 40. (10 October 2002), pp. 10388-10394.
    by LX Dang
    posted to forcefield computing by mikaellund on 2008-06-09 17:02:29 as **
  • Detailed Study of Potassium Solvation Using Molecular Dynamics Techniques
    J. Phys. Chem. B, Vol. 103, No. 22. (3 June 1999), pp. 4714-4720.
    by TM Chang, LX Dang
    posted to forcefield computing by mikaellund on 2008-06-09 17:01:25 as **
  • Protein-protein interactions in concentrated electrolyte solutions.
    Biotechnology and bioengineering, Vol. 79, No. 4. (20 August 2002), pp. 367-380.
    by RA Curtis, J Ulrich, A Montaser, JM Prausnitz, HW Blanch
    posted to virial protein ion-binding hofmeister aggregation by mikaellund on 2008-06-09 14:50:39 as **
  • Amino Acid Side Chain Interactions in the Presence of Salts
    J. Phys. Chem. B, Vol. 109, No. 46. (24 November 2005), pp. 21989-21996.
    by SA Hassan
    posted to protein ion-binding by mikaellund on 2008-06-09 12:40:54 as **
  • On the driving forces for protein-protein association
    The Journal of Chemical Physics, Vol. 125, No. 2. (2006)
    by Arieh B Naim
    posted to protein hydrophobic hydrophilic aggregation by mikaellund on 2008-06-09 09:39:19 as **
  • Ion-Specific Effects in the Colloid-Colloid or Protein-Protein Potential of Mean Force: Role of Salt-Macroion van der Waals Interactions
    J. Phys. Chem. B, Vol. 108, No. 26. (1 July 2004), pp. 9228-9235.
    by FW Tavares, D Bratko, HW Blanch, JM Prausnitz
    posted to ion-binding hofmeister continuum-model aggregation by mikaellund on 2008-06-04 09:49:53 as **
  • The Control of Protein Stability and Association by Weak Interactions with Water: How Do Solvents Affect These Processes?
    Annual Review of Biophysics and Biomolecular Structure, Vol. 22, No. 1. (1993), pp. 67-97.
    by SN Timasheff
    posted to hydrophobic hofmeister by mikaellund on 2008-06-03 09:26:14 as **
  • notes Protein-protein binding is often associated with changes in protonation state
    Proteins: Structure, Function and Bioinformatics, Vol. 71 (2007), pp. 81-91.
    by AC Mason, JH Jensen
    posted to titration protein by mikaellund on 2008-06-02 10:53:04 as **
  • Potentials of mean force for biomolecular simulations: Theory and test on alanine dipeptide
    The Journal of Chemical Physics, Vol. 104, No. 21. (1996), pp. 8639-8648.
    by Matteo Pellegrini, Niels, Sebastian Doniach
    posted to statmek solvation hydrophobic by mikaellund on 2008-05-28 14:16:08 as **
  • An improved kirkwood superposition approximation for three atoms in rolling contact
    Molecular Physics, Vol. 74, No. 3. (1991), pp. 547-552.
    by P Attard
    posted to statmek hydrophobic by mikaellund on 2008-05-28 13:37:06 as **
  • notes Electrostatic aspects of protein-protein interactions
    Current Opinion in Structural Biology, Vol. 10, No. 2. (1 April 2000), pp. 153-159.
    by Felix B Sheinerman, Raquel Norel, Barry Honig
    posted to solvation protein electrostatic aggregation by mikaellund on 2008-05-27 10:22:43 as ** along with 2 people cjeans carlescorbi
  • Water and proteins: a love-hate relationship.
    Proc Natl Acad Sci U S A, Vol. 101, No. 10. (9 March 2004), pp. 3325-3326.
    by Y Levy, JN Onuchic
    posted to protein hydrophobic aggregation by mikaellund on 2008-05-27 10:12:17 as ** along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
  • notes Theory of the hydrophobic effect
    The Journal of Chemical Physics, Vol. 67, No. 8. (1977), pp. 3683-3704.
    by Lawrence R Pratt, David Chandler
    posted to statmek hydrophobic by mikaellund on 2008-05-16 11:47:35 as ** along with 1 person paulschlesinger
  • Molecular Hydrophobic Attraction and Ion-Specific Effects Studied by Molecular Dynamics
    Langmuir, Vol. 24, No. 4. (19 February 2008), pp. 1271-1283.
    by D Horinek, A Serr, DJ Bonthuis, M Bostrom, W Kunz, RR Netz
    posted to ion-binding hydrophobic by mikaellund on 2008-05-14 12:59:37 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Direct Evidence for Deprotonation of a Lysine Side Chain Buried in the Hydrophobic Core of a Protein
    J. Am. Chem. Soc. (3 May 2008)
    by Yuki Takayama, Carlos A Castaneda, Michael Chimenti, Bertrand Garcia-Moreno, Junji Iwahara
    posted to titration protein by mikaellund on 2008-05-08 07:50:27 as **
  • How well does a restrained electrostatic potential(RESP) model perform in calculating conformational energies of organic and biological molecules?
    J. Comp. Chem., Vol. 21, No. 12. (2000), pp. 1049-1074.
    by J Wang, P Cieplak, PA Kollman
    posted to computing by mikaellund on 2008-05-02 12:47:44 as **
  • The Hofmeister series and protein-salt interactions
    J. Chem. Phys., Vol. 124, No. 23. (2006), 234905.
    by Seishi Shimizu, William M Mclaren, Nobuyuki Matubayasi
    posted to protein solvation polymers molecular ion-binding hofmeister by mikaellund on 2008-04-30 13:01:22 as **
  • Salting-In and Salting-Out of Hydrophobic Solutes in Aqueous Salt Solutions
    J. Phys. Chem. B, Vol. 105, No. 27. (2001), pp. 6380-6386.
    by A Kalra, N Tugcu, SM Cramer, S Garde
    posted to hydrophobic hofmeister by mikaellund on 2008-04-30 12:30:16 as **
  • Interfaces and the driving force of hydrophobic assembly
    Nature, Vol. 437, No. 7059. (28 September 2005), pp. 640-647.
    by David Chandler
    posted to interface hydrophobic by mikaellund on 2008-04-30 10:29:40 as ** along with 3 people apostola simone paulschlesinger
  • Amber 9
    (2006)
    by DA Case, TA Darden, Cheatham, CL Simmerling, J Wang, RE Duke, R Luo, KM Merz, DA Pearlman, M Crowley, RC Walker, W Zhang, B Wang, S Hayik, A Roitberg, G Seabra, KF Wong, F Paesani, X Wu, S Brozell, V Tsui, H Gohlke, L Yang, C Tan, J Mongan, V Hornak, G Cui, P Beroza, DH Mathews, C Schafmeister, WS Ross, PA Kollman
    posted to computing by mikaellund on 2008-04-29 15:46:11 as **
  • Structure and Properties of Neat Liquids Using Nonadditive Molecular Dynamics: Water, Methanol, and N-Methylacetamide
    Journal of Physical Chemistry, Vol. 99, No. 16. (1995), pp. 6208-6219.
    by James W Caldwell, Peter A Kollman
    posted to computing by mikaellund on 2008-04-29 15:19:38 as **
  • A smooth particle mesh Ewald method
    The Journal of Chemical Physics, Vol. 103, No. 19. (1995), pp. 8577-8593.
    by Ulrich Essmann, Lalith Perera, Max L Berkowitz, Tom Darden, Hsing Lee, Lee G Pedersen
    posted to electrostatic computing by mikaellund on 2008-04-29 15:14:58 as ** along with 6 people 6rheology lillekatt and_ped10 easybakemuffin RamuAnandakrishnan ashaytan
  • Specific Ion Effects at the Air/Water Interface
    Chemical Reviews, Vol. 106, No. 4. (2006), pp. 1259-1281.
    by P Jungwirth, DJ Tobias
    posted to no-tag by mikaellund on 2008-04-29 15:03:28 as **
  • Specific Ion Effects: Why the Properties of Lysozyme in Salt Solutions Follow a Hofmeister Series
    Biophys. J., Vol. 85, No. 2. (1 August 2003), pp. 686-694.
    by M Bostrom, DRM Williams, BW Ninham
    posted to vdw protein ion-binding hofmeister by mikaellund on 2008-04-29 14:49:51 as **
  • Solvent effects and hydration of a tripeptide in sodium halide aqueous solutions: an in silico study
    Phys. Chem. Chem. Phys., Vol. 9 (2007), pp. 5423-5435.
    by MV Fedorov, JM Goodman, S Schumm
    posted to ion-binding hofmeister by mikaellund on 2008-04-23 08:49:45 as **
  • Untitled
    Arch Exp Pathol Phar makol (Leipzig), Vol. 24 (1888), pp. 247-260.
    by F Hofmeister
    posted to hofmeister by mikaellund on 2008-04-22 13:44:18 as **
  • Theory of Electric Polarization
    (1973)
    by C Böttcher
    posted to continuum-model by mikaellund on 2008-04-22 13:21:10 as **
  • Protein interactions near crystallization: a microscopic approach to the Hofmeister series
    J. Phys.: Condens. Matter, Vol. 12 (2000), pp. A443-A449.
    by R Piazza, M Pierno
    posted to aggregation hofmeister by mikaellund on 2008-04-22 13:19:17 as **
  • Osmotic and Activity Coefficients for the Symmetrical Tetraalkyl Ammonium Halides in Aqueous Solu tion at 25 C
    J. Phys. Chem., Vol. 68, No. 4. (1964), pp. 911-917.
    by S Lindenbaum, GE Boyd
    posted to activity by mikaellund on 2008-04-22 13:15:45 as **
  • Electrolyte Solutions
    (1959)
    by RA Robinson, RH Stokes
    posted to activity by mikaellund on 2008-04-22 13:12:39 as **
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