mingzhi's library 199 articles Export

	Transcriptional Profiling of the Dose Response: A More Powerful Approach for Characterizing Drug Activities [My Copy] PLoS Comput Biol, Vol. 5, No. 9. (18 September 2009), e1000512. by Rui-Ru Ji, Heshani de Silva, Yisheng Jin, et al.Robert E. Bruccoleri, Jian Cao, Aiqing He, Wenjun Huang, Paul S. Kayne, Isaac M. Neuhaus, Karl-Heinz Ott, Becky Penhallow, Mark I. Cockett, Michael G. Neubauer, Nathan O. Siemers, Petra Ross-Macdonald posted to drug by mingzhi on 2009-09-22 15:12:32 as along with 3 people klexa kshameer giovanni
	Cytochrome P450 2C8 pharmacogenetics: a review of clinical studies [My Copy] Pharmacogenomics, Vol. 10, No. 9. (September 2009), pp. 1489-1510. by Elizabeth B. Daily, Christina L. Aquilante posted to pharmacogenetics by mingzhi on 2009-09-18 18:18:58 as
	Disease signatures are robust across tissues and experiments [My Copy] Molecular Systems Biology, Vol. 5 (15 September 2009) by Joel T. Dudley, Robert Tibshirani, Tarangini Deshpande, Atul J. Butte posted to expression disease by mingzhi on 2009-09-18 18:15:51 as along with 13 people tmmurali giovanni grahamc renatomilani ptrobajo zufar jclau klo ngehlenborg dswan winterschlaefer daforerog brianb
	Drug name recognition and classification in biomedical textsA case study outlining approaches underpinning automated systems [My Copy] Drug Discovery Today, Vol. 13, No. 17-18. (September 2008), pp. 816-823. by I. Segurabedmar, P. Martinez, M. Segurabedmar posted to text-mining metamap drug by mingzhi on 2009-09-17 16:35:57 as
	Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles. [My Copy] PloS one, Vol. 3, No. 12. (2008) by Carlos Prieto, Alberto Risueño, Celia Fontanillo, Javier De las Rivas posted to coexpression by mingzhi on 2009-09-16 14:04:56 as along with 1 person jfr
	Network analyses in systems pharmacology [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2466-2472. by Seth I. Berger, Ravi Iyengar posted to pharmacology network by mingzhi on 2009-09-15 14:20:52 as along with 4 people abhishek_tiwari manduca ptrobajo phoenixzxl
	Identification of deregulated oncogenic pathways in renal cell carcinoma: an integrated oncogenomic approach based on gene expression profiling [My Copy] Oncogene, Vol. 26, No. 9. (26 February 2007), pp. 1346-1350. by K. A. Furge, M. H. Tan, K. Dykema, et al.E. Kort, W. Stadler, X. Yao, M. Zhou, B. T. Teh posted to pathway expression by mingzhi on 2009-09-14 16:47:21 as along with 1 person frohike
	Gene Vector Analysis (Geneva): A unified method to detect differentially-regulated gene sets and similar microarray experiments [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 348. by Stephen Tanner, Pankaj Agarwal posted to method expression by mingzhi on 2009-09-11 11:28:42 as along with 5 people frohike jfr mitko GeeSharpMinor guhjy
	Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (26 July 2006), 359. by Ian Jeffery, Desmond Higgins, Aedin Culhane posted to signature by mingzhi on 2009-09-08 14:24:16 as along with 11 people zchen daforerog zufar akastrin tg150 rdiaz jfr mayercd shikin bakakaj renatomilani
	Gene expression-based screening identifies microtubule inhibitors as inducers of PGC-1α and oxidative phosphorylation [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 12. (25 March 2008), pp. 4721-4726. by Zoltan Arany, Bridget K. Wagner, Yanhong Ma, Jessica Chinsomboon, Dina Laznik, Bruce M. Spiegelman posted to screening expression drug by mingzhi on 2009-09-08 13:01:48 as along with 2 people guhjy giovanni
	Supervised prediction of drug-target interactions using bipartite local models [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2397-2403. by Kevin Bleakley, Yoshihiro Yamanishi posted to prediction drug-target by mingzhi on 2009-09-07 17:38:04 as along with 4 people ptrobajo apocapoc zwang phoenixzxl
	Structure-based maximal affinity model predicts small-molecule druggability [My Copy] Nat Biotech, Vol. 25, No. 1. (08 January 2007), pp. 71-75. by Alan C. Cheng, Ryan G. Coleman, Kathleen T. Smyth, et al.Qing Cao, Patricia Soulard, Daniel R. Caffrey, Anna C. Salzberg, Enoch S. Huang posted to structure drug by mingzhi on 2009-09-07 17:03:40 as along with 9 people flbarroso phoenixzxl ubcg08l sschurer ucbcjbm jerome yeastyboy willpitt higueruelo
	Data completeness[mdash]the Achilles heel of drug-target networks [My Copy] Nat Biotech, Vol. 26, No. 9. (September 2008), pp. 983-984. by Jordi Mestres, Elisabet Gregori-Puigjane, Sergi Valverde, Ricard V. Sole posted to network drug-target completeness by mingzhi on 2009-08-13 18:00:44 as along with 3 people apocapoc jfr ptrobajo
	System-wide molecular evidence for phenotypic buffering in Arabidopsis [My Copy] Nat Genet, Vol. 41, No. 2. (25 February 2009), pp. 166-167. by Jingyuan Fu, Joost J. B. Keurentjes, Harro Bouwmeester, et al.Twan America, Francel W. A. Verstappen, Jane L. Ward, Michael H. Beale, Ric C. H. de Vos, Martijn Dijkstra, Richard A. Scheltema, Frank Johannes, Maarten Koornneef, Dick Vreugdenhil, Rainer Breitling, Ritsert C. Jansen posted to arabidopsis by mingzhi on 2009-08-13 17:49:10 as along with 1 person TRHvidsten
	Understanding human metabolic physiology: a genome-to-systems approach [My Copy] Trends in Biotechnology, Vol. 27, No. 1. (14 January 2009), pp. 37-44. by M. Mo, B. Palsson posted to metabolic human by mingzhi on 2009-08-13 17:41:34 as along with 5 people schwartzjmc agonzale guhjy ptrobajo dullhunk
	The implications of human metabolic network topology for disease comorbidity [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 29. (22 July 2008), pp. 9880-9885. by D. S. Lee, J. Park, K. A. Kay, N. A. Christakis, Z. N. Oltvai, A. L. BarabÃ¡si posted to network disease by mingzhi on 2009-08-13 17:36:01 as along with 6 people tomhebbron sergiun klaatujohn ptrobajo guhjy Borelli
	Epigenetic changes during disease progression in a murine model of human chronic lymphocytic leukemia [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 32. (11 August 2009), pp. 13433-13438. by Shih-Shih Chen, Aparna Raval, Amy J. Johnson, et al.Erin Hertlein, Te-Hui Liu, Victor X. Jin, Mara H. Sherman, Shu-Jun Liu, David W. Dawson, Katie E. Williams, Mark Lanasa, Sandya Liyanarachchi, Thomas S. Lin, Guido Marcucci, Yuri Pekarsky, Ramana Davuluri, Carlo M. Croce, Denis C. Guttridge, Michael A. Teitell, John C. Byrd, Christoph Plass posted to epigenetics disease cancer by mingzhi on 2009-08-13 10:08:05 as along with 1 person jdbowes
	From carbohydrate leads to glycomimetic drugs [My Copy] Nat Rev Drug Discov, Vol. 8, No. 8. (24 August 2009), pp. 661-677. by Beat Ernst, John L. Magnani posted to drug carbohydrate by mingzhi on 2009-08-13 10:03:39 as along with 1 person pedromts
	‘Metabolite-likeness’ as a criterion in the design and selection of pharmaceutical drug libraries [My Copy] Drug Discovery Today, Vol. 14, No. 1-2. (28 January 2009), pp. 31-40. by P. Dobson, Y. Patel, D. Kell posted to no-tag by mingzhi on 2009-08-12 15:11:55 as along with 9 people richardbickerton massivemayhem vpenelle jmuhlich lptolik pauldobson sschurer egonw dullhunk
	Time's up: Bursting out of Transcription [My Copy] Cell, Vol. 138, No. 3. (07 August 2009), pp. 430-432. by Ethan Ford, Dimitris Thanos posted to transcription cycle cell by mingzhi on 2009-08-11 17:03:41 as
	Systems biology and combination therapy in the quest for clinical efficacy [My Copy] Nat Chem Biol, Vol. 2, No. 9. (September 2006), pp. 458-466. by Jonathan B. Fitzgerald, Birgit Schoeberl, Ulrik B. Nielsen, Peter K. Sorger posted to combination drug system by mingzhi on 2009-08-04 16:37:35 as along with 4 people and 2 groups agomez jaycopeland cdppublications xtizon SorgerLab CDP
	Chemical biology: Branching out into chemical space [My Copy] Nat Rev Drug Discov, Vol. 8, No. 8. (August 2009), pp. 615-615. by Charlotte Harrison posted to bioactivity chemical by mingzhi on 2009-08-01 14:09:39 as
	Building Disease-Specific Drug-Protein Connectivity Maps from Molecular Interaction Networks and PubMed Abstracts [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (31 July 2009), e1000450. by Jiao Li, Xiaoyan Zhu, Jake Y. Chen posted to connectivity map by mingzhi on 2009-08-01 05:31:28 as along with 8 people and 2 groups bertelsen ptrobajo apocapoc andrewclegg NickFurnham guhjy kshameer frohike Journal picks Orengo Group Journal Picks
	Ribonucleoprotein dynamics connects mRNA networks with drug mechanisms [My Copy] Mol Syst Biol, Vol. 5 (28 July 2009) by Myriam Gorospe posted to drug mrna network post-transcription by mingzhi on 2009-07-29 14:44:07 as
	Pathway databases and tools for their exploitation: benefits, current limitations and challenges [My Copy] Molecular Systems Biology, Vol. 5 (28 July 2009) by Anna Bauer-Mehren, Laura I. Furlong, Ferran Sanz posted to database pathway by mingzhi on 2009-07-29 14:32:29 as along with 7 people dullhunk thomaskelder ngehlenborg ptrobajo allysonlister daforerog renatomilani
	Yeast chemical genomics and drug discovery: an update [My Copy] Trends in Pharmacological Sciences, Vol. 29, No. 10. (26 October 2008), pp. 499-504. by Shawn Hoon, St, Guri Giaever, Corey Nislow posted to drug yeast by mingzhi on 2009-07-20 11:48:48 as along with 3 people tjchen guhjy emmackinnon
	Synergistic drug combinations tend to improve therapeutically relevant selectivity [My Copy] Nat Biotech, Vol. 27, No. 7. (05 July 2009), pp. 659-666. by Joseph Lehar, Andrew S. Krueger, William Avery, et al.Adrian M. Heilbut, Lisa M. Johansen, E. Roydon Price, Richard J. Rickles, Glenn F. Short III, Jane E. Staunton, Xiaowei Jin, Margaret S. Lee, Grant R. Zimmermann, Alexis A. Borisy posted to combination drug by mingzhi on 2009-07-20 11:33:13 as along with 2 people ipark-kaist biomcgary
	Models from experiments: combinatorial drug perturbations of cancer cells [My Copy] Mol Syst Biol, Vol. 4 (2 September 2008) by Sven Nelander, Weiqing Wang, Bjorn Nilsson, et al.Qing-Bai She, Christine Pratilas, Neal Rosen, Peter Gennemark, Chris Sander posted to cancer combination by mingzhi on 2009-07-20 11:29:19 as along with 6 people tjchen jfr aheilbut ptrobajo oelemento balabu
	The Novel Combination of Chlorpromazine and Pentamidine Exerts Synergistic Antiproliferative Effects through Dual Mitotic Action [My Copy] Cancer Res, Vol. 67, No. 23. (1 December 2007), pp. 11359-11367. by Margaret S. Lee, Lisa Johansen, Yanzhen Zhang, et al.Amy Wilson, Mitchell Keegan, William Avery, Peter Elliott, Alexis A. Borisy, Curtis T. Keith posted to cancer combination by mingzhi on 2009-07-20 11:27:02 as
	A Dynamic Network Approach for the Study of Human Phenotypes [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (10 April 2009), e1000353. by César A. Hidalgo, Nicholas Blumm, Albert-László Barabási, Nicholas A. Christakis posted to disease network phenotypes by mingzhi on 2009-07-20 06:29:22 as along with 6 people and 1 group parnell keepwiz daveGerrard fenghezi vtraag biomcgary Marcotte_Lab
	Intrinsic Protein Disorder and Interaction Promiscuity Are Widely Associated with Dosage Sensitivity [My Copy] Vol. 138, No. 1. (10 July 2009), pp. 198-208. by Tanya Vavouri, Jennifer I. Semple, Rosa Garcia-Verdugo, Ben Lehner posted to disorder promiscuity by mingzhi on 2009-07-17 18:22:58 as
	Disorder, Promiscuity, and Toxic Partnerships [My Copy] Vol. 138, No. 1. (10 July 2009), pp. 16-18. by Edward M. Marcotte, Mark Tsechansky posted to disorder promiscuity toxic by mingzhi on 2009-07-17 18:22:22 as
	Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species. [My Copy] PLoS biology, Vol. 7, No. 6. (16 June 2009), e1000134. by Pedro Beltrao, Jonathan C. Trinidad, Dorothea Fiedler, et al.Assen Roguev, Wendell A. Lim, Kevan M. Shokat, Alma L. Burlingame, Nevan J. Krogan posted to phosphoproteome by mingzhi on 2009-07-17 18:13:45 as along with 14 people psique dakelley robfsouza emptyhb leemond31 chica tmmurali biomcgary kiekyon neils bpcusack djkt renatomilani ematsen
	Genetic mapping in human disease. [My Copy] Science (New York, N.Y.), Vol. 322, No. 5903. (7 November 2008), pp. 881-888. by David Altshuler, Mark J. Daly, Eric S. Lander posted to disease genetic human science by mingzhi on 2009-07-16 02:51:11 as along with 19 people and 1 group psique buyske Zephyrus ilyashl rdiaz zufar jfr maren guhjy daforerog gbloeb jbhiatt eetadic vplagnol cheyloveday songpku renatomilani lp2 pkonings Roswell Cancer Crosstalk
	Human metabolic network reconstruction and its impact on drug discovery and development☆ [My Copy] Drug Discovery Today, Vol. 13, No. 9-10. (May 2008), pp. 402-408. by H. Ma, I. Goryanin posted to discovery drug metabolic network review by mingzhi on 2009-07-14 15:58:44 as along with 2 people mdstobbe guhjy
	Iterative signature algorithm for the analysis of large-scale gene expression data [My Copy] Physical Review E, Vol. 67, No. 3. (11 Mar 2003), 031902. by Sven Bergmann, Jan Ihmels, Naama Barkai posted to expression signature by mingzhi on 2009-07-10 13:29:25 as along with 2 people and 1 group TRHvidsten tvdbulck Bioinformatics
	A modular approach for integrative analysis of large-scale gene-expression and drug-response data [My Copy] Nat Biotech, Vol. 26, No. 5. (08 May 2008), pp. 531-539. by Zoltan Kutalik, Jacques S. Beckmann, Sven Bergmann posted to expression nature by mingzhi on 2009-07-10 09:53:24 as along with 9 people TRHvidsten vingron guhjy aviad_work jfr stringertheory tmmurali oelemento ptrobajo
	Identifying genetic components of drug response in mice [My Copy] Pharmacogenomics, Vol. 9, No. 9. (September 2008), pp. 1323-1330. by Chris Cotsapas posted to drug mice response by mingzhi on 2009-07-08 14:01:13 as
	Gene expression profiling of imatinib and PD166326-resistant CML cell lines identifies Fyn as a gene associated with resistance to BCR-ABL inhibitors [My Copy] Molecular Cancer Therapeutics (30 June 2009) by Sébastien Grosso, Alexandre Puissant, Maeva Dufies, et al.Pascal Colosetti, Arnaud Jacquel, Kevin Lebrigand, Pascal Barbry, Marcel Deckert, Jill P. Cassuto, Bernard Mari, Patrick Auberger posted to cml expression imatinib inhibitors by mingzhi on 2009-07-06 06:26:36 as
	Charting the molecular network of the drug target Bcr-Abl [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 18. (5 May 2009), pp. 7414-7419. by Marc Brehme, Oliver Hantschel, Jacques Colinge, et al.Ines Kaupe, Melanie Planyavsky, Thomas Köcher, Karl Mechtler, Keiryn L. Bennett, Giulio Superti-Furga posted to complex drug network target by mingzhi on 2009-07-06 03:33:32 as along with 2 people renatomilani oelemento
	Molecular Understanding and Modern Application of Traditional Medicines: Triumphs and Trials [My Copy] Cell, Vol. 130, No. 5. (07 September 2007), pp. 769-774. by T. Corson, C. Crews posted to medicine traditional by mingzhi on 2009-07-05 05:01:48 as along with 1 person guhjy
	Drug Target Identification Using Side-Effect Similarity [My Copy] Science, Vol. 321, No. 5886. (11 July 2008), pp. 263-266. by Monica Campillos, Michael Kuhn, Anne-Claude Gavin, Lars J. Jensen, Peer Bork posted to drug science side-effect similarity target by mingzhi on 2009-07-04 16:07:30 as along with 17 people anthropomorphism npt11tpn mitko TRHvidsten dullhunk jfr zimbo1 bpcusack jmuhlich aheilbut larsjuhljensen tmmurali askrajiv reyez roys ajaymalik raiyar
	Multi-parameter phenotypic profiling: using cellular effects to characterize small-molecule compounds. [My Copy] Nature reviews. Drug discovery, Vol. 8, No. 7. (July 2009), pp. 567-578. by Yan Feng, Timothy J. Mitchison, Andreas Bender, Daniel W. Young, John A. Tallarico posted to comounds drug integration by mingzhi on 2009-07-04 16:05:08 as along with 4 people abhishek_tiwari guhjy sschurer sameersoi
	Gene expression signature-based chemical genomic prediction identifies a novel class of HSP90 pathway modulators [My Copy] Cancer Cell, Vol. 10, No. 4. (October 2006), pp. 321-330. by Haley Hieronymus, Justin Lamb, Kenneth N. Ross, et al.Xiao P. Peng, Cristina Clement, Anna Rodina, Maria Nieto, Jinyan Du, Kimberly Stegmaier, Srilakshmi M. Raj posted to chemogenomic by mingzhi on 2009-07-04 09:13:36 as along with 5 people ipark-kaist guhjy inbetweener jfr askrajiv
	CELL BIOLOGY: Chemical Genetics Hits [My Copy] Science, Vol. 306, No. 5693. (1 October 2004), pp. 67-68. by David S. Bellows, Mike Tyers posted to chemogenomic by mingzhi on 2009-07-04 08:57:09 as
	Chemogenomic profiling on a genome-wide scale using reverse-engineered gene networks [My Copy] Nature Biotechnology, Vol. 23, No. 3. (04 March 2005), pp. 377-383. by Diego di Bernardo, Michael J. Thompson, Timothy S. Gardner, et al.Sarah E. Chobot, Erin L. Eastwood, Andrew P. Wojtovich, Sean J. Elliott, Scott E. Schaus, James J. Collins posted to chemogenomic network targets by mingzhi on 2009-07-04 08:49:49 as along with 11 people and 2 groups edwardmorrissey VGreiff provero ptrobajo rklancer snuppepuppan kentsis mjt rhem1224 balajis jayster4 TCR_Signaling SysbioMPI-TCells
	Chemogenomics: an emerging strategy for rapid target and drug discovery [My Copy] Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 262-275. by Markus Bredel, Edgar Jacoby posted to chemogenomics drug nature review by mingzhi on 2009-07-04 08:44:58 as along with 2 people Yanno kuhn
	Network analysis of oncogenic Ras activation in cancer. [My Copy] Science (New York, N.Y.), Vol. 318, No. 5849. (19 October 2007), pp. 463-467. by E. C. Stites, P. C. Trampont, Z. Ma, K. S. Ravichandran posted to cancer modelling oncogenic science by mingzhi on 2009-07-02 15:00:19 as along with 5 people and 1 group fesousa jackjackjjj shigepong zwang oelemento Complex Networks
	Meet the human metabolome [My Copy] Nature, Vol. 446, No. 7131. (1 March 2007), pp. 8-8. by Helen Pearson posted to human metabolome nature by mingzhi on 2009-07-02 14:55:59 as along with 3 people and 1 group katerinakal guhjy raiyar steinmetzlab
	A simple recipe for drug interaction networks earns its stars. [My Copy] Nature genetics, Vol. 38, No. 4. (April 2006), pp. 405-406. by D. Schmatz, S. Friend posted to drug nature network by mingzhi on 2009-07-02 14:54:36 as along with 1 person gwenknight

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mingzhi's library 199 articles Export

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