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minostro's library [56 articles]

Recent papers added to minostro's library.
  • Gene ordering in microarray data using parallel memetic algorithms
    Parallel Processing, 2005. ICPP 2005 Workshops. International Conference Workshops on (2005), pp. 604-611.
    by A Mendes, C Cotta, V Garcia, P Franca, P Moscato
    posted to memetic by minostro on 2008-03-26 23:04:21 as **
  • A parallel memetic algorithm applied to the total tardiness machine scheduling problem
    Parallel and Distributed Processing Symposium, 2006. IPDPS 2006. 20th International (2006), 8 pp..
    by VJ Garcia, PM Franca, Ad Mendes, P Moscato
    posted to memetic by minostro on 2008-03-26 22:59:12 as **
  • Seahawk: moving beyond HTML in Web-based bioinformatics analysis
    BMC Bioinformatics, Vol. 8 (18 June 2007), 208.
    by Paul MK Gordon, Christoph W Sensen
    posted to xml by minostro on 2008-03-26 04:50:08 as ** along with 4 people jyuh moborg dullhunk egonw
  • Mining and analyzing the topological structure of protein-protein interaction networks
    (2006), pp. 185-189.
    by Daniel D Wu, Xiaohua Hu
    posted to protein_protein_interaction by minostro on 2008-03-25 22:54:11 as **
  • On the structure of protein-protein interaction networks.
    Biochem Soc Trans, Vol. 31, No. Pt 6. (December 2003), pp. 1491-1496.
    by A Thomas, R Cannings, NA Monk, C Cannings
    posted to protein_protein_interaction by minostro on 2008-03-25 22:53:43 as **
  • Topological structure analysis of the protein-protein interaction network in budding yeast
    Nucl. Acids Res., Vol. 31, No. 9. (1 May 2003), pp. 2443-2450.
    by Dongbo Bu, Yi Zhao, Lun Cai, Hong Xue, Xiaopeng Zhu, Hongchao Lu, Jingfen Zhang, Shiwei Sun, Lunjiang Ling, Nan Zhang, Guojie Li, Runsheng Chen
    posted to protein_protein_interaction by minostro on 2008-03-25 22:53:17 as ** along with 5 people and 1 group ellakat carlk lfriedl cjeans iris_2001 kdl
  • Microarray data analysis: from disarray to consolidation and consensus
    Nature Reviews Genetics, Vol. 7, No. 1. (January 2006), pp. 55-65.
    by David B Allison, Xiangqin Cui, Grier P Page, Mahyar Sabripour
    posted to microarray by minostro on 2008-03-25 04:05:21 as ** along with 22 people and 2 groups aviad_work jo_davies giovenko jyuh barry textoris jfr Ayest balicea sterovetta lhonigberg acidwizard ronaldozhou vpschulz rmk schuylrp Garamonfok debasis GeeSharpMinor dimatura heliopais shikin structural_bioinformatics Bioinformatics
  • Mining gene expression profiles: expression signatures as cancer phenotypes
    Nature Reviews Genetics, Vol. 8, No. 8. (03 July 2007), pp. 601-609.
    by Joseph R Nevins, Anil Potti
    posted to cancer by minostro on 2008-03-25 03:43:01 as ** along with 4 people and 1 group jyuh rdiaz giovanni cabbagezs GeschwindLab
  • What is bioinformatics? A proposed definition and overview of the field.
    Methods Inf Med, Vol. 40, No. 4. (2001), pp. 346-358.
    by NM Luscombe, D Greenbaum, M Gerstein
    posted to bioinformatics by minostro on 2008-03-25 00:03:03 as ** along with 1 person adilson_mohr
  • EXPANDER--an integrative program suite for microarray data analysis.
    BMC Bioinformatics, Vol. 6 (2005)
    by R Shamir, A Maron-Katz, A Tanay, C Linhart, I Steinfeld, R Sharan, Y Shiloh, R Elkon
    posted to clustering by minostro on 2008-03-10 02:45:39 as ** along with 2 people gpalidwor natstreet
  • CLICK and EXPANDER: a system for clustering and visualizing gene expression data.
    Bioinformatics, Vol. 19, No. 14. (22 September 2003), pp. 1787-1799.
    by R Sharan, A Maron-Katz, R Shamir
    posted to clustering by minostro on 2008-03-10 02:45:03 as ** along with 2 people ujh maralena
  • Protein arginine-methyltransferase-dependent oncogenesis
    Nature Cell Biology, Vol. 9, No. 10. (23 September 2007), pp. 1208-1215.
    by Ngai Cheung, Li C Chan, Alex Thompson, Michael L Cleary, Chi
    posted to prmt1_prostate by minostro on 2008-03-09 23:50:54 as **
  • PC-SPES inhibits cell proliferation by modulating p21, cyclins D, E and B and multiple cell cycle-related genes in prostate cancer cells.
    Cell Cycle, Vol. 2, No. 1. (b 2003), pp. 59-63.
    by X Lu, J Guo, TC Hsieh
    posted to skp1a_prostate by minostro on 2008-03-09 23:29:57 as **
  • Mechanisms of Disease: biomarkers and molecular targets from microarray gene expression studies in prostate cancer.
    Nat Clin Pract Urol, Vol. 4, No. 12. (December 2007), pp. 677-687.
    by CS Cooper, C Campbell, S Jhavar
    posted to prostate by minostro on 2008-03-03 00:12:49 as **
  • Molecular and cellular biology of prostate cancer
    Cancer and Metastasis Reviews, Vol. 16, No. 1. (1 June 1997), pp. 29-66.
    by El-Nasir Lalani, Marc E Laniado, Paul D Abel
    posted to prostate by minostro on 2008-03-02 23:56:55 as **
  • Molecular biology of prostate cancer
    Prostate Cancer Prostatic Dis, Vol. 7, No. 1. (2004), pp. 6-20.
    by MK Karayi, AF Markham
    posted to prostate by minostro on 2008-03-02 23:56:15 as **
  • Cyclin-dependent kinase 5 activity controls cell motility and metastatic potential of prostate cancer cells.
    Cancer Res, Vol. 66, No. 15. (1 August 2006), pp. 7509-7515.
    by CJ Strock, JI Park, EK Nakakura, GS Bova, JT Isaacs, DW Ball, BD Nelkin
    posted to cdk5_prostate by minostro on 2008-03-01 08:15:58 as **
  • Immunocytochemical detection of matrix metalloproteinase expression in prostate cancer.
    In Vivo, Vol. 15, No. 1. (b 2001), pp. 65-70.
    by B Bodey, B Bodey, SE Siegel, HE Kaiser
    posted to mmp3_prostate by minostro on 2008-02-29 04:09:59 as **
  • CXCL12-CXCR4 interactions modulate prostate cancer cell migration, metalloproteinase expression and invasion.
    Lab Invest, Vol. 84, No. 12. (December 2004), pp. 1666-1676.
    by S Singh, UP Singh, WE Grizzle, JW Lillard
    posted to mmp3_prostate by minostro on 2008-02-29 04:06:04 as ** along with 1 person CCampbell00
  • Expression and functional role of CCR9 in prostate cancer cell migration and invasion.
    Clin Cancer Res, Vol. 10, No. 24. (15 December 2004), pp. 8743-8750.
    by S Singh, UP Singh, JK Stiles, WE Grizzle, JW Lillard
    posted to mmp3_prostate by minostro on 2008-02-29 04:02:45 as **
  • Assessment of 54 Biomarkers for Biopsy-Detectable Prostate Cancer
    Cancer Epidemiol Biomarkers Prev, Vol. 16, No. 10. (1 October 2007), pp. 1966-1972.
    by Dipen J Parekh, Donna P Ankerst, Jacques Baillargeon, Betsy Higgins, Elizabeth A Platz, Dean Troyer, Javier Hernandez, Robin J Leach, Anna Lokshin, Ian M Thompson
    posted to mmp3_prostate by minostro on 2008-02-29 03:55:18 as **
  • Prostate stem cell antigen is a marker of late intermediate prostate epithelial cells.
    Mol Cancer Res, Vol. 1, No. 2. (December 2002), pp. 113-121.
    by CP Tran, C Lin, J Yamashiro, RE Reiter
    posted to ly6e_prostate by minostro on 2008-02-29 03:43:05 as **
  • Growth, regeneration, and tumorigenesis of the prostate activates the PSCA promoter.
    Proc Natl Acad Sci U S A, Vol. 99, No. 1. (8 January 2002), pp. 401-406.
    by T Watabe, M Lin, H Ide, AA Donjacour, GR Cunha, ON Witte, RE Reiter
    posted to ly6e_prostate by minostro on 2008-02-29 03:42:15 as **
  • Prostate stem cell antigen: a cell surface marker overexpressed in prostate cancer.
    Proc Natl Acad Sci U S A, Vol. 95, No. 4. (17 February 1998), pp. 1735-1740.
    by RE Reiter, Z Gu, T Watabe, G Thomas, K Szigeti, E Davis, M Wahl, S Nisitani, J Yamashiro, MM Le Beau, M Loda, ON Witte
    posted to ly6e_prostate by minostro on 2008-02-29 03:41:19 as ** along with 1 person gopal
  • A gene network for navigating the literature.
    Nat Genet, Vol. 36, No. 7. (July 2004)
    by R Hoffmann, A Valencia
    posted to gene_information by minostro on 2008-02-29 00:37:15 as ** along with 7 people and 2 groups Borelli frohike aalibes yas benny caporaso adoms T_lab biomedical-nlp
  • A novel NIK-MAPK signaling pathway upregulates NF-kappaB activity in melanoma cells
    J. Biol. Chem. (28 December 2001), pp. 7920-7928.
    by Punita Dhawan, Ann Richmond
    posted to melanoma by minostro on 2008-02-20 03:33:06 as **
  • Focal Adhesion Kinase Promotes the Aggressive Melanoma Phenotype
    Cancer Res, Vol. 65, No. 21. (1 November 2005), pp. 9851-9860.
    by Angela R Hess, Lynne-Marie Postovit, Naira V Margaryan, Elisabeth A Seftor, Galen B Schneider, Richard E Seftor, Brian J Nickoloff, Mary J Hendrix
    posted to melanoma by minostro on 2008-02-20 03:18:58 as **
  • Claudin-1 overexpression in melanoma is regulated by PKC and contributes to melanoma cell motility
    Oncogene, Vol. 26, No. 26. (2007), pp. 3846-3856.
    by PD Leotlela, MS Wade, PH Duray, MJ Rhode, HF Brown, DT Rosenthal, SK Dissanayake, R Earley, FE Indig, BJ Nickoloff, DD Taub, OP Kallioniemi, P Meltzer, PJ Morin, AT Weeraratna
    posted to melanoma by minostro on 2008-02-20 03:10:59 as **
  • Evidence for involvement of Wnt signaling pathway in IB-MECA mediated suppression of melanoma cells
    Oncogene, Vol. 21, No. 25. (6 June 2002), pp. 4060-4064.
    by Pnina Fishman, Lea Madi, Sara Bar-Yehuda, Faina Barer, Luis Delvalle, Kamel Khalili
    posted to melanoma by minostro on 2008-02-20 03:02:46 as **
  • Increased Expression of Integrin-Linked Kinase Is Correlated with Melanoma Progression and Poor Patient Survival
    Clin Cancer Res, Vol. 9, No. 12. (1 October 2003), pp. 4409-4414.
    by Derek L Dai, Nikita Makretsov, Eric I Campos, Changzheng Huang, Youwen Zhou, David Huntsman, Madgalena Martinka, Gang Li
    posted to melanoma by minostro on 2008-02-20 02:55:20 as **
  • The role of integrin-linked kinase in melanoma cell migration, invasion, and tumor growth
    Mol Cancer Ther, Vol. 6, No. 6. (1 June 2007), pp. 1692-1700.
    by Ronald P Wong, Philip Ng, Shoukat Dedhar, Gang Li
    posted to melanoma by minostro on 2008-02-20 02:53:50 as **
  • The Role of Cadherin, beta -Catenin, and AP-1 in Retinoid-regulated Carcinoma Cell Differentiation and Proliferation
    J. Biol. Chem., Vol. 277, No. 28. (5 July 2002), pp. 25313-25322.
    by Salimuddin Shah, Michael J Pishvaian, Vijayasurian Easwaran, Powell H Brown, Stephen W Byers
    posted to melanoma by minostro on 2008-02-20 02:33:25 as **
  • B-RAF is a therapeutic target in melanoma
    Oncogene, Vol. 23, No. 37. (21 June 2004), pp. 6292-6298.
    by Maria Karasarides, Antonio Chiloeches, Robert Hayward, Dan Niculescu-Duvaz, Ian Scanlon, Frank Friedlos, Lesley Ogilvie, Douglas Hedley, Jan Martin, Christopher J Marshall, Caroline J Springer, Richard Marais
    posted to melanoma by minostro on 2008-02-19 06:19:11 as **
  • Reactive oxygen species in melanoma and its therapeutic implications.
    Melanoma Res, Vol. 17, No. 6. (December 2007), pp. 400-409.
    by HG Wittgen, LC van Kempen
    posted to melanoma by minostro on 2008-02-18 03:38:35 as **
  • Pathway aberrations of murine melanoma cells observed in Paired-End diTag transcriptomes
    BMC Cancer, Vol. 7 (26 June 2007), 109.
    by Kuo P Chiu, Pramila Ariyaratne, Han Xu, Adrian Tan, Patrick Ng, Edison, Yijun Ruan, Chia-Lin Wei, Wing-Kin KEN Sung
    posted to melanoma by minostro on 2008-02-18 03:29:37 as **
  • Integer programming models and algorithms for molecular classification of cancer from microarray data
    (2005), pp. 361-370.
    by Regina Berretta, Alexandre Mendes, Pablo Moscato
    posted to alfabeta by minostro on 2008-02-18 01:41:50 as **
  • Evolutionary Search of Thresholds for Robust Feature Set Selection: Application to the Analysis of Microarray Data
    Applications of Evolutionary Computing (2004), pp. 21-30.
    by Carlos Cotta, Christian Sloper, Pablo Moscato
    posted to alfabeta by minostro on 2008-02-18 01:39:54 as **
  • Genes Related with Alzheimer’s Disease: A Comparison of Evolutionary Search, Statistical and Integer Programming Approaches
    Applications on Evolutionary Computing (2005), pp. 84-94.
    by Pablo Moscato, Regina Berretta, Mou’ath Hourani, Alexandre Mendes, Carlos Cotta
    posted to alfabeta by minostro on 2008-02-18 01:28:33 as ** along with 1 person balicea
  • Melanoma differentiation associated gene-7 (mda-7)/IL-24: a magic bullet for cancer therapy?
    Expert Opinion on Biological Therapy, Vol. 7, No. 5. (May 2007), pp. 577-586.
    by Sarkar, Devanand, Lebedeva, V Irina, Gupta, Pankaj, Emdad, Luni, Sauane, Moira, Dent, Paul, Curiel, T David, Fisher, B Paul
    posted to melanoma by minostro on 2008-02-15 05:48:35 as **
  • The genome and epigenome of malignant melanoma
    Apmis, Vol. 115, No. 10. (October 2007), pp. 1161-1176.
    by Per Guldberg, Christina Dahl
    posted to no-tag by minostro on 2008-02-15 05:24:39 as **
  • The role of protein kinase C-alpha (PKC-alpha) in melanoma.
    Melanoma Res, Vol. 14, No. 2. (April 2004), pp. 85-89.
    by MM Lahn, KL Sundell
    posted to melanoma by minostro on 2008-02-15 04:44:52 as **
  • Proliferation of human melanoma cells is under tight control of protein kinase C alpha.
    J Cell Physiol, Vol. 199, No. 3. (June 2004), pp. 381-387.
    by K Krasagakis, C Lindschau, S Fimmel, J Eberle, P Quass, H Haller, CE Orfanos
    posted to melanoma by minostro on 2008-02-15 04:40:14 as **
  • CDC2/CDK1 expression in esophageal adenocarcinoma and precursor lesions serves as a diagnostic and cancer progression marker and potential novel drug target.
    Am J Surg Pathol, Vol. 29, No. 3. (March 2005), pp. 390-399.
    by DE Hansel, S Dhara, RC Huang, R Ashfaq, M Deasel, Y Shimada, HS Bernstein, J Harmon, M Brock, A Forastiere, MK Washington, A Maitra, E Montgomery
    posted to cdc2 melanoma by minostro on 2008-02-15 03:03:11 as **
  • Gene Expression Signatures for Tumor Progression, Tumor Subtype, and Tumor Thickness in Laser-Microdissected Melanoma Tissues
    Clin Cancer Res, Vol. 13, No. 3. (1 February 2007), pp. 806-815.
    by Jochen Jaeger, Dirk Koczan, Hans-Juergen Thiesen, Saleh M Ibrahim, Gerd Gross, Rainer Spang, Manfred Kunz
    posted to melanoma by minostro on 2008-02-15 02:59:43 as **
  • Positive selection at the protein network periphery: Evaluation in terms of structural constraints and cellular context
    Proceedings of the National Academy of Sciences (12 December 2007), pp. 20274-20279.
    by Philip M Kim, Jan O Korbel, Mark B Gerstein
    posted to centrality microarray by minostro on 2008-02-15 00:12:16 as ** along with 6 people wilbur jyuh tmmurali grahamc cjeans mingzhi
  • Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed in lung cancer tissues
    Bioinformatics, Vol. 21, No. 23. (1 December 2005), pp. 4205-4208.
    by Shinichiro Wachi, Ken Yoneda, Reen Wu
    posted to centrality microarray by minostro on 2008-02-15 00:08:28 as **
  • Exploration of biological network centralities with CentiBiN.
    BMC Bioinformatics, Vol. 7 (2006)
    by BH Junker, D Koschützki, F Schreiber
    posted to centrality microarray by minostro on 2008-02-14 03:43:58 as **
  • LSimpute: accurate estimation of missing values in microarray data with least squares methods
    Nucl. Acids Res., Vol. 32, No. 3. (20 February 2004), e34.
    by Trond H Bo, Bjarte Dysvik, Inge Jonassen
    posted to impute by minostro on 2008-02-13 05:33:00 as **
  • GATHER: a systems approach to interpreting genomic signatures.
    Bioinformatics (25 September 2006)
    by Jeffrey T T Chang, Joseph R R Nevins
    posted to gene_information by minostro on 2008-02-12 02:22:15 as ** along with 1 person jfr
  • A molecular correlate to the Gleason grading system for prostate adenocarcinoma.
    Proc Natl Acad Sci U S A, Vol. 103, No. 29. (18 July 2006), pp. 10991-10996.
    by L True, I Coleman, S Hawley, CY Huang, D Gifford, R Coleman, TM Beer, E Gelmann, M Datta, E Mostaghel, B Knudsen, P Lange, R Vessella, D Lin, L Hood, PS Nelson
    posted to microarray prostate by minostro on 2008-02-08 00:47:00 as **
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