minostro's library 65 articles Export

	Comparison of Centralities for Biological Networks [My Copy] In Proc German Conf Bioinformatics (GCB'04), Volume P-53 of LNI (2004) by Dirk Koschützki, Falk Schreiber posted to centrality by minostro on 2009-11-03 02:03:12 as
	Transitive functional annotation by shortest-path analysis of gene expression data [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 20. (1 October 2002), pp. 12783-12788. by Xianghong Zhou, Ming-Chih J. Kao, Wing H. Wong posted to shortest_path microarray by minostro on 2009-10-20 20:55:59 as along with 4 people and 1 group Borelli cswinburne shivaram lfriedl kdl
	The Database of Interacting Proteins: 2004 update [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_1. (1 January 2004), pp. D449-451. by Lukasz Salwinski, Christopher S. Miller, Adam J. Smith, Frank K. Pettit, James U. Bowie, David Eisenberg posted to protein_protein_interaction datasets by minostro on 2009-10-01 00:03:53 as along with 4 people jperkins npozo chad_davis bicko
	Localized network centrality and essentiality in the yeast protein interaction network [My Copy] PROTEOMICS, Vol. 9999, No. 999A. (2009), NA. by Keunwan Park, Dongsup Kim posted to centrality by minostro on 2009-09-30 23:00:51 as
	A computational analysis of protein-protein interaction networks in neurodegenerative diseases. [My Copy] BMC systems biology, Vol. 2, No. 1. (2008) by Joaquín Goñi, Francisco J. Esteban, Nieves Vélez V. de Mendizábal, et al.Jorge Sepulcre, Sergio Ardanza-Trevijano, Ion Agirrezabal, Pablo Villoslada posted to centrality by minostro on 2009-09-30 23:00:33 as along with 4 people renatomilani bootsy reyez AbnerCYH
	DIP: the Database of Interacting Proteins [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 289-291. by Ioannis Xenarios, Danny W. Rice, Lukasz Salwinski, Marisa K. Baron, Edward M. Marcotte, David Eisenberg posted to protein_protein_interaction datasets by minostro on 2009-08-19 23:48:57 as along with 11 people and 2 groups tienholin Cortel dragonrez imouthesmp shivaram lfriedl bigbossman bundschu grahamc ichbins81 lpfernandes kdl generif_paper
	Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. [My Copy] Nucleic acids research, Vol. 30, No. 1. (1 January 2002), pp. 207-210. by Ron Edgar, Michael Domrachev, Alex E. Lash posted to dataset microarray by minostro on 2008-12-09 13:15:04 as along with 6 people jeremymiller abhik nicholso bertelsen natstreet enzosetot
	Clustering Approaches to Identifying Gene Expression Patterns from DNA Microarray Data [My Copy] Molecules and Cells, Vol. 25, No. 2. (April 2008), pp. 279-288. by Jin H. Do, Dong-Kug Choi posted to clustering_review by minostro on 2008-11-05 16:51:14 as along with 1 person cgaugain
	NCBI GEO: mining tens of millions of expression profilesdatabase and tools update [My Copy] Nucleic Acids Research, Vol. 35, No. Supplement 1. (January 2007), pp. D760-D765. by Barrett, Tanya, Troup, et al.B. Dennis, Wilhite, E. Stephen, Ledoux, Pierre, Rudnev, Dmitry, Evangelista, Carlos, Kim, F. Irene, Soboleva, Alexandra, Tomashevsky, Maxim, Edgar, Ron posted to datasets microarray by minostro on 2008-08-20 23:39:20 as along with 5 people aviad_work frohike Borelli akastrin giovenko
	Gene ordering in microarray data using parallel memetic algorithms [My Copy] Parallel Processing, 2005. ICPP 2005 Workshops. International Conference Workshops on In Parallel Processing, 2005. ICPP 2005 Workshops. International Conference Workshops on (2005), pp. 604-611. by A. Mendes, C. Cotta, V. Garcia, P. Franca, P. Moscato posted to memetic by minostro on 2008-03-26 23:04:21 as
	A parallel memetic algorithm applied to the total tardiness machine scheduling problem [My Copy] Parallel and Distributed Processing Symposium, 2006. IPDPS 2006. 20th International In Parallel and Distributed Processing Symposium, 2006. IPDPS 2006. 20th International (2006), 8 pp.. by V. J. Garcia, P. M. Franca, Ad Mendes, P. Moscato posted to memetic by minostro on 2008-03-26 22:59:12 as
	Seahawk: moving beyond HTML in Web-based bioinformatics analysis [My Copy] BMC Bioinformatics, Vol. 8 (18 June 2007), 208. by Paul M. K. Gordon, Christoph W. Sensen posted to xml by minostro on 2008-03-26 04:50:08 as along with 8 people vijyendra Cortel daforerog druvus guhjy moborg dullhunk egonw
	Mining and analyzing the topological structure of protein-protein interaction networks [My Copy] In SAC '06: Proceedings of the 2006 ACM symposium on Applied computing (2006), pp. 185-189. by Daniel D. Wu, Xiaohua Hu posted to protein_protein_interaction by minostro on 2008-03-25 22:54:11 as
	On the structure of protein-protein interaction networks. [My Copy] Biochem Soc Trans, Vol. 31, No. Pt 6. (December 2003), pp. 1491-1496. by A. Thomas, R. Cannings, N. A. Monk, C. Cannings posted to protein_protein_interaction by minostro on 2008-03-25 22:53:43 as
	Topological structure analysis of the protein-protein interaction network in budding yeast [My Copy] Nucl. Acids Res., Vol. 31, No. 9. (1 May 2003), pp. 2443-2450. by Dongbo Bu, Yi Zhao, Lun Cai, et al.Hong Xue, Xiaopeng Zhu, Hongchao Lu, Jingfen Zhang, Shiwei Sun, Lunjiang Ling, Nan Zhang, Guojie Li, Runsheng Chen posted to protein_protein_interaction by minostro on 2008-03-25 22:53:17 as along with 6 people and 1 group jmenche lfriedl cjeans iris_2001 carlk ellakat kdl
	Microarray data analysis: from disarray to consolidation and consensus. [My Copy] Nature reviews. Genetics, Vol. 7, No. 1. (01 January 2006), pp. 55-65. by David B. Allison, Xiangqin Cui, Grier P. Page, Mahyar Sabripour posted to microarray by minostro on 2008-03-25 04:05:21 as along with 31 people and 3 groups stharward antonkratz ipark-kaist svozil bertelsen Stew daforerog winterschlaefer verdicchio guhjy barry textoris jfr Ayest balicea sterovetta lhonigberg acidwizard ronaldozhou vpschulz rmk schuylrp Garamonfok debasis GeeSharpMinor dimatura heliopais shikin giovenko jo_davies aviad_work Bioinformatics - CRUK structural_bioinformatics Bioinformatics
	Mining gene expression profiles: expression signatures as cancer phenotypes [My Copy] Nature Reviews Genetics, Vol. 8, No. 8. (03 July 2007), pp. 601-609. by Joseph R. Nevins, Anil Potti posted to cancer by minostro on 2008-03-25 03:43:01 as along with 17 people and 2 groups songpku ipark-kaist jmstat daforerog Scis0000002 zufar Zephyrus fhalbrit balicea misonneh srp33 jfr guhjy rdiaz giovanni cabbagezs dbae Roswell Cancer Crosstalk GeschwindLab
	What is bioinformatics? A proposed definition and overview of the field. [My Copy] Methods Inf Med, Vol. 40, No. 4. (2001), pp. 346-358. by N. M. Luscombe, D. Greenbaum, M. Gerstein posted to bioinformatics by minostro on 2008-03-25 00:03:03 as along with 1 person adilson_mohr
	EXPANDER--an integrative program suite for microarray data analysis. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by R. Shamir, A. Maron-Katz, A. Tanay, et al.C. Linhart, I. Steinfeld, R. Sharan, Y. Shiloh, R. Elkon posted to clustering by minostro on 2008-03-10 02:45:39 as along with 2 people gpalidwor natstreet
	CLICK and EXPANDER: a system for clustering and visualizing gene expression data. [My Copy] Bioinformatics, Vol. 19, No. 14. (22 September 2003), pp. 1787-1799. by Roded Sharan, Adi Maron-Katz, Ron Shamir posted to clustering by minostro on 2008-03-10 02:45:03 as along with 3 people meanerelk ujh maralena
	Protein arginine-methyltransferase-dependent oncogenesis [My Copy] Nature Cell Biology, Vol. 9, No. 10. (23 September 2007), pp. 1208-1215. by Ngai Cheung, Li C. Chan, Alex Thompson, Michael L. Cleary, Chi posted to prmt1_prostate by minostro on 2008-03-09 23:50:54 as
	PC-SPES inhibits cell proliferation by modulating p21, cyclins D, E and B and multiple cell cycle-related genes in prostate cancer cells. [My Copy] Cell Cycle, Vol. 2, No. 1. (b 2003), pp. 59-63. by X. Lu, J. Guo, T. C. Hsieh posted to skp1a_prostate by minostro on 2008-03-09 23:29:57 as
	Mechanisms of Disease: biomarkers and molecular targets from microarray gene expression studies in prostate cancer. [My Copy] Nat Clin Pract Urol, Vol. 4, No. 12. (December 2007), pp. 677-687. by C. S. Cooper, C. Campbell, S. Jhavar posted to prostate by minostro on 2008-03-03 00:12:49 as
	Molecular and cellular biology of prostate cancer [My Copy] Cancer and Metastasis Reviews, Vol. 16, No. 1. (1 June 1997), pp. 29-66. by El-Nasir Lalani, Marc E. Laniado, Paul D. Abel posted to prostate by minostro on 2008-03-02 23:56:55 as
	Molecular biology of prostate cancer [My Copy] Prostate Cancer Prostatic Dis, Vol. 7, No. 1. (2004), pp. 6-20. by M. K. Karayi, A. F. Markham posted to prostate by minostro on 2008-03-02 23:56:15 as
	Cyclin-dependent kinase 5 activity controls cell motility and metastatic potential of prostate cancer cells. [My Copy] Cancer Res, Vol. 66, No. 15. (1 August 2006), pp. 7509-7515. by C. J. Strock, J. I. Park, E. K. Nakakura, et al.G. S. Bova, J. T. Isaacs, D. W. Ball, B. D. Nelkin posted to cdk5_prostate by minostro on 2008-03-01 08:15:58 as
	Immunocytochemical detection of matrix metalloproteinase expression in prostate cancer. [My Copy] In Vivo, Vol. 15, No. 1. (b 2001), pp. 65-70. by B. Bodey, B. Bodey, S. E. Siegel, H. E. Kaiser posted to mmp3_prostate by minostro on 2008-02-29 04:09:59 as
	CXCL12-CXCR4 interactions modulate prostate cancer cell migration, metalloproteinase expression and invasion. [My Copy] Lab Invest, Vol. 84, No. 12. (December 2004), pp. 1666-1676. by S. Singh, U. P. Singh, W. E. Grizzle, J. W. Lillard posted to mmp3_prostate by minostro on 2008-02-29 04:06:04 as along with 1 person CCampbell00
	Expression and functional role of CCR9 in prostate cancer cell migration and invasion. [My Copy] Clin Cancer Res, Vol. 10, No. 24. (15 December 2004), pp. 8743-8750. by S. Singh, U. P. Singh, J. K. Stiles, W. E. Grizzle, J. W. Lillard posted to mmp3_prostate by minostro on 2008-02-29 04:02:45 as
	Assessment of 54 Biomarkers for Biopsy-Detectable Prostate Cancer [My Copy] Cancer Epidemiol Biomarkers Prev, Vol. 16, No. 10. (1 October 2007), pp. 1966-1972. by Dipen J. Parekh, Donna P. Ankerst, Jacques Baillargeon, et al.Betsy Higgins, Elizabeth A. Platz, Dean Troyer, Javier Hernandez, Robin J. Leach, Anna Lokshin, Ian M. Thompson posted to mmp3_prostate by minostro on 2008-02-29 03:55:18 as
	Prostate Stem Cell Antigen Is a Marker of Late Intermediate Prostate Epithelial Cells1 1 NIDDK (RFA CA-98-013) and a Department of Defense Army Research Grant (DAMD17-98-1-8578) to R.E.R. [My Copy] Molecular Cancer Research, Vol. 1, No. 2. (December 2002), pp. 113-121. by Chau P. Tran, Connie Lin, Joyce Yamashiro, Robert E. Reiter posted to ly6e_prostate by minostro on 2008-02-29 03:43:05 as along with 1 person wei
	Growth, regeneration, and tumorigenesis of the prostate activates the PSCA promoter. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 1. (8 January 2002), pp. 401-406. by T. Watabe, M. Lin, H. Ide, et al.A. A. Donjacour, G. R. Cunha, O. N. Witte, R. E. Reiter posted to ly6e_prostate by minostro on 2008-02-29 03:42:15 as
	Prostate stem cell antigen: a cell surface marker overexpressed in prostate cancer. [My Copy] Proc Natl Acad Sci U S A, Vol. 95, No. 4. (17 February 1998), pp. 1735-1740. by R. E. Reiter, Z. Gu, T. Watabe, et al.G. Thomas, K. Szigeti, E. Davis, M. Wahl, S. Nisitani, J. Yamashiro, M. M. Le Beau, M. Loda, O. N. Witte posted to ly6e_prostate by minostro on 2008-02-29 03:41:19 as along with 1 person gopal
	A gene network for navigating the literature. [My Copy] Nat Genet, Vol. 36, No. 7. (July 2004) by R. Hoffmann, A. Valencia posted to gene_information by minostro on 2008-02-29 00:37:15 as along with 10 people and 2 groups epigenetics guhjy aalibes yas benny caporaso adoms frohike Borelli beete T_lab biomedical-nlp
	A novel NIK-MAPK signaling pathway upregulates NF-kappaB activity in melanoma cells [My Copy] J. Biol. Chem. (28 December 2001), pp. 7920-7928. by Punita Dhawan, Ann Richmond posted to melanoma by minostro on 2008-02-20 03:33:06 as
	Focal Adhesion Kinase Promotes the Aggressive Melanoma Phenotype [My Copy] Cancer Res, Vol. 65, No. 21. (1 November 2005), pp. 9851-9860. by Angela R. Hess, Lynne-Marie Postovit, Naira V. Margaryan, et al.Elisabeth A. Seftor, Galen B. Schneider, Richard E. Seftor, Brian J. Nickoloff, Mary J. Hendrix posted to melanoma by minostro on 2008-02-20 03:18:58 as
	Claudin-1 overexpression in melanoma is regulated by PKC and contributes to melanoma cell motility [My Copy] Oncogene, Vol. 26, No. 26. (2007), pp. 3846-3856. by P. D. Leotlela, M. S. Wade, P. H. Duray, et al.M. J. Rhode, H. F. Brown, D. T. Rosenthal, S. K. Dissanayake, R. Earley, F. E. Indig, B. J. Nickoloff, D. D. Taub, O. P. Kallioniemi, P. Meltzer, P. J. Morin, A. T. Weeraratna posted to melanoma by minostro on 2008-02-20 03:10:59 as
	Evidence for involvement of Wnt signaling pathway in IB-MECA mediated suppression of melanoma cells [My Copy] Oncogene, Vol. 21, No. 25. (6 June 2002), pp. 4060-4064. by Pnina Fishman, Lea Madi, Sara Bar-Yehuda, Faina Barer, Luis Delvalle, Kamel Khalili posted to melanoma by minostro on 2008-02-20 03:02:46 as
	Increased Expression of Integrin-Linked Kinase Is Correlated with Melanoma Progression and Poor Patient Survival [My Copy] Clin Cancer Res, Vol. 9, No. 12. (1 October 2003), pp. 4409-4414. by Derek L. Dai, Nikita Makretsov, Eric I. Campos, et al.Changzheng Huang, Youwen Zhou, David Huntsman, Madgalena Martinka, Gang Li posted to melanoma by minostro on 2008-02-20 02:55:20 as
	The role of integrin-linked kinase in melanoma cell migration, invasion, and tumor growth [My Copy] Mol Cancer Ther, Vol. 6, No. 6. (1 June 2007), pp. 1692-1700. by Ronald P. Wong, Philip Ng, Shoukat Dedhar, Gang Li posted to melanoma by minostro on 2008-02-20 02:53:50 as
	The Role of Cadherin, beta -Catenin, and AP-1 in Retinoid-regulated Carcinoma Cell Differentiation and Proliferation [My Copy] J. Biol. Chem., Vol. 277, No. 28. (5 July 2002), pp. 25313-25322. by Salimuddin Shah, Michael J. Pishvaian, Vijayasurian Easwaran, Powell H. Brown, Stephen W. Byers posted to melanoma by minostro on 2008-02-20 02:33:25 as
	B-RAF is a therapeutic target in melanoma [My Copy] Oncogene, Vol. 23, No. 37. (21 June 2004), pp. 6292-6298. by Maria Karasarides, Antonio Chiloeches, Robert Hayward, et al.Dan Niculescu-Duvaz, Ian Scanlon, Frank Friedlos, Lesley Ogilvie, Douglas Hedley, Jan Martin, Christopher J. Marshall, Caroline J. Springer, Richard Marais posted to melanoma by minostro on 2008-02-19 06:19:11 as
	Reactive oxygen species in melanoma and its therapeutic implications. [My Copy] Melanoma Res, Vol. 17, No. 6. (December 2007), pp. 400-409. by H. G. Wittgen, L. C. van Kempen posted to melanoma by minostro on 2008-02-18 03:38:35 as
	Pathway aberrations of murine melanoma cells observed in Paired-End diTag transcriptomes [My Copy] BMC Cancer, Vol. 7 (26 June 2007), 109. by Kuo P. Chiu, Pramila Ariyaratne, Han Xu, et al.Adrian Tan, Patrick Ng, Edison, Yijun Ruan, Chia-Lin Wei, Wing-Kin K. E. N. Sung posted to melanoma by minostro on 2008-02-18 03:29:37 as
	Integer programming models and algorithms for molecular classification of cancer from microarray data [My Copy] In ACSC '05: Proceedings of the Twenty-eighth Australasian conference on Computer Science (2005), pp. 361-370. by Regina Berretta, Alexandre Mendes, Pablo Moscato posted to alfabeta by minostro on 2008-02-18 01:41:50 as
	Evolutionary Search of Thresholds for Robust Feature Set Selection: Application to the Analysis of Microarray Data [My Copy] Applications of Evolutionary Computing (2004), pp. 21-30. by Carlos Cotta, Christian Sloper, Pablo Moscato posted to alfabeta by minostro on 2008-02-18 01:39:54 as
	Genes Related with Alzheimer’s Disease: A Comparison of Evolutionary Search, Statistical and Integer Programming Approaches [My Copy] Applications on Evolutionary Computing (2005), pp. 84-94. by Pablo Moscato, Regina Berretta, Mou’ath Hourani, Alexandre Mendes, Carlos Cotta posted to alfabeta by minostro on 2008-02-18 01:28:33 as along with 1 person balicea
	Melanoma differentiation associated gene-7 (mda-7)/IL-24: a magic bullet for cancer therapy? [My Copy] Expert Opinion on Biological Therapy, Vol. 7, No. 5. (May 2007), pp. 577-586. by Sarkar, Devanand, Lebedeva, et al.V. Irina, Gupta, Pankaj, Emdad, Luni, Sauane, Moira, Dent, Paul, Curiel, T. David, Fisher, B. Paul posted to melanoma by minostro on 2008-02-15 05:48:35 as
	The genome and epigenome of malignant melanoma [My Copy] Apmis, Vol. 115, No. 10. (October 2007), pp. 1161-1176. by Per Guldberg, Christina Dahl posted to no-tag by minostro on 2008-02-15 05:24:39 as
	The role of protein kinase C-alpha (PKC-alpha) in melanoma. [My Copy] Melanoma Res, Vol. 14, No. 2. (April 2004), pp. 85-89. by M. M. Lahn, K. L. Sundell posted to melanoma by minostro on 2008-02-15 04:44:52 as

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melanoma	16
microarray	9
centrality	6
protein_protein_interaction	5
mmp3_prostate	4
prostate	4
alfabeta	3
datasets	3
ly6e_prostate	3
clustering	2
clustering_review	2
distancemeasure	2
gene_information	2
memetic	2
bioinformatics	1
cancer	1
cdc2	1
cdk5_prostate	1
clustering_evaluation	1
dataset	1
dna_shuffle	1
impute	1
prmt1_prostate	1
shortest_path	1
skp1a_prostate	1
xml	1

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