mitko's library 123 articles Export

	Extraction of human kinase mutations from literature, databases and genotyping studies. [My Copy] BMC bioinformatics, Vol. 10 Suppl 8, No. Suppl 8. (2009), S1. by Martin Krallinger, Jose M. Izarzugaza, Carlos Rodriguez-Penagos, Alfonso Valencia posted to text-mining mutations information-extraction bioinformatics by mitko on 2009-10-09 12:07:48 as along with 3 people daforerog artaban421 lmichan
	Autism genetic database (AGD): a comprehensive database including autism susceptibility gene-CNVs integrated with known noncoding RNAs and fragile sites [My Copy] BMC Medical Genetics, Vol. 10, No. 1. (2009), 102. by Gregory Matuszek, Zohreh Talebizadeh posted to genetic_database candidate-gene-discovery autism by mitko on 2009-10-01 12:43:31 as along with 1 person daforerog
	Reflective Random Indexing and Indirect Inference: A Scalable Method for Discovery of Implicit Connections [My Copy] Journal of Biomedical Informatics (15 September 2009) by Trevor Cohen, Roger Schvaneveldt, Dominic Widdows posted to text-mining literature-based-discovery by mitko on 2009-09-25 14:32:46 as
	Mining functional information associated with expression arrays. [My Copy] Functional & integrative genomics, Vol. 1, No. 4. (March 2001), pp. 256-268. by C. Blaschke, J. C. Oliveros, A. Valencia posted to text-mining microarrays bioinformatics by mitko on 2009-09-22 14:46:12 as along with 1 person biblio24
	Literature Mining: Towards Better Understanding of Autism [My Copy] Artificial Intelligence in Medicine (2007), pp. 217-226. by Tanja Urbančič, Ingrid Petrič, Bojan Cestnik, Marta Macedoni-Lukšič posted to text-mining literature-based-discovery autism by mitko on 2009-09-22 14:32:43 as along with 1 person djsaab
	Pharmspresso: a text mining tool for extraction of pharmacogenomic concepts and relationships from full text. [My Copy] BMC bioinformatics, Vol. 10 Suppl 2 (2009) by Yael Garten, Russ B. Altman posted to text-mining pharmacogenomics by mitko on 2009-09-22 14:24:25 as along with 6 people and 1 group fisherp dullhunk liblab Effie zimbo1 guhjy NaCTeM
	Textpresso: an ontology-based information retrieval and extraction system for biological literature. [My Copy] PLoS Biology, Vol. 2, No. 11. (November 2004) by H. M. Müller, E. E. Kenny, P. W. Sternberg posted to textpresso text-mining by mitko on 2009-09-22 14:23:05 as along with 16 people and 4 groups artaban421 thegoose2 liblab tharris irenas Enro guhjy yas dullhunk hpiwowar fisherp zlu daniel_schober diogomartins mroos vlachmore C. elegans / WormBase dbk-lab T_lab AID
	Content-rich biological network constructed by mining PubMed abstracts [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (8 October 2004), 147. by Hao Chen, Burt Sharp posted to text-mining natural-language-processing micro-arrays literature-based-discovery bioinformatics by mitko on 2009-09-22 14:19:43 as along with 10 people and 3 groups gavinhoran cisevol snuppepuppan irenas Enro BioGeek fisherp jeremymiller daniel_schober adoms BergmanLab dbk-lab GeschwindLab
	Anni 2.0: a multipurpose text-mining tool for the life sciences [My Copy] Genome Biology, Vol. 9, No. 6. (2008) by Rob Jelier, Martijn Schuemie, Antoine Veldhoven, Lambert Dorssers, Guido Jenster, Jan Kors posted to text-mining microarrays literature-based-discovery bioinformatics by mitko on 2009-09-22 14:12:52 as along with 8 people henk-cul robjelier barriot reyez dullhunk Gaetan fpattyn guhjy
	Analysis of alpha-synuclein, dopamine and parkin pathways in neuropathologically confirmed parkinsonian nigra. [My Copy] Acta neuropathologica, Vol. 113, No. 3. (March 2007), pp. 253-263. by L. B. Moran, E. Croisier, D. C. Duke, et al.M. E. Kalaitzakis, F. Roncaroli, M. Deprez, D. T. Dexter, R. K. Pearce, M. B. Graeber posted to pathways parkinson candidate-gene-discovery by mitko on 2009-09-09 16:22:16 as
	Towards a pathway definition of Parkinson's disease: a complex disorder with links to cancer, diabetes and inflammation. [My Copy] Neurogenetics, Vol. 9, No. 1. (February 2008), pp. 1-13. by Linda B. Moran, Manuel B. Graeber posted to pathways parkinson microarrays by mitko on 2009-09-09 16:15:57 as along with 1 person daforerog
	Gene expression profiling of substantia nigra dopamine neurons: further insights into Parkinson's disease pathology. [My Copy] Brain : a journal of neurology, Vol. 132, No. Pt 7. (3 July 2009), pp. 1795-1809. by Filip Simunovic, Ming Yi, Yulei Wang, et al.Laurel Macey, Lauren T. Brown, Anna M. Krichevsky, Susan L. Andersen, Robert M. Stephens, Francine M. Benes, Kai C. Sonntag posted to parkinson microarrays by mitko on 2009-09-09 16:11:23 as along with 1 person daforerog
	Whole genome expression profiling of the medial and lateral substantia nigra in Parkinson's disease. [My Copy] Neurogenetics, Vol. 7, No. 1. (28 March 2006), pp. 1-11. by L. B. Moran, D. C. Duke, M. Deprez, D. T. Dexter, R. K. Pearce, M. B. Graeber posted to parkinson microarrays by mitko on 2009-09-09 16:04:46 as along with 2 people jeremymiller daforerog
	ITM Probe: analyzing information flow in protein networks [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2447-2449. by Aleksandar Stojmirovic, Yi-Kuo Yu posted to protein-protein-interaction network-analysis bioinformatics by mitko on 2009-09-07 13:43:24 as
	dictyExpress: a Dictyostelium discoideum gene expression database with an explorative data analysis web-based interface [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 265. by Gregor Rot, Anup Parikh, Tomaz Curk, Adam Kuspa, Gad Shaulsky, Blaz Zupan posted to micro-arrays bioinformatics by mitko on 2009-08-31 12:08:24 as along with 4 people eudominguezmartin bfish druvus ngehlenborg
	A realistic assessment of methods for extracting gene/protein interactions from free text. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (28 July 2009), 233. by Renata Kabiljo, Andrew B. Clegg, Adrian J. Shepherd posted to text-mining information-extraction evaluation bioinformatics by mitko on 2009-08-11 13:52:16 as along with 11 people and 4 groups henk-cul martingerner DTD102 satre farzanehs grahamc sjcockell sillitoe andrewclegg cisevol barriot dbmi-nlp Journal picks Orengo Group Journal Picks BergmanLab
	Mild hypercholesterolemia is an early risk factor for the development of Alzheimer amyloid pathology. [My Copy] Neurology, Vol. 61, No. 2. (22 July 2003), pp. 199-205. by M. A. Pappolla, T. K. Bryant-Thomas, D. Herbert, et al.J. Pacheco, M. Fabra Garcia, M. Manjon, X. Girones, T. L. Henry, E. Matsubara, D. Zambon, B. Wolozin, M. Sano, F. F. Cruz-Sanchez, L. J. Thal, S. S. Petanceska, L. M. Refolo posted to alzheimer cholesterol by mitko on 2009-08-06 09:55:22 as
	Lipoproteins, vascular-related genetic factors, and human longevity. [My Copy] Rejuvenation research, Vol. 10, No. 4. (December 2007), pp. 441-458. by Francesco Panza, Alessia D'introno, Cristiano Capurso, et al.Anna Maria M. Colacicco, Davide Seripa, Alberto Pilotto, Andrea Santamato, Antonio Capurso, Vincenzo Solfrizzi posted to alzheimer by mitko on 2009-08-06 09:51:09 as along with 1 person daforerog
	Impaired insulin secretion increases the risk of Alzheimer disease. [My Copy] Neurology, Vol. 71, No. 14. (30 September 2008), pp. 1065-1071. by E. Rönnemaa, B. Zethelius, J. Sundelöf, et al.J. Sundström, M. Degerman-Gunnarsson, C. Berne, L. Lannfelt, L. Kilander posted to alzheimer diabetes insulin by mitko on 2009-08-06 09:48:46 as
	Cholesterol as a risk factor for dementia and cognitive decline: a systematic review of prospective studies with meta-analysis. [My Copy] The American journal of geriatric psychiatry : official journal of the American Association for Geriatric Psychiatry, Vol. 16, No. 5. (1 May 2008), pp. 343-354. by Kaarin J. Anstey, Darren M. Lipnicki, Lee-Fay F. Low posted to alzheimer cholesterol by mitko on 2009-08-06 09:46:06 as along with 1 person applebyb
	Higher Serum Total Cholesterol Levels in Late Middle Age are Associated with Glucose Hypometabolism in Brain Regions Affected by Alzheimer's Disease and Normal Aging. [My Copy] NeuroImage (22 July 2009) by Eric M. Reiman, Kewei Chen, Jessica B. Langbaum, et al.Wendy Lee, Cole Reschke, Daniel Bandy, Gene E. Alexander, Richard J. Caselli posted to alzheimer cholesterol by mitko on 2009-08-06 09:44:24 as
	Midlife Serum Cholesterol and Increased Risk of Alzheimer's and Vascular Dementia Three Decades Later. [My Copy] Dementia and geriatric cognitive disorders, Vol. 28, No. 1. (4 August 2009), pp. 75-80. by Alina Solomon, Miia Kivipelto, Benjamin Wolozin, Jufen Zhou, Rachel A. Whitmer posted to alzheimer cholesterol by mitko on 2009-08-06 09:41:26 as
	How evolutionary algorithms are applied to statistical natural language processing [My Copy] Artificial Intelligence Review, Vol. 28, No. 4. (1 December 2007), pp. 275-303. by Lourdes Araujo posted to evolutionary-algorithms natural-language-processing text-mining by mitko on 2009-07-31 15:42:12 as along with 1 person briordan
	Argument-predicate distance as a filter for enhancing precision in extracting predications on the genetic etiology of disease. [My Copy] BMC bioinformatics, Vol. 7 (08 June 2006), 291. by M. Masseroli, H. Kilicoglu, F. M. Lang, T. C. Rindflesch posted to bioinformatics literature-based-discovery natural-language-processing semantic text-mining by mitko on 2009-07-29 11:10:52 as along with 4 people and 3 groups henk-cul hpiwowar bundschu dejori dbmi-nlp ic4 generif_paper
	Automated genome mining for natural products [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 185. by Michael Li, Peter Ung, James Zajkowski, Sylvie G. Tsodikova, David Sherman posted to drug-discovery text-mining by mitko on 2009-07-27 11:03:12 as along with 6 people bcondon orzenil gillianturgeon operon erexhepa neils
	PLAN2L: a web tool for integrated text mining and literature-based bioentity relation extraction. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009) by M. Krallinger, C. Rodriguez-Penagos, A. Tendulkar, A. Valencia posted to bioinformatics information-extraction text-mining by mitko on 2009-07-27 10:59:10 as along with 2 people liblab guhjy
	U-Compare: share and compare text mining tools with UIMA [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1997-1998. by Yoshinobu Kano, William A. Baumgartner, Luke Mccrohon, et al.Sophia Ananiadou, K. Bretonnel Cohen, Lawrence Hunter, Jun'ichi Tsujii posted to bioinformatics evaluation text-mining by mitko on 2009-07-27 10:47:51 as along with 11 people and 2 groups artaban421 fgibson satre lmichan daforerog martingerner operon guhjy henk-cul dullhunk Effie dbmi-nlp NaCTeM
	Linking genes to literature: text mining, information extraction, and retrieval applications for biology [My Copy] Genome Biology, Vol. 9, No. Suppl 2. (2008), S8. by Martin Krallinger, Alfonso Valencia, Lynette Hirschman posted to bioinformatics information-extraction text-mining by mitko on 2009-07-08 10:27:17 as along with 13 people and 1 group artaban421 druvus satre daforerog liblab lmichan aberamanda henk-cul Alois guhjy dullhunk bouncingbudha goettl dbmi-nlp
	Empirical distributional semantics: methods and biomedical applications. [My Copy] Journal of biomedical informatics, Vol. 42, No. 2. (13 April 2009), pp. 390-405. by Trevor Cohen, Dominic Widdows posted to natural-language-processing semantic text-mining by mitko on 2009-07-08 10:21:22 as along with 4 people and 1 group henk-cul briordan vlachmore dullhunk dbmi-nlp
	SuperTarget and Matador: resources for exploring drug-target relationships. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (16 January 2008) by S. Günther, M. Kuhn, M. Dunkel, et al.M. Campillos, C. Senger, E. Petsalaki, J. Ahmed, E. G. Urdiales, A. Gewiess, L. J. Jensen, R. Schneider, R. Skoblo, R. B. Russell, P. E. Bourne, P. Bork, R. Preissner posted to bioinformatics drug-discovery text-mining by mitko on 2009-07-06 10:14:25 as along with 8 people dansullivanblk zimbo1 guhjy mdimmic daevans massivemayhem Evangelia larsjuhljensen
	STRING 8--a global view on proteins and their functional interactions in 630 organisms [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D412-416. by Lars J. Jensen, Michael Kuhn, Manuel Stark, et al.Samuel Chaffron, Chris Creevey, Jean Muller, Tobias Doerks, Philippe Julien, Alexander Roth, Milan Simonovic, Peer Bork, Christian von Mering posted to bioinformatics databases network-analysis protein-protein-interaction text-mining by mitko on 2009-07-06 10:07:39 as along with 15 people and 1 group carlk ilyashl hagechouchin443 lptolik kshameer allysonlister chad_davis larsjuhljensen druvus guhjy renatomilani grahamc behindtherabbit kgutwin biehl Bioinformatics
	The efficiency of multi-target drugs: the network approach might help drug design. [My Copy] Trends in pharmacological sciences, Vol. 26, No. 4. (April 2005), pp. 178-182. by P. Csermely, V. Agoston, S. Pongor posted to drug-discovery network-analysis by mitko on 2009-07-06 09:49:42 as
	Large-scale prediction of drug-target relationships. [My Copy] FEBS letters, Vol. 582, No. 8. (9 April 2008), pp. 1283-1290. by M. Kuhn, M. Campillos, P. González, L. J. Jensen, P. Bork posted to drug-discovery literature-based-discovery by mitko on 2009-07-06 09:35:48 as along with 3 people daforerog larsjuhljensen tjimenez
	Drug Target Identification Using Side-Effect Similarity [My Copy] Science, Vol. 321, No. 5886. (11 July 2008), pp. 263-266. by Monica Campillos, Michael Kuhn, Anne-Claude Gavin, Lars J. Jensen, Peer Bork posted to bioinformatics drug-discovery text-mining by mitko on 2009-07-06 09:25:46 as along with 17 people anthropomorphism npt11tpn mingzhi TRHvidsten dullhunk jfr zimbo1 bpcusack jmuhlich aheilbut larsjuhljensen tmmurali askrajiv reyez roys ajaymalik raiyar
	Bayesian learning of Bayesian networks with informative priors [My Copy] Annals of Mathematics and Artificial Intelligence by Nicos Angelopoulos, James Cussens posted to bayesian-networks machine-learning prior-knowledge by mitko on 2009-07-06 08:43:49 as
	Hairpins in bookstacks: Information retrieval from biomedical text [My Copy] Brief Bioinform, Vol. 6, No. 3. (1 January 2005), pp. 222-238. by Hagit Shatkay posted to bioinformatics literature-based-discovery text-mining by mitko on 2009-06-19 17:01:44 as along with 7 people and 4 groups artaban421 eesruiz svozil henk-cul guhjy yas hpiwowar ImagCom - Biomedical Text Computing Bioinformatics dbmi-nlp T_lab
	Textual Data Compression In Computational Biology: A synopsis. [My Copy] Bioinformatics (Oxford, England) (3 March 2009) by Raffaele Giancarlo, Davide Scaturro, Filippo Utro posted to bioinformatics compression text-mining by mitko on 2009-06-19 10:29:23 as along with 3 people reyez nuin guhjy
	A global meta-analysis of microarray expression data to predict unknown gene functions and estimate the literature-data divide. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 13. (1 July 2009), pp. 1694-1701. by Jonathan D. Wren posted to bioinformatics micro-arrays text-mining by mitko on 2009-06-19 10:23:01 as along with 10 people and 2 groups jfr jperkins fenghezi guhjy renatomilani VGreiff dswan TRHvidsten daforerog shikin Orengo Group Journal Picks Bioinformatics
	Mining microarray expression data by literature profiling. [My Copy] Genome Biol, Vol. 3, No. 10. (13 September 2002) by D. Chaussabel, A. Sher posted to bioinformatics micro-arrays text-mining by mitko on 2009-06-18 08:37:10 as along with 1 person incovoma
	Knowledge discovery in biology and biotechnology texts: a review of techniques, evaluation strategies, and applications. [My Copy] Critical reviews in biotechnology, Vol. 25, No. 1-2. (n 2005), pp. 31-52. by J. Natarajan, D. Berrar, C. J. Hack, W. Dubitzky posted to bioinformatics text-mining by mitko on 2009-06-18 08:19:45 as along with 2 people and 1 group svozil lmichan Bioinformatics
	Mining the biomedical literature in the genomic era: an overview. [My Copy] J Comput Biol, Vol. 10, No. 6. (2003), pp. 821-855. by H. Shatkay, R. Feldman posted to bioinformatics text-mining by mitko on 2009-06-18 08:17:16 as along with 12 people and 3 groups artaban421 lmichan henk-cul cisevol irenas Enro miguel yas benny balex adoms aheilbut BergmanLab dbk-lab T_lab
	Conceptual biology, hypothesis discovery, and text mining: Swanson's legacy [My Copy] Biomedical Digital Libraries, Vol. 3, No. 1. (03 April 2006), 2. by Tanja Bekhuis posted to literature-based-discovery text-mining by mitko on 2009-06-18 08:08:44 as along with 6 people and 3 groups lmichan guhjy irenas Enro yas JeffreyDemaine dbk-lab T_lab CISTI-Research
	Constructing biological networks through combined literature mining and microarray analysis: a LMMA approach [My Copy] Bioinformatics, Vol. 22, No. 17. (1 September 2006), pp. 2143-2150. by Shao Li, Lijiang Wu, Zhongqi Zhang posted to bioinformatics micro-arrays text-mining by mitko on 2009-06-11 07:59:41 as along with 3 people ptrobajo guhjy yas
	Biomedical ontologies: a functional perspective [My Copy] Brief Bioinform, Vol. 9, No. 1. (1 January 2008), pp. 75-90. by Daniel L. Rubin, Nigam H. Shah, Natalya F. Noy posted to bioinformatics ontologies by mitko on 2009-06-10 15:07:11 as along with 11 people and 1 group druvus vkwn daforerog bertelsen guhjy jfr dullhunk RockHI wchapman dansullivanblk sgoetz dbmi-nlp
	Ontology-driven indexing of public datasets for translational bioinformatics [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 2. (2009), S1. by Nigam Shah, Clement Jonquet, Annie Chiang, Atul Butte, Rong Chen, Mark Musen posted to annotation bioinformatics geo micro-arrays ontologies umls by mitko on 2009-06-10 15:02:36 as along with 5 people and 1 group guhjy fordparsons Effie daforerog gilesvelarde NaCTeM
	Application and evaluation of automated semantic annotation of gene expression experiments. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. 1543-1549. by Leon French, Suzanne Lane, Tamryn Law, Lydia Xu, Paul Pavlidis posted to annotation bioinformatics micro-arrays semantic by mitko on 2009-06-10 14:55:01 as along with 3 people jfr shikin guhjy
	Using ontologies linked with geometric models to reason about penetrating injuries. [My Copy] Artificial intelligence in medicine, Vol. 37, No. 3. (July 2006), pp. 167-176. by D. L. Rubin, O. Dameron, Y. Bashir, D. Grossman, P. Dev, M. A. Musen posted to ontologies by mitko on 2009-06-10 14:51:07 as along with 1 person yggdrasil
	Identifying gene-disease associations using centrality on a literature mined gene-interaction network [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i277-285. by Arzucan Ozgur, Thuy Vu, Gunes Erkan, Dragomir R. Radev posted to bioinformatics candidate-gene-discovery literature-based-discovery by mitko on 2009-06-08 09:25:38 as along with 5 people suzhan saket yyby maralena guhjy
	Automated Semantic Indexing of Figure Captions to Improve Radiology Image Retrieval [My Copy] Journal of the American Medical Informatics Association, Vol. 16, No. 3., pp. 380-386. by C. E. Kahn, D. L. Rubin posted to image-retrieval information-extraction by mitko on 2009-06-03 10:38:35 as
	SNAVI: Desktop application for analysis and visualization of large-scale signaling networks. [My Copy] BMC systems biology, Vol. 3, No. 1. (2009) by A. Ma'ayan, S. L. Jenkins, R. L. Webb, et al.S. I. Berger, S. P. Purushothaman, N. S. Abul-Husn, J. M. Posner, T. Flores, R. Iyengar posted to bioinformatics network visualization by mitko on 2009-06-03 10:07:35 as along with 5 people guhjy fgibson dswan renatomilani cmzmasek

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bioinformatics	54
text-mining	51
literature-based-discovery	36
micro-arrays	16
candidate-gene-discovery	9
alzheimer	7
drug-discovery	7
data-integration	6
information-extraction	6
microarrays	6
natural-language-processing	5
ontologies	5
parkinson	5
semantic	5
cholesterol	4
data-mining	4
annotation	3
autism	3
databases	3
integrative-genomics	3
knowledge-discovery	3
mesh	3
network-analysis	3
classification	2
disambiguation	2
evaluation	2
gene-ontology	2
network	2
pathways	2
protein-protein-interaction	2
software	2
umls	2
visualization	2
abbreviation	1
amigo	1
asscotiation-rules	1
bayesian-networks	1
bibliometrics	1
biochemical-pathways	1
biomarkers	1
clustering	1
compression	1
diabetes	1
discovery	1
evolutionary-algorithms	1
extraction	1
function	1
genetic_database	1
geo	1
graphs	1
hadoop	1
image-retrieval	1
information-retrieval	1
insulin	1
machine-learning	1
mapreduce	1
multi-dimensional	1
mutations	1
pharmacogenomics	1
prediction	1
prior-knowledge	1
protein	1
protein-function-prediction	1
pubmed	1
query-expansion	1
relation	1
semantic-classification	1
semantic-mashup	1
semantic-web	1
simulation	1
sleep	1
standards	1
swissprot	1
temporal	1
textpresso	1

mitko's library 123 articles Export

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