mjoach's library 209 articles Export

	Network topology and the evolution of dynamics in an artificial genetic regulatory network model created by whole genome duplication and divergence. [My Copy] Bio Systems, Vol. 85, No. 3. (September 2006), pp. 177-200. by P. Dwight Kuo, W. Banzhaf, A. Leier posted to topology properties grn evolution analysis alife by mjoach on 2009-10-23 12:07:30 as along with 4 people and 1 group rebeccamancy dlobo adamnellis madhadron GEB
	Using the principle of entropy maximization to infer genetic interaction networks from gene expression patterns [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 50. (12 December 2006), pp. 19033-19038. by Timothy R. Lezon, Jayanth R. Banavar, Marek Cieplak, Amos Maritan, Nina V. Fedoroff posted to grn analysis by mjoach on 2009-10-13 13:01:34 as along with 8 people TRHvidsten tmmurali yaredo jfr aswin hmk iris_2001 macavity1g
	Developing and Testing Methods for Microarray Data Analysis Using an Artificial Life Framework [My Copy] Advances in Artificial Life (2003), pp. 686-695. by Dirk Repsilber, Jan T. Kim posted to simulation microarray grn alife by mjoach on 2009-10-13 12:27:35 as
	Zoology: Sex with a twist [My Copy] Nature, Vol. 456, No. 7220. (19 November 2008), pp. 285-285. posted to symmetry snails sex morphology external by mjoach on 2009-10-13 12:25:55 as
	Network motifs: theory and experimental approaches [My Copy] Nature Reviews Genetics, Vol. 8, No. 6. (01 June 2007), pp. 450-461. by Uri Alon posted to motfis grn by mjoach on 2009-10-13 12:21:31 as along with 32 people and 4 groups Katieleonard nurban vtraag mlee1 myzhang hkuhn mtagaya cambray dswan renatomilani heliopais snow_dragon druvus pengchy cswinburne dlobo kentz icases aalibes cmmorel jtaylor dbikard margaritis shigepong zwang grinfish Pascalichouchou xingxu karfunkel vietanh0 haarcuba Borelli GEB TNT Centre de Recherches Interdisciplinaires SynBioSys
	Gene regulatory networks and the evolution of animal body plans. [My Copy] Science, Vol. 311, No. 5762. (10 February 2006), pp. 796-800. by E. H. Davidson, D. H. Erwin posted to grn evolution body-plan by mjoach on 2009-10-13 12:21:14 as along with 20 people and 5 groups dlobo anphony qwermish sWorgan Lauren_Jones eldan bayesian dpollard xico dchughes brixtonmc Liusha margaritis josepe cjeans sujaikumar Garamonfok jtomasch Ema natstreet GEB EisenLab WetBiology G4ID Genetics-of-Gambling
	Shadow Enhancers as a Source of Evolutionary Novelty [My Copy] Science, Vol. 321, No. 5894. (5 September 2008), 1314. by Joung-Woo Hong, David A. Hendrix, Michael S. Levine posted to novelty grn evolution by mjoach on 2009-10-13 12:21:03 as along with 16 people and 4 groups daveGerrard cisevol jfr rouault emptyhb dlobo sebastien_vigneau Stew bpcusack Ema Zephyrus djkt natstreet isimpson maximilianh caseybrown BergmanLab TranscriptionalRegulationWithThermodynamicModels GEB Roswell Cancer Crosstalk
	Modeling and Simulation of Genetic Regulatory Systems: A Literature Review [My Copy] Journal of Computational Biology, Vol. 9, No. 1. (January 2002), pp. 67-103. by Hidde de Jong posted to modelling grn by mjoach on 2009-10-13 12:20:53 as along with 27 people and 6 groups Borelli qluo antonkratz reyez tlse65 wangbo dlobo jago behindtherabbit cswinburne ggallone softsimu eldan tmmurali bayesian balicea Happybene wnpx kengg noano sstoma josepe dagmar jo_davies roys maburkitt phoenixzxl smac GEB Jarman Lab VirtualPlants Plantandetc compneur
	Network Motifs: Simple Building Blocks of Complex Networks [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 824-827. by R. Milo, S. Shen-Orr, S. Itzkovitz, N. Kashtan, D. Chklovskii, U. Alon posted to motfis grn analysis by mjoach on 2009-10-13 12:20:45 as along with 70 people and 10 groups Sergey_gerbek nurban balabu ocs makrehchi schwartzjmc poirel tomhebbron arsyed vtraag sergiun fierykylin Akimasa operon dlobo daforerog chasmand wei_tang darian orahcio babakap brewbooks phoenixzxl Md_2007 mtagaya heliopais kaarsinogen galyardt cswinburne mullonc camster korakot aalibes ChaTo imouthesmp Borelli lfriedl alexg balicea tny ssb wnpx ddahlem cmm donade neveaire griota gurkanbebek jtaylor josepe iris_2001 michaelmampaey rebeccamancy karfunkel lenov Evangelia roys tfogal zibuyu maralena stefanoallesina pbull cmor renatomilani shikin carlk applesnow subhacom i-stevenson ethkim complex networks GEB Philosophy_of_Information dbk-lab Blog_and_Wiki_Research kdl FAB-lab ColDyn ADMiRes GeneGo
	A Computational Morphogenesis Approach to Simple Structure Development [My Copy] Advances in Artificial Life (2007), pp. 825-834. by Enrique Fernández-Blanco, Julián Dorado, Juan Rabuñal, Marcos Gestal, And Pedreira posted to grn grid embryogeny alife by mjoach on 2009-10-06 15:42:11 as along with 1 person and 1 group dlobo GEB
	The role of lateral inhibition in the sensory processing in a simulated spiking neural controller for a robot [My Copy] Artificial Life, 2009. ALife '09. IEEE Symposium on (15 May 2009), pp. 179-183. by D. Bowes, R. Adams, L. Canamero, V. Steuber, N. Davey posted to spiking neural-net alife by mjoach on 2009-10-02 18:22:25 as
	Monte Carlo analysis of an ODE Model of the Sea Urchin Endomesoderm Network. [My Copy] BMC systems biology, Vol. 3, No. 1. (2009), 83. by Clemens Kühn, Christoph Wierling, Alexander Kühn, et al.Edda Klipp, Georgia Panopoulou, Hans Lehrach, Albert J. Poustka posted to grn analysis by mjoach on 2009-10-02 18:17:56 as along with 3 people reyez agonzale abhishek_tiwari
	Evolution of bilateral symmetry in agents controlled by spiking neural networks [My Copy] Artificial Life, 2009. ALife '09. IEEE Symposium on (15 May 2009), pp. 116-123. by N. Oros, V. Steuber, N. Davey, L. Canamero, R. Adams posted to neural-net morphology evolution body-brain by mjoach on 2009-10-02 18:04:23 as
	Shape homeostasis in virtual embryos [My Copy] Artif. Life, Vol. 15, No. 2. (14 January 2009), pp. 161-183. by Tim Andersen, Richard Newman, Tim Otter posted to grn embryogenesis development alife by mjoach on 2009-09-29 11:03:18 as along with 1 person and 1 group dlobo GEB
	In Retrospect: Lamarck's treatise at 200 [My Copy] Nature, Vol. 460, No. 7256. (6 August 2009), pp. 688-689. by Dan Graur, Manolo Gouy, David Wool posted to misconceptions lamarck evolution by mjoach on 2009-08-13 10:51:12 as along with 1 person bayesian
	Metamorphosis of a Scleractinian Coral in Response to Microbial Biofilms [My Copy] Appl. Environ. Microbiol., Vol. 70, No. 2. (1 February 2004), pp. 1213-1221. by Nicole S. Webster, Luke D. Smith, Andrew J. Heyward, et al.Joy E. M. Watts, Richard I. Webb, Linda L. Blackall, Andrew P. Negri posted to development external inducing morphogenes by mjoach on 2009-08-07 15:37:05 as
	Gene regulatory network inference: Data integration in dynamic models—A review [My Copy] Biosystems, Vol. 96, No. 1. (27 April 2009), pp. 86-103. by Michael Hecker, Sandro Lambeck, Susanne Toepfer, Eugene van Someren, Reinhard Guthke posted to grn reconstruction systems-biology by mjoach on 2009-08-04 10:41:24 as along with 7 people nicholasflann antonkratz greg guhjy bertelsen sjung allysonlister
	Gene Regulatory Network Reconstruction - Best Practise Guide [My Copy] by Michael Hecker posted to grn reconstruction systems-biology by mjoach on 2009-08-04 10:35:25 as
	Introduction to systems biology [My Copy] (2007) by Sangdun Choi posted to grn reconstruction systems-biology by mjoach on 2009-08-02 11:29:07 as
	Reconstructing gene regulatory networks: from random to scale-free connectivity [My Copy] Systems Biology, IEE Proceedings In Systems Biology, IEE Proceedings, Vol. 153, No. 4. (2006), pp. 247-256. by J. Wildenhain, E. J. Crampin posted to grn reconstruction systems-biology by mjoach on 2009-08-02 11:27:03 as along with 1 person sWorgan
	Reconstructing gene-regulatory networks from time series, knock-out data, and prior knowledge [My Copy] BMC Systems Biology, Vol. 1, No. 1. (2007), 11. by Florian Geier, Jens Timmer, Christian Fleck posted to grn reconstruction systems-biology by mjoach on 2009-08-02 11:21:07 as along with 6 people edwardmorrissey guhjy tuck wnpx Ao_Li2007 ptrobajo
	Reconstruction and Structural Analysis of Metabolic and Regulatory Networks [My Copy] Introduction to Systems Biology (2007), pp. 124-146. by Hong-Wu Ma, Marcio R. Silva, Ji-Bin Sun, Bharani Kumar, An-Ping Zeng posted to grn networks reconstruction systems-biology by mjoach on 2009-08-02 11:11:47 as along with 2 people Borelli hryk
	The Geographic Mosaic of Sex and the Red Queen [My Copy] Current Biology (23 July 2009) by Kayla C. King, Lynda F. Delph, Jukka Jokela, Curtis M. Lively posted to evolution-of-sex parasites red-queen by mjoach on 2009-07-30 19:55:00 as along with 1 person devindrown
	On the Origin of The Nervous System [My Copy] Science, Vol. 325, No. 5936. (3 July 2009), pp. 24-26. by Greg Miller posted to evolution evolution-of-nervous-system nervous origin origins system by mjoach on 2009-07-24 10:13:16 as along with 5 people josepe timotay pawelsobko apocapoc z1song
	On the Origin of Sexual Reproduction [My Copy] Science, Vol. 324, No. 5932. (5 June 2009), pp. 1254-1256. by Carl Zimmer posted to biology origin recombination sex sexual by mjoach on 2009-07-23 08:43:47 as along with 2 people and 1 group dlobo fool_on_hill GEB
	A Yeast Hybrid Provides Insight into the Evolution of Gene Expression Regulation [My Copy] Science, Vol. 324, No. 5927. (1 May 2009), pp. 659-662. by Itay Tirosh, Sharon Reikhav, Avraham A. Levy, Naama Barkai posted to cis-regulation cis-vs-trans grn trans-regulation by mjoach on 2009-07-22 12:25:19 as along with 8 people dbensasson dipenps absterga djkt jbhiatt maximilianh emptyhb TRHvidsten
	SYSTEMS BIOLOGY: Attractors and Democratic Dynamics [My Copy] Science, Vol. 323, No. 5917. (20 February 2009), pp. 1016-1017. by Yaneer Bar-Yam, Dion Harmon, Benjamin de Bivort posted to attractors democratic density dynamics grn by mjoach on 2009-07-22 12:19:59 as along with 6 people davidcsterratt rdiaz agomez kieran101 jjray renatomilani
	Synthetic Gene Networks That Count [My Copy] Science, Vol. 324, No. 5931. (29 May 2009), pp. 1199-1202. by Ari E. Friedland, Timothy K. Lu, Xiao Wang, David Shi, George Church, James J. Collins posted to counters grn synthetic by mjoach on 2009-07-22 11:52:28 as along with 15 people dbikard pyjamashark abhishek_tiwari myzhang reyez austin alexknight twatanab kshundyak phoenixzxl sen_cheng leliavski jbhiatt jjray dswan
	It's the DNA That Counts [My Copy] Science, Vol. 324, No. 5931. (29 May 2009), pp. 1156-1157. by Christina D. Smolke posted to counters grn synthetic by mjoach on 2009-07-22 11:50:03 as along with 3 people abhishek_tiwari alexknight pansapiens
	Transcriptional Regulatory Networks in Saccharomyces cerevisiae [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 799-804. by Tong I. Lee, Nicola J. Rinaldi, Francois Robert, et al.Duncan T. Odom, Ziv Bar-Joseph, Georg K. Gerber, Nancy M. Hannett, Christopher T. Harbison, Craig M. Thompson, Itamar Simon, Julia Zeitlinger, Ezra G. Jennings, Heather L. Murray, D. Benjamin Gordon, Bing Ren, John J. Wyrick, Jean-Bosco Tagne, Thomas L. Volkert, Ernest Fraenkel, David K. Gifford, Richard A. Young posted to biological density factors grn regulators by mjoach on 2009-06-30 15:31:38 as along with 32 people and 2 groups viren4388 kmdaily kinop junehlee lillo80 camster snuppepuppan icases forluvoft ggrot alokm opheliav samal sameetmehta cconboy koller jguinney franklin timflutre jpoyatos lusk nklee karfunkel mimulus_99 roys njcitulike brant kristallreiner Borelli Takayuki dquest siebert dbk-lab TNT
	Evolving Gene Regulatory Networks for Virtual Creatures [My Copy] International Conference on Natural Computation, Vol. 6 (2008), pp. 396-400. by Wengao Huang posted to evolution morphogenesis by mjoach on 2009-06-18 17:49:20 as
	Evolution of Evolvability in Gene Regulatory Networks [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000112. by Anton Crombach, Paulien Hogeweg posted to alife evolvability grn by mjoach on 2009-06-14 16:56:11 as along with 18 people and 1 group tomhebbron roys semrich wangbo kaarsinogen renatomilani aramesh2 erel10 Ema jdiezperezj bootsy dlobo Stew djkt dquest shoshin rebeccamancy Borelli GEB
	Origins of magic: review of genetic and epigenetic effects. [My Copy] BMJ (Clinical research ed.), Vol. 335, No. 7633. (22 December 2007), pp. 1299-1301. by S. V. Ramagopalan, M. Knight, G. C. Ebers, J. C. Knight posted to fun genetics by mjoach on 2009-06-07 13:04:49 as along with 2 people operon kibrain
	Survival of the sparsest: robust gene networks are parsimonious [My Copy] Mol Syst Biol, Vol. 4 (2008) by Robert D. Leclerc posted to alife cost_of_complexity dense grn robustness sparse by mjoach on 2009-05-25 16:44:35 as along with 8 people and 1 group josedavid sg45653 Borelli bootsy Retchless maralena bpcusack reyez GEB
	From DNA to Diversity: Molecular Genetics and the Evolution of Animal Design [My Copy] (15 September 2004) by Sean B. Carroll, Jennifer K. Grenier, Scott D. Weatherbee posted to biology evo-devo evolution networks regulatory by mjoach on 2009-05-15 12:46:11 as along with 1 person and 1 group indigoviolet EisenLab
	Achieving a simple development model for 3D shapes: are chemicals necessary? [My Copy] In GECCO '07: Proceedings of the 9th annual conference on Genetic and evolutionary computation (2007), pp. 1013-1020. by Pauline C. Haddow, Johan Hoye posted to 3d alife artificial embryogeny morphogenesis shape by mjoach on 2009-05-14 11:04:13 as along with 1 person and 1 group dlobo GEB
	Biological Development of Cell Patterns: Characterizing the Space of Cell Chemistry Genetic Regulatory Networks [My Copy] Advances in Artificial Life (2005), pp. 57-66. by Nicholas Flann, Jing Hu, Mayank Bansal, Vinay Patel, Greg Podgorski posted to alife development morphogenesis by mjoach on 2009-05-07 16:37:19 as along with 1 person and 1 group josedavid GEB
	Evolving an Artificial Regulatory Network for 2D Cell Patterning [My Copy] Artificial Life, 2007. ALIFE '07. IEEE Symposium on In Artificial Life, 2007. ALIFE '07. IEEE Symposium on (2007), pp. 47-53. by A. Chavoya, Y. Duthen posted to alife development morphogenesis patterning by mjoach on 2009-05-07 16:34:00 as
	Artificial Embryology And Cellular Differentiation [My Copy] In Evolutionary Design by Computers (1999), pp. 281-295. by Hugo De Garis, Brain B. Group posted to alife cellular-automata development morphogenesis by mjoach on 2009-05-07 16:26:55 as
	Histone arginine methylation regulates pluripotency in the early mouse embryo [My Copy] Nature, Vol. 445, No. 7124., pp. 214-218. by Maria-Elena Torres-Padilla, David-Emlyn Parfitt, Tony Kouzarides, Magdalena Zernicka-Goetz posted to development epigenetics methylation symmetry_breaking by mjoach on 2009-05-07 16:22:19 as along with 1 person uz_labu_laimi
	Evolutionary morphogenesis for multi-cellular systems [My Copy] Genetic Programming and Evolvable Machines, Vol. 8, No. 1. (March 2007), pp. 61-96. by Roggen, Daniel, Federici, Diego, Floreano, Dario posted to alife development evolution morphogenesis by mjoach on 2009-05-07 16:18:25 as along with 2 people and 1 group mcphee dlobo GEB
	Evolving the Ability of Limited Growth and Self-Repair for Artificial Embryos [My Copy] Advances in Artificial Life (2003), pp. 289-298. by Felix Streichert, Christian Spieth, Holger Ulmer, Andreas Zell posted to development embryogenesis by mjoach on 2009-05-07 16:13:13 as
	Shapes in the shadow: evolutionary dynamics of morphogenesis [My Copy] Artif. Life, Vol. 6, No. 1. (1999), pp. 85-101. by P. Hogeweg posted to cells cpm development by mjoach on 2009-05-07 16:01:08 as
	Positional information and pattern formation. [My Copy] Current topics in developmental biology, Vol. 6, No. 6. (1971), pp. 183-224. by L. Wolpert posted to development morphogen positional_information by mjoach on 2009-05-07 15:57:30 as
	The Chemical Basis of Morphogenesis [My Copy] Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences (1934-1990), Vol. 237, No. 641. (1952), pp. 37-72. by A. M. Turing posted to foundation morphogenesis by mjoach on 2009-05-07 15:48:03 as along with 3 people fierykylin angichau softsimu
	A cell-centered approach to developmental biology [My Copy] Physica A: Statistical Mechanics and its Applications In Physics Applied to Biological Systems, Physics Applied to Biological Systems, Vol. 352, No. 1. (1 July 2005), pp. 113-130. by Roeland M. Merks, James A. Glazier posted to development embryogenesis by mjoach on 2009-05-07 15:44:48 as along with 3 people danlea Doug lisa1
	Why Are Evolved Developing Organisms Also Fault-Tolerant? [My Copy] From Animals to Animats 9 In From Animals to Animats 9: Proceedings of the Ninth International Conference on Simulation of Adaptive Behaviour (2006), pp. 449-460. by Diego Federici, Tom Ziemke posted to alife cells development grn by mjoach on 2009-05-07 15:38:03 as along with 1 person and 1 group dlobo GEB
	Using Embryonic Stages to increase the evolvability of development [My Copy] In In Proceedings of the Genetic and Evolutionary Computation Conference (GECCO-2004) (2004) by Diego Federici posted to alife development french_flag grn by mjoach on 2009-05-07 15:32:50 as
	Robust multi-cellular developmental design [My Copy] In GECCO '07: Proceedings of the 9th annual conference on Genetic and evolutionary computation (2007), pp. 982-989. by Alexandre Devert, Nicolas Bredeche, Marc Schoenauer posted to alife cels development french-flag grn by mjoach on 2009-05-07 15:25:26 as
	Cell Tracking: Genesis and Epigenesis in an Artificial Organism [My Copy] Advances in Artificial Life In Advances in Artificial Life, 9th European Conference, ECAL 2007, Lisbon, Portugal, September 10-14, 2007, Proceedings, Vol. 4648 (2007), pp. 163-171. by Alessandro Fontana edited by Fernando, Luis, Ernesto C. And, Inman H. And, António Coutinho posted to alife development epigenetics french-flag patterning by mjoach on 2009-04-30 13:42:37 as

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grn	86
evolution	75
alife	72
development	39
gene-networks	34
gene-regulation	32
embryogenesis	28
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morphogenesis	11
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writing	1

mjoach's library 209 articles Export

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