mjt's library 1091 articles Export

	Algebra of Probable Inference [My Copy] (01 February 2002) by Richard T. Cox posted to no-tag by mjt on 2005-03-15 22:36:41 as along with 3 people brian yaroslavvb abellogin
	A tutorial on learning with Bayesian networks [My Copy] (1999), pp. 301-354. by David Heckerman posted to no-tag by mjt on 2005-03-15 22:35:17 as along with 10 people and 1 group birte yaroslavvb JoSeK abhik garyfeng grimm balicea wnpx rsantana slygent ReadingLab
	Chemogenomic profiling on a genome-wide scale using reverse-engineered gene networks [My Copy] Nature Biotechnology, Vol. 23, No. 3. (04 March 2005), pp. 377-383. by Diego di Bernardo, Michael J. Thompson, Timothy S. Gardner, et al.Sarah E. Chobot, Erin L. Eastwood, Andrew P. Wojtovich, Sean J. Elliott, Scott E. Schaus, James J. Collins posted to compound discovery drug inference mode-of-action network reverse-engineer target yeast by mjt on 2005-03-15 22:18:54 as along with 11 people and 2 groups edwardmorrissey mingzhi VGreiff provero ptrobajo rklancer snuppepuppan kentsis rhem1224 balajis jayster4 TCR_Signaling SysbioMPI-TCells
	Hydration and mobility of HO-(aq). [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 19. (11 May 2004), pp. 7229-7233. by D. Asthagiri, L. R. Pratt, J. D. Kress, M. A. Gomez posted to aimd hydration hydroxide quasichemical by mjt on 2005-03-15 22:14:23 as
	KEGG: Kyoto Encyclopedia of Genes and Genomes [My Copy] Nucleic Acids Res., Vol. 28 (2000), pp. 27-30. by M. Kanehisa, S. Goto posted to bibtex-import by mjt on 2005-03-15 21:56:06 as
	Yeast life-span extension by calorie restriction is independent of NAD fluctuation [My Copy] Science, Vol. 302 (2003), pp. 2124-2126. by R. M. Anderson, M. Latorre Esteves, A. R. Neves, et al.S. Lavu, O. Medvedik, C. Taylor, K. T. Howitz, H. Santos, D. A. Sinclair posted to bibtex-import by mjt on 2005-03-15 21:56:06 as
	DNA arrays for analysis of gene expression [My Copy] Methods Enzymology, Vol. 303 (1999), pp. 179-205. by M. B. Eisen, P. O. Brown posted to bibtex-import by mjt on 2005-03-15 21:56:06 as
	Thioredoxin 2: cleavage with cyanogen bromide [My Copy] Eur. J. Biochem., Vol. 2 (1967), pp. 187-196. by A. Holmgren, P. Reichard posted to bibtex-import by mjt on 2005-03-15 21:56:06 as
	Integration of chemical-genetic and genetic interaction data links bioactive compounds to cellular target pathways [My Copy] Nature Biotechnology, Vol. 22 (2004), pp. 62-69. by A. B. Parsons, R. L. Brost, H. Ding, et al.Z. Li, C. Zhang, B. Sheikh, G. W. Brown, P. M. Kane, T. R. Hughes, C. Boone posted to bibtex-import by mjt on 2005-03-15 21:56:06 as
	Genomic profiling of drug sensitivities via induced haploinsufficiency [My Copy] Nature Genetics, Vol. 21 (1999), pp. 278-283. by G. Giaever, D. D. Shoemaker, T. W. Jones, et al.H. Liang, E. A. Winzeler, A. Astromoff, R. W. Davis posted to bibtex-import by mjt on 2005-03-15 21:56:06 as
	Maximum likelihood from incomplete data via the EM algorithm [My Copy] Journal of the Royal Statistical Society, Series B, Vol. 39 (1977), pp. 1-38. by A. Dempster, N. Laird, D. Rubin posted to bibtex-import by mjt on 2005-03-15 21:56:06 as
	FK228 (depsipeptide) as a natural prodrug that inhibits class I histone deacetylases [My Copy] Cancer Research, Vol. 62 (2002), pp. 4916-4921. by R. Furumai, A. Matsuyama, N. Kobashi, et al.K. H. Lee, M. Nishiyama, H. Nakajima, Akito Tanaka, Y. Komatsu, N. Nishino, M. Yoshida, S. Horinouchi posted to bibtex-import by mjt on 2005-03-15 21:56:06 as
	Survival of DNA damage in yeast directly depends on increased dNTP levels allowed by relaxes feedback inhibition of ribonucleotide reductase [My Copy] Cell, Vol. 112 (2003), pp. 391-401. by A. Chabes, B. Georgieva, V. Domkin, X. Zhao, R. Rothstein, L. Thelander posted to bibtex-import by mjt on 2005-03-15 21:56:06 as
	Exploration of essential gene functions via titratable promoter alleles [My Copy] Cell, Vol. 118 (2004), pp. 31-44. by Sanie Mnaimneh, Armaity P. Davierwala, Jennifer Haynes, et al.Jason Moffat, Wen T. Peng, Wen Zhang, Xueqi Yang, Jeff Pootoolal, Gardon Chua, Andres Lopez, Miles Trochesset, Darcy Morse, Nevan J. Krogan, Shawna L. Hiley, Zhijian Li, Quaid Morris, Jorg Grigull, Nicholas Mitsakakis, Christopher J. Roberts, Jack F. Greenblatt, Charles Boone, Chris A. Kaiser, Brenda J. Andrews, Timothy R. Hughes posted to bibtex-import by mjt on 2005-03-15 21:56:06 as
	Genes required for ionizing radiation resistance in yeast [My Copy] Nature Genetics, Vol. 29 (2001), pp. 426-434. by C. Bennett, L. Lewis, G. Karthikeyan, et al.K. Lobachev, Y. Jin, J. Sterling, J. Snipe, M. Resnick posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Saccharomyces cerevisiae Dap1p, a novel DNA damage response protein related to the mammalian membrane-associated progesterone receptor [My Copy] Eukaryotic Cell, Vol. 2 (2003), pp. 306-317. by Randal A. Hand, Nan Jia, Martin Bard, Rolf J. Craven posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Genomic Cis-Regulatory Logic: Experimental and Computational Analysis of a Sea Urchin Gene [My Copy] Science, Vol. 279 (1998), pp. 1896-1902. by Chiou H. Yuh, Hamid Bolouri, Eric H. Davidson posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Reverse engineering gene networks using singular value decomposition and robust regression [My Copy] Proc. Natl. Acad. Sci. USA, Vol. 99 (2002), pp. 6163-6168. by M. K. S. Yeung, J. Tegner, J. J. Collins posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	in Escherichia coli and Salmonella: Cellular and Molecular Biology [My Copy] (1996), pp. 1400-1416. by Graham C. Walker edited by Frederick C. Neidhardt, Roy Curtiss, Edmund C. Lin posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	How to reconstruct a large genetic network from $n$ gene perurbations in fewer that $n^2$ easy steps [My Copy] Bioinformatics, Vol. 17 (2001), pp. 1183-1197. by A. Wagner posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Transcriptional repsonses to DNA damage [My Copy] Curr. Opin. Microbiol., Vol. 4 (2001), pp. 178-185. by Michael R. Volkert, Paolo Landini posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	A combined experimental and computatinoal strategy to define protein interaction networks for peptide recognition modules [My Copy] Science, Vol. 295 (2002), pp. 321-324. by A. H. Y. Amy, Becky Drees, Giuliano Nardelli, et al.Gary D. Bader, Barbara Brannetti, Luisa Castagnoli, Mari Evangelista, Silvia Ferracuti, Bryce Nelson, Serena Paoluzi, Michele Quondam, Adriana Zucconi, Christopher W. V. Hogue, Stanley Fields, Charles Boone, Gianni Cesareni posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Systematic determination of genetic network architecture [My Copy] Nature. Genet., Vol. 22 (1999), pp. 281-285. by S. Tavazoie, J. D. Hughes, M. J. Campbell, R. J. Cho, G. M. Church posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Probabilistic Boolean networks: a rule based uncertainty model for gene regulatory networks [My Copy] Bioinformatics, Vol. 18 (2002), pp. 261-274. by I. Shmulevich, E. R. Dougherty, S. Kim, W. Zhang posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Network motifs in the transcriptional regulation network of Eshericia coli [My Copy] Nat. Genet., Vol. 31 (2002), pp. 64-68. by S. S. S. Shai, Ron Milo, Shmoolik Mangan, Uri Alon posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	A network of protein-protein interactions in yeast [My Copy] Nat. Biotechnol., Vol. 18 (2000), pp. 1257-1261. by Benno Schwikowski, Peter Uetz, Stanley Fields posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Computatoinal modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors [My Copy] Nat. Biotechnol., Vol. 20 (2002), pp. 370-375. by Birgit Schoeberl, Claudia E. Jonsson, Ernst D. Dilles, Gertraud Müller posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Building and analysing genome-wide gene disruption networks [My Copy] Bioinformatics, Vol. 18 (2002), pp. S202-S210. by J. Rung, T. Schlitt, A. Brazma, K. Freivalds, J. Vilo posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Hierarchical organization of modularity in metabolic networks [My Copy] Science, Vol. 297 (2002), pp. 1551-1555. by E. Ravasz, A. L. Somera, D. A. Mongru, Z. N. Oltvai, A. L. Barabási posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Identifying rgulatory networks by combinatorial analysis of promoter elements [My Copy] Nature Genet., Vol. 29 (2001), pp. 153-159. by Yitzhak Pilpel, Priya Sudarsanam, George M. Church posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Untitled [My Copy] posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Life's Complexity Pyramid [My Copy] Science, Vol. 298 (2002), pp. 763-764. by Z. N. Oltvai, A. L. Barabási posted to bibtex-import by mjt on 2005-03-15 21:56:05 as along with 1 person ChaTo
	Network motifs: simple building blocks of complex networks [My Copy] Science, Vol. 298 (2002), pp. 824-827. by R. Milo, Shen S. Orr, S. Itzkovitz, N. Kashtan, D. Chklovskii, U. Alon posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Untitled [My Copy] posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Simulation of prokaryotic genetic circuits [My Copy] Annu. Rev. Biophys. Biomol. Struct., Vol. 27 (1998), pp. 199-224. by Harley H. Mcadams, Adam Arkin posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Circuit simulation of genetic networks [My Copy] Science, Vol. 269 (1995), pp. 650-656. by Harley H. Mcadams, Lucy Shapiro posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Specificity and stability in topology of protein networks [My Copy] Science, Vol. 296 (2002), pp. 910-913. by Sergei Maslov, Kim Sneppen posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	REVEAL, a General Reverse Engienering Algorithm for Inference of Genetic Network Architectures [My Copy] Proc. Pacific Symp. Biocomp., Vol. 3 (1998), pp. 18-29. by S. Liang, S. Fuhrman, R. Somogyi posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Riddle of Biofilm Resistance [My Copy] Antimicrob. Agents Chemother., Vol. 45 (2001), pp. 999-1007. by K. Lewis posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Programmed death in bacteria [My Copy] Microbiol. Mol. Biol. Rev., Vol. 64 (2000), pp. 503-514. by K. Lewis posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Transcriptional Regulatory Networks in Saccharomyces cerevisae [My Copy] Science, Vol. 298 (2002), pp. 799-804. by Tong I. Lee, Nicola J. Rinaldi, Fran\ccois Robert, et al.Duncan T. Odom, Ziv B. Joseph, Georg K. Gerber, Nancy M. Hannett, Christopher T. Harbison, Craig M. Thompson, Itamar Simon, Julia Zeitlinger, Ezra G. Jennings, Heather L. Murray, D. Benjamin Gordon, Bing Ren, John J. Wyrick, Jean B. Tagne, Thomas L. Volkert, Ernest Fraenkel, David K. Gifford, Richard A. Young posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	in DNA Damage and Repair, Vol. 1: DNA Repair in Prokaryotes and Lower Eukaryotes [My Copy] Vol. 1 (1998), pp. 107-134. by Walter H. Koch, Roger Woodgate edited by J. A. Nickoloff, M. F. Hoekstra posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	The Ecocyc database [My Copy] Nucleic Acids Res., Vol. 30 (2002) by P. D. Karp, M. Riley, M. Saier, I. T. Paulsen, S. Paley, A. Pellegrini Toole posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Lethality and centrality in protein networks [My Copy] Nature, Vol. 411 (2001), pp. 41-42. by H. Jeong, S. P. Mason, A. L. Barabási, Z. N. Oltvai posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Revealing modular organization in the yeast transcriptional network [My Copy] Nature Genet, Vol. 31 (2002), pp. 370-377. by James Ihmels, Gilgi Friedlander, Sven Bergmann, Ofer Sarig, Yaniv Ziv, Naama Barkai posted to bibtex-import by mjt on 2005-03-15 21:56:05 as along with 1 person tvdbulck
	Integrated genomic and proteomic analyses of a systematically perturbed metabolic network [My Copy] Science, Vol. 292 (2001), pp. 929-934. by Trey Ideker, Vesteinn Thorsson, Jeffrey A. Ranish, et al.Rowan Christmas, Jeremy Buhler, Jimmy K. Eng, Roger Bumgarner, David R. Goodlett, Ruedi Aebersold, Leroy Hood posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Functional discovery via a compendium of expression profiles [My Copy] Cell, Vol. 102 (2000), pp. 109-126. by Timothy R. Hughes, Matthew J. Marton, Allan R. Jones, et al.Christopher J. Roberts, Roland Stoughton, Chirstopher D. Armour, Others posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Survival of hunger and stress: the role of rpoS in early stationary phase gene regulation in E. coli [My Copy] Cell, Vol. 72 (1993), pp. 165-168. by Regine H. Aronis posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Combining location and expression data for principled discovery of genetic regulatory network [My Copy] Proc. Pacific. Symp. Biocomp., Vol. 7 (2002), pp. 437-449. by A. J. Hartemink, D. K. Gifford, T. S. Jaakkola, R. A. Young posted to bibtex-import by mjt on 2005-03-15 21:56:05 as
	Untitled [My Copy] posted to bibtex-import by mjt on 2005-03-15 21:56:05 as

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